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2024

Gomes Marina Vitoria, Landwerlin Pauline, Diebold-Durand Marie-Laure, Shaik Tajith B, Durand Alexandre, Troesch Edouard, Weber Chantal, Brillet Karl, Lemée Marianne Victoria, Decroos Christophe, Dulac Ludivine, Antony Pierre, Watrin Erwan, Ennifar Eric, Golzio Christelle, Romier Christophe

The cohesin ATPase cycle is mediated by specific conformational dynamics and interface plasticity of SMC1A and SMC3 ATPase domains Article de journal

Dans: Cell Rep, vol. 43, no. 9, p. 114656, 2024, ISSN: 2211-1247.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN

Bussi Giovanni, Bonomi Massimiliano, Gkeka Paraskevi, Sattler Michael, Al-Hashimi Hashim M, Auffinger Pascal, Duca Maria, Foricher Yann, Incarnato Danny, Jones Alisha N, Kirmizialtin Serdal, Krepl Miroslav, Orozco Modesto, Palermo Giulia, Pasquali Samuela, Salmon Loïc, Schwalbe Harald, Westhof Eric, Zacharias Martin

RNA dynamics from experimental and computational approaches Article de journal

Dans: Structure, vol. 32, no. 9, p. 1281–1287, 2024, ISSN: 1878-4186.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN, WESTHOF

Imbernon Julia Revillo, Weibel Jean‐Marc, Ennifar Eric, Prévost Gilles, Kellenberger Esther

Structural analysis of neomycin B and kanamycin A binding Aminoglycosides Modifying Enzymes (AME) and bacterial ribosomal RNA Article de journal

Dans: Molecular Informatics, 2024, ISSN: 1868-1751.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN

D'Agostino Mattia, Simonetti Angelita, Motta Stefano, Wolff Philippe, Romagnoli Alice, Piccinini Astra, Spinozzi Francesco, Marino Daniele Di, Teana Anna La, Ennifar Eric

Crystal structure of archaeal IF5A-DHS complex reveals insights into the hypusination mechanism Article de journal

Dans: Structure, 2024, ISSN: 1878-4186.

Résumé | Liens | BibTeX | Étiquettes: ARN-MS, ENNIFAR, Unité ARN

Brillet Karl, Janczuk-Richter Marta, Poon Amanda, Laukart-Bradley Joanne, Ennifar Eric, Lebars Isabelle

Characterization of SLA RNA promoter from dengue virus and its interaction with the viral non-structural NS5 protein Article de journal

Dans: Biochimie, vol. 222, p. 87–100, 2024, ISSN: 1638-6183.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN

Compain Guillaume, Monsarrat Clément, Blagojevic Julie, Brillet Karl, Dumas Philippe, Hammann Philippe, Kuhn Lauriane, Martiel Isabelle, Engilberge Sylvain, Oliéric Vincent, Wolff Philippe, Burnouf Dominique Y, Wagner Jérôme, Guichard Gilles

Peptide-Based Covalent Inhibitors Bearing Mild Electrophiles to Target a Conserved His Residue of the Bacterial Sliding Clamp Article de journal

Dans: JACS Au, vol. 4, no. 2, p. 432–440, 2024, ISSN: 2691-3704.

Résumé | Liens | BibTeX | Étiquettes: ARN-MS, ENNIFAR, PPSE, Unité ARN

2023

Giuliodori Anna Maria, Belardinelli Riccardo, Duval Melodie, Garofalo Raffaella, Schenckbecher Emma, Hauryliuk Vasili, Ennifar Eric, Marzi Stefano

CspA stimulates translation in the cold of its own mRNA by promoting ribosome progression Article de journal

Dans: Front Microbiol, vol. 14, p. 1118329, 2023, ISSN: 1664-302X.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, ROMBY, Unité ARN

2022

Mráziková Klaudia, Kruse Holger, Mlýnský Vojtěch, Auffinger Pascal, Šponer Jiří

Multiscale Modeling of Phosphate···π Contacts in RNA U-Turns Exposes Differences between Quantum-Chemical and AMBER Force Field Descriptions Article de journal

Dans: J Chem Inf Model, vol. 62, iss. 23, p. 6182-6200, 2022, ISSN: 1549-960X.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN

Mair Stefan, Erharter Kevin, Renard Eva, Brillet Karl, Brunner Melanie, Lusser Alexandra, Kreutz Christoph, Ennifar Eric, Micura Ronald

Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA Article de journal

Dans: Nucleic Acids Res, vol. 50, iss. 11, p. 6038-6051, 2022, ISSN: 1362-4962.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN

Roovers Martine L, Labar Geoffray, Wolff Philippe, Feller Andre, Elder Dany Van, Soin Romuald, Gueydan Cyril, Kruys Veronique, Droogmans Louis

The Bacillus subtilis open reading frame ysgA encodes the SPOUT methyltransferase RlmP forming 2'-O-methylguanosine at position 2553 in the A-loop of 23S rRNA Article de journal

Dans: RNA, vol. 28, iss. 9, p. 1185-1196, 2022, ISSN: 1469-9001.

Résumé | Liens | BibTeX | Étiquettes: ARN-MS, ENNIFAR, Unité ARN

Bereiter R., Renard E., Breuker K., Kreutz C., Ennifar E., Micura R.

1-Deazaguanosine-Modified RNA: The Missing Piece for Functional RNA Atomic Mutagenesis Article de journal

Dans: J Am Chem Soc, vol. 144, iss. 23, p. 10344-10352, 2022, ISBN: 35666572, (1520-5126 (Electronic) 0002-7863 (Linking) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN

2021

Bec G, Ennifar E

switchSENSE Technology for Analysis of DNA Polymerase Kinetics Chapitre d'ouvrage

Dans: Rederstorff, M (Ed.): vol. 2247, p. 145-153, Springer Protocols, Humana Press, New York, NY, Small Non-Coding RNAs, 2021.

Résumé | BibTeX | Étiquettes: Biosensor, DNA polymerase, ENNIFAR, HIV reverse transcriptase, Kinetics, switchSENSE technology, Unité ARN

Chagot M E, Quinternet M, Manival X, Lebars I

Application of NMR Spectroscopy to Determine the 3D Structure of Small Non-Coding RNAs Article de journal

Dans: Methods Mol Biol, vol. 2300, p. 251-266, 2021, ISBN: 33792884, (1940-6029 (Electronic) 1064-3745 (Linking) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 3D structure, dynamics, ENNIFAR, NMR, RNA, Unité ARN

Velours C, Aumont-Nicaise M, Uebel S, England P, Velazquez-Campoy A, Stroebel D, Bec G, Soule P, Quetard C, Ebel C, Roussel A, Charbonnier J B, Varela P F

Macromolecular interactions in vitro, comparing classical and novel approaches Article de journal

Dans: Eur Biophys J, vol. 50, no. 3-4, p. 313-330, 2021, ISBN: 33792745, (1432-1017 (Electronic) 0175-7571 (Linking) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Artificial binders, Double-stranded DNA breaks repair factors, ENNIFAR, Macromolecular interactions, Molecular scale biophysics, Unité ARN

Bereiter R, Himmelstoss M, Renard E, Mairhofer E, Egger M, Breuker K, Kreutz C, Ennifar E, Micura R

Impact of 3-deazapurine nucleobases on RNA properties Article de journal

Dans: Nucleic Acids Res, vol. 49, no. 8, p. 4281-4293, 2021, ISBN: 33856457, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN

Schenckbecher E, Bec G, Sakamoto T, Meyer B, Ennifar E

Biophysical Studies of the Binding of Viral RNA with the 80S Ribosome Using switchSENSE Article de journal

Dans: Methods Mol Biol, vol. 2263, p. 341-350, 2021, ISBN: 33877606, (1940-6029 (Electronic) 1064-3745 (Linking) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Biophysics, ENNIFAR, Kinetics, Ribosome, RNA, switchSENSE, Unité ARN

Velazquez-Campoy A, Claro B, Abian O, Horing J, Bourlon L, Claveria-Gimeno R, Ennifar E, England P, Chaires J B, Wu D, Piszczek G, Brautigam C, Tso S C, Zhao H, Schuck P, Keller S, Bastos M

A multi-laboratory benchmark study of isothermal titration calorimetry (ITC) using Ca(2+) and Mg(2+) binding to EDTA Article de journal

Dans: Eur Biophys J, vol. 50, no. 3-4, p. 429-451, 2021, ISBN: 33864101, (1432-1017 (Electronic) 0175-7571 (Linking) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Benchmark study, Data treatment, ENNIFAR, Isothermal Titration Calorimetry (ITC), Ligand-binding, Sample preparation, Standard reaction, Unité ARN

Ramos-Morales E, Bayam E, Del-Pozo-Rodriguez J, Salinas-Giege T, Marek M, Tilly P, Wolff P, Troesch E, Ennifar E, Drouard L, Godin J D, Romier C

The structure of the mouse ADAT2/ADAT3 complex reveals the molecular basis for mammalian tRNA wobble adenosine-to-inosine deamination Article de journal

Dans: Nucleic Acids Res, vol. 49, no. 11, p. 6529-6548, 2021, ISBN: 34057470, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: ARN-MS, ENNIFAR, Unité ARN

Himmelstoss M, Erharter K, Renard E, Ennifar E, Kreutz C, Micura R

2'-O-Trifluoromethylated RNA - a powerful modification for RNA chemistry and NMR spectroscopy Article de journal

Dans: Chem Sci, vol. 11, no. 41, p. 11322-11330, 2021, ISBN: 34094374, (2041-6520 (Print) 2041-6520 (Linking) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN

Thepaut M, Campos-Silva R, Renard E, Barloy-Hubler F, Ennifar E, Boujard D, Gillet R

Safe and easy in vitro evaluation of tmRNA-SmpB-mediated trans-translation from ESKAPE pathogenic bacteria Article de journal

Dans: Rna, 2021, ISBN: 34353925, (1469-9001 (Electronic) 1355-8382 (Linking) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN

Andre C, Veillard F, Wolff P, Lobstein A M, Compain G, Monsarrat C, Reichhart J M, Burnouf D Y, Guichard G, Wagner J E

Antibacterial activity of a dual peptide targeting the Escherichia coli sliding clamp and the ribosome Article de journal

Dans: RSC Chem Biol, vol. 2, no. 4, p. 1296, 2021, ISBN: 34459830, (2633-0679 (Electronic) 2633-0679 (Linking) Published Erratum).

Résumé | Liens | BibTeX | Étiquettes: ARN-MS, ENNIFAR, reichhart, Unité ARN

Mrazikova K., Sponer J., Mlynsky V., Auffinger P., Kruse H.

Short-Range Imbalances in the AMBER Lennard-Jones Potential for (Deoxy)Ribose.Nucleobase Lone-Pair.pi Contacts in Nucleic Acids Article de journal

Dans: J Chem Inf Model, vol. 61, no. 11, p. 5644-5657, 2021, ISBN: 34738826, (1549-960X (Electronic) 1549-9596 (Linking) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN

Monsarrat C., Compain G., Andre C., Engilberge S., Martiel I., Olieric V., Wolff P., Brillet K., Landolfo M., da Veiga C. Silva, Wagner J., Guichard G., Burnouf D. Y.

Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp Article de journal

Dans: J Med Chem, 2021, ISBN: 34806883, (1520-4804 (Electronic) 0022-2623 (Linking) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: ARN-MS, ENNIFAR, Unité ARN

2020

Abaeva I S, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova T V, Hashem Y, Hellen C U T

The Halastavi árva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism Article de journal

Dans: Cell Reports, vol. 33, no. 10, p. 108476, 2020.

Résumé | Liens | BibTeX | Étiquettes: Cricket paralysis virus, Dicistrovirus, ENNIFAR, Halastavi árva virus; IRES, intergenic region, internal ribosomal entry site, pseudoknot, Ribosome, SERBP1, SERPINE1 mRNA binding protein 1, Unité ARN

Auffinger P, Ennifar E, D'Ascenzo L

Deflating the RNA Mg 2+ bubble. Stereochemistry to the rescue! Article de journal

Dans: RNA, vol. 27, no. 3, p. 243-252, 2020.

Résumé | Liens | BibTeX | Étiquettes: cryo-EM, ENNIFAR, ionic atmosphere, solvent, Unité ARN, validation, X-Ray

Abel S, Marchi M, Solier J, Finet S, Brillet K, Bonneté F

Structural insights into the membrane receptor ShuA in DDM micelles and in a model of gram-negative bacteria outer membrane as seen by SAXS and MD simulations Article de journal

Dans: Biochim Biophys Acta Biomembr, vol. in press, 2020.

Résumé | Liens | BibTeX | Étiquettes: DDM, ENNIFAR, Membrane transporter ShuA, Molecular dynamics simulations, Outer membrane model, SEC-MALLS, SEC-SAXS, Unité ARN

Wolff P, Villette C, Zumsteg J, Heintz D, Antoine L, Chane-Woon-Ming B, Droogmans L, Grosjean H, Westhof E

Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea Article de journal

Dans: RNA, vol. 26, no. 12, p. 1957-1975, 2020.

Résumé | Liens | BibTeX | Étiquettes: (hyper)thermophiles Archaea mass spectrometry modifications tRNA, ARN-MS, ENNIFAR, Unité ARN, WESTHOF

Simonetti A, Guca E, Bochler A, Kuhn L, Hashem Y

Structural Insights Into the Mammalian Late-Stage Initiation Complexes Article de journal

Dans: Cell Rep, vol. 31, no. 1, p. 107497, 2020, ISBN: 32268096.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, PPSE, Unité ARN

Werner S, Schmidt L, Marchand V, Kemmer T, Falschlunger C, Sednev M V, Bec G, Ennifar E, Höbartner C, Micura R, Motorin Y, Hildebrandt A, Helm M

Machine Learning of Reverse Transcription Signatures of Variegated Polymerases Allows Mapping and Discrimination of Methylated Purines in Limited Transcriptomes Article de journal

Dans: Nucleic Acids Res, vol. 48, no. 7, p. 3734-3746, 2020, ISBN: 32095818.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN

Vigouroux A, Aumont-Nicaise M, Boussac A, Marty L, Bello L Lo, Legrand P, Brillet K, Schalk I J, Moréra S

A unique ferrous iron binding mode is associated to large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa Article de journal

Dans: FEBS J, vol. 287, no. 2, p. 295-309, 2020, ISBN: 31318478.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Pseudomonas aeruginosa iron pyoverdine siderophore solute-binding protein, Unité ARN

Gasser C, Delazer I, Neuner E, Pascher K, Brillet K, Klotz S, Trixl L, Himmelstoß M, Ennifar E, Rieder D, Lusser A, Micura R

Thioguanosine Conversion Enables mRNA-Lifetime Evaluation by RNA Sequencing Using Double Metabolic Labeling (TUC-seq DUAL) Article de journal

Dans: Angew Chem Int Ed Engl, vol. 59, no. 17, p. 6881-6886, 2020, ISBN: 31999864.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, RNA sequencing RNA structures gene expression nucleoside modifications oligonucleotides, Unité ARN

Brillet K, Martinez-Zapien D, Bec G, Ennifar E, Dock-Bregeon A C, Lebars I

Different views of the dynamic landscape covered by the 5'-hairpin of the 7SK small nuclear RNA Article de journal

Dans: RNA, vol. 26, no. 9, p. 1184-1197, 2020, ISBN: 32430362.

Résumé | Liens | BibTeX | Étiquettes: 7SK HEXIM RNA Tat structure, ENNIFAR, Unité ARN

Wolff P, Ennifar E

Native Electrospray Ionization Mass Spectrometry of RNA-Ligand Complexes Chapitre d'ouvrage

Dans: Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, vol. 2113, p. 111-118, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006311.

Résumé | Liens | BibTeX | Étiquettes: ARN-MS, ENNIFAR, Native mass spectrometry RNA, Unité ARN