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2024

Zhang Jian-Hui, Eriani Gilbert, Zhou Xiao-Long

Pathophysiology of human mitochondrial tRNA metabolism Article de journal

Dans: Trends Endocrinol Metab, 2024, ISSN: 1879-3061.

Résumé | Liens | BibTeX | Étiquettes: ERIANI, Unité ARN

Lechner Antony, Wolff Philippe

In-Gel Cyanoethylation for Pseudouridines Mass Spectrometry Detection of Bacterial Regulatory RNA Article de journal

Dans: Methods Mol Biol, vol. 2741, p. 273–287, 2024, ISSN: 1940-6029.

Résumé | Liens | BibTeX | Étiquettes: ARN-MS, Unité ARN

Kohl Maximilian P, Chane-Woon-Ming Béatrice, Bahena-Ceron Roberto, Jaramillo-Ponce Jose, Antoine Laura, Herrgott Lucas, Romby Pascale, Marzi Stefano

Ribosome Profiling Methods Adapted to the Study of RNA-Dependent Translation Regulation in Staphylococcus aureus Article de journal

Dans: Methods Mol Biol, vol. 2741, p. 73–100, 2024, ISSN: 1940-6029.

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Baldaccini Morgane, Gaucherand Léa, Chane-Woon-Ming Béatrice, Messmer Mélanie, Gucciardi Floriane, Pfeffer Sébastien

The helicase domain of human Dicer prevents RNAi-independent activation of antiviral and inflammatory pathways Article de journal

Dans: EMBO J, 2024, ISSN: 1460-2075.

Résumé | Liens | BibTeX | Étiquettes: PFEFFER, Unité ARN

Nerantzaki Maria, Husser Claire, Ryckelynck Michael, Lutz Jean-François

Exchanging and Releasing Information in Synthetic Digital Polymers Using a Strand-Displacement Strategy Article de journal

Dans: J Am Chem Soc, 2024, ISSN: 1520-5126.

Résumé | Liens | BibTeX | Étiquettes: RYCKELYNCK, Unité ARN

2023

Skerniskyte Jurate, Mulet Céline, André Antonin C, Anderson Mark C, Injarabian Louise, Buck Achim, Prade Verena M, Sansonetti Philippe J, Reibel-Foisset Sophie, Walch Axel K, Lebel Michel, Lykkesfeldt Jens, Marteyn Benoit S

Ascorbate deficiency increases progression of shigellosis in guinea pigs and mice infection models Article de journal

Dans: Gut Microbes, vol. 15, no. 2, p. 2271597, 2023, ISSN: 1949-0984.

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Kompatscher Maria, Bartosik Karolina, Erharter Kevin, Plangger Raphael, Juen Fabian Sebastian, Kreutz Christoph, Micura Ronald, Westhof Eric, Erlacher Matthias D

Contribution of tRNA sequence and modifications to the decoding preferences of E. coli and M. mycoides tRNAGlyUCC for synonymous glycine codons Article de journal

Dans: Nucleic Acids Res, 2023, ISSN: 1362-4962.

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Bahena-Ceron Roberto, Teixeira Chloe, Ponce Jose R Jaramillo, Wolff Philippe, Couzon Florence, François Pauline, Klaholz Bruno, Vandenesch François, Romby Pascale, Moreau Karen, Marzi Stefano

RlmQ: A Newly Discovered rRNA Modification Enzyme Bridging RNA Modification and Virulence Traits in Article de journal

Dans: RNA, 2023, ISSN: 1469-9001.

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Ponce José R Jaramillo, Frugier Magali

Plasmodium, the Apicomplexa Outlier When It Comes to Protein Synthesis Article de journal

Dans: Biomolecules, vol. 14, no. 1, p. 46, 2023, ISSN: 2218-273X.

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Lu Kunpeng, Pan Yifei, Shen Jianghong, Yang Lin, Zhan Chengyu, Liang Shubo, Tai Shuaishuai, Wan Linrong, Li Tian, Cheng Tingcai, Ma Bi, Pan Guoqing, He Ningjia, Lu Cheng, Westhof Eric, Xiang Zhonghuai, Han Min-Jin, Tong Xiaoling, Dai Fangyin

SilkMeta: a comprehensive platform for sharing and exploiting pan-genomic and multi-omic silkworm data Article de journal

Dans: Nucleic Acids Res, vol. 52, iss. D1, p. D1024-D1032, 2023, ISSN: 1362-4962.

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Arrivé Mathilde, Bruggeman Mathieu, Skaltsogiannis Vasileios, Coudray Léna, Quan Yi-Fat, Schelcher Cédric, Cognat Valérie, Hammann Philippe, Chicher Johana, Wolff Philippe, Gobert Anthony, Giegé Philippe

A tRNA-modifying enzyme facilitates RNase P activity in Arabidopsis nuclei Article de journal

Dans: Nat Plants, vol. 9, iss. 12, p. 2031-2041, 2023, ISSN: 2055-0278.

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Silva P Malaka De, Bennett Rebecca J, Kuhn Lauriane, Ngondo Patryk, Debande Lorine, Njamkepo Elisabeth, Ho Brian, Weill François-Xavier, Marteyn Benoît S, Jenkins Claire, Baker Kate S

Escherichia coli killing by epidemiologically successful sublineages of Shigella sonnei is mediated by colicins Article de journal

Dans: EBioMedicine, vol. 97, p. 104822, 2023, ISSN: 2352-3964.

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Das Rhiju, Kretsch Rachael C, Simpkin Adam J, Mulvaney Thomas, Pham Phillip, Rangan Ramya, Bu Fan, Keegan Ronan M, Topf Maya, Rigden Daniel J, Miao Zhichao, Westhof Eric

Assessment of three-dimensional RNA structure prediction in CASP15 Article de journal

Dans: Proteins, vol. 91, iss. 12, p. 1747-1770, 2023, ISSN: 1097-0134.

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LABARONNE E., DECIMO D., BERTRAND L., GUIGUETTAZ L., SOHIER T. J. M., CLUET D., VIVET-BOUDOU V., DAHOUI C., FRANçOIS P., HATIN I., LAMBOTTE O., SAMRI A., AUTRAN B., ETIENNE L., GOUJON C., PAILLART J. -C., NAMY O., RAMIREZ B. C., OHLMANN T., MORRIS A., RICCI E. P.

Extensive uORF translation from HIV-1 transcripts elicits specific T cell immune responses in infected individuals and conditions DDX3 dependency for expression of main ORFs Article de journal

Dans: (bioRxiv & medRxiv), 2023.

Liens | BibTeX | Étiquettes: PAILLART, Unité ARN

Zheng Wen-Qiang, Zhang Jian-Hui, Li Zi-Han, Liu Xiuxiu, Zhang Yong, Huang Shuo, Li Jinsong, Zhou Bin, Eriani Gilbert, Wang En-Duo, Zhou Xiao-Long

Mammalian mitochondrial translation infidelity leads to oxidative stress-induced cell cycle arrest and cardiomyopathy Article de journal

Dans: Proc Natl Acad Sci U S A, vol. 120, no. 37, p. e2309714120, 2023, ISSN: 1091-6490.

Résumé | Liens | BibTeX | Étiquettes: ERIANI, Unité ARN

Dufossez Robin, Krafft Marie-Pierre, Ursuegui Sylvain, Mosser Michel, Mouftakhir Safae, Pernod Ketty, Chaubet Guilhem, Ryckelynck Michael, Wagner Alain

Microfluidic Droplet Stabilization via SPAAC Promoted Antibody Conjugation at the Water/Oil Interface Article de journal

Dans: ACS Appl Mater Interfaces, vol. 15, iss. 38, p. 45498-45505, 2023, ISSN: 1944-8252.

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Tidu Antonin, Martin Franck

The interplay between cis- and trans-acting factors drives selective mRNA translation initiation in eukaryotes Article de journal

Dans: Biochimie, vol. 217, p. 20-30, 2023, ISSN: 1638-6183.

Résumé | Liens | BibTeX | Étiquettes: MARTIN, Unité ARN

Wright Duncan E, Krol Alain

FEBS fellowships: supporting excellent science for over four decades Divers

2023, ISSN: 2211-5463.

Résumé | Liens | BibTeX | Étiquettes: KROL, Unité ARN

Pitolli Martina, Cela Marta, Paulus Caroline, Rudinger-Thirion Joëlle, Frugier Magali

RNA aptamers developed against tRip: A preliminary approach targeting tRNA entry in Plasmodium Article de journal

Dans: Biochimie, vol. 217, p. 106-115, 2023, ISSN: 1638-6183.

Résumé | Liens | BibTeX | Étiquettes: FRUGIER, Unité ARN

Tardivat Yann, Sosnowski Piotr, Tidu Antonin, Westhof Eric, Eriani Gilbert, Martin Franck

SARS-CoV-2 NSP1 induces mRNA cleavages on the ribosome Article de journal

Dans: Nucleic Acids Res, vol. 51, iss. 16, p. 8677-8690, 2023, ISSN: 1362-4962.

Résumé | Liens | BibTeX | Étiquettes: ERIANI, MARTIN, Unité ARN

Gaucherand Lea, Iyer Amrita, Gilabert Isabel, Rycroft Chris H, Gaglia Marta M

Cut site preference allows influenza A virus PA-X to discriminate between host and viral mRNAs Article de journal

Dans: Nat Microbiol, 2023, ISSN: 2058-5276.

Résumé | Liens | BibTeX | Étiquettes: PFEFFER, Unité ARN

Pivard Mariane, Caldelari Isabelle, Brun Virginie, Croisier Delphine, Jaquinod Michel, Anzala Nelson, Gilquin Benoît, Teixeira Chloé, Benito Yvonne, Couzon Florence, Romby Pascale, Moreau Karen, Vandenesch François

Complex Regulation of Gamma-Hemolysin Expression Impacts Staphylococcus aureus Virulence Article de journal

Dans: Microbiol Spectr, p. e0107323, 2023, ISSN: 2165-0497.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Jakob Celia, Lovate Gabriel L, Desirò Daniel, Gießler Lara, Smyth Redmond P, Marquet Roland, Lamkiewicz Kevin, Marz Manja, Schwemmle Martin, Bolte Hardin

Sequential disruption of SPLASH-identified vRNA-vRNA interactions challenges their role in influenza A virus genome packaging Article de journal

Dans: Nucleic Acids Res, vol. 51, iss. 12, p. 6479-6494, 2023, ISSN: 1362-4962.

Résumé | Liens | BibTeX | Étiquettes: MARQUET, Unité ARN

Lavie Julie, Lalou Claude, Mahfouf Walid, Dupuy Jean-William, Lacaule Aurélie, Cywinska Agata Ars, Lacombe Didier, Duchêne Anne-Marie, Raymond Anne-Aurélie, Rezvani Hamid Reza, Ngondo Richard Patryk, Bénard Giovanni

The E3 ubiquitin ligase FBXL6 controls the quality of newly synthesized mitochondrial ribosomal proteins Article de journal

Dans: Cell Rep, vol. 42, no. 6, p. 112579, 2023, ISSN: 2211-1247.

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Vindry Caroline, Guillin Olivia, Wolff Philippe, Marie Paul, Mortreux Franck, Mangeot Philippe E, Ohlmann Théophile, Chavatte Laurent

A homozygous mutation in the human selenocysteine tRNA gene impairs UGA recoding activity and selenoproteome regulation by selenium Article de journal

Dans: Nucleic Acids Res, vol. 51, iss. 14, p. 7580-7601, 2023, ISSN: 1362-4962.

Résumé | Liens | BibTeX | Étiquettes: ARN-MS, Unité ARN

Lista María José, Jousset Anne-Caroline, Cheng Mingpan, Saint-André Violaine, Perrot Elouan, Rodrigues Melissa, Primo Carmelo Di, Gadelle Danielle, Toccafondi Elenia, Segeral Emmanuel, Berlioz-Torrent Clarisse, Emiliani Stéphane, Mergny Jean-Louis, Lavigne Marc

DNA topoisomerase 1 represses HIV-1 promoter activity through its interaction with a guanine quadruplex present in the LTR sequence Article de journal

Dans: Retrovirology, vol. 20, no. 1, p. 10, 2023, ISSN: 1742-4690.

Résumé | Liens | BibTeX | Étiquettes: MARQUET, NEGRONI, PAILLART, Unité ARN

Husser Claire, Vuilleumier Stéphane, Ryckelynck Michael

FluorMango, an RNA-Based Fluorogenic Biosensor for the Direct and Specific Detection of Fluoride Article de journal

Dans: Small, vol. 19, iss. 13, p. e2205232, 2023, ISSN: 1613-6829.

Résumé | Liens | BibTeX | Étiquettes: RYCKELYNCK, Unité ARN

Toccafondi Elenia, Kanja Marine, Winter Flore, Lener Daniela, Negroni Matteo

A snapshot on HIV-1 evolution through the identification of phylogenetic-specific properties of HIV-1 integrases M/O Article de journal

Dans: PLoS Pathog, vol. 19, no. 3, p. e1011207, 2023, ISSN: 1553-7374.

Résumé | Liens | BibTeX | Étiquettes: NEGRONI, Unité ARN

Girardi Erika, Messmer Mélanie, Lopez Paula, Fender Aurélie, Chicher Johana, Chane-Woon-Ming Béatrice, Hammann Philippe, Pfeffer Sébastien

Proteomics-based determination of double-stranded RNA interactome reveals known and new factors involved in Sindbis virus infection Article de journal

Dans: RNA, vol. 29, no. 3, p. 361–375, 2023, ISSN: 1469-9001.

Résumé | Liens | BibTeX | Étiquettes: PFEFFER, PPSE, Unité ARN

Dufossez Robin, Ursuegui Sylvain, Baudrey Stephanie, Pernod Ketty, Mouftakhir Safae, Oulad-Abdelghani Mustapha, Mosser Michel, Chaubet Guilhem, Ryckelynck Michael, Wagner Alain

Droplet Surface Immunoassay by Relocation (D-SIRe) for High-Throughput Analysis of Cytosolic Proteins at the Single-Cell Level Article de journal

Dans: Anal Chem, vol. 95, iss. 9, p. 4470-4478, 2023, ISSN: 1520-6882.

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Lee Seungjae, Jee David, Srivastava Sid, Yang Acong, Ramidi Abhinav, Shang Renfu, Bortolamiol-Becet Diane, Pfeffer Sébastien, Gu Shuo, Wen Jiayu, Lai Eric C

Promiscuous splicing-derived hairpins are dominant substrates of tailing-mediated defense of miRNA biogenesis in mammals Article de journal

Dans: Cell Rep, vol. 42, no. 2, p. 112111, 2023, ISSN: 2211-1247.

Résumé | Liens | BibTeX | Étiquettes: PFEFFER, Unité ARN

Giegé Richard, Eriani Gilbert

The tRNA identity landscape for aminoacylation and beyond Article de journal

Dans: Nucleic Acids Res, vol. 51, no. 4, p. 1528–1570, 2023, ISSN: 1362-4962.

Résumé | Liens | BibTeX | Étiquettes: ERIANI, GIEGE, Unité ARN

Husser Claire, Baudrey Stéphanie, Ryckelynck Michael

High-Throughput Development and Optimization of RNA-Based Fluorogenic Biosensors of Small Molecules Using Droplet-Based Microfluidics Article de journal

Dans: Methods Mol Biol, vol. 2570, p. 243–269, 2023, ISSN: 1940-6029.

Résumé | Liens | BibTeX | Étiquettes: RYCKELYNCK, Unité ARN

Gosset-Erard Clarisse, Didierjean Mévie, Pansanel Jérome, Lechner Antony, Wolff Philippe, Kuhn Lauriane, Aubriet Frédéric, Leize-Wagner Emmanuelle, Chaimbault Patrick, François Yannis-Nicolas

Nucleos'ID: A New Search Engine Enabling the Untargeted Identification of RNA Post-transcriptional Modifications from Tandem Mass Spectrometry Analyses of Nucleosides Article de journal

Dans: Anal Chem, vol. 95, iss. 2, p. 1608-1617, 2023, ISSN: 1520-6882.

Résumé | Liens | BibTeX | Étiquettes: ARN-MS, PPSE, Unité ARN

Ponce José R Jaramillo, Théobald-Dietrich Anne, Bénas Philippe, Paulus Caroline, Sauter Claude, Frugier Magali

Solution x-ray scattering highlights discrepancies in Plasmodium multi-aminoacyl-tRNA synthetase complexes Article de journal

Dans: Protein Sci, p. e4564, 2023, ISSN: 1469-896X.

Résumé | Liens | BibTeX | Étiquettes: FRUGIER, SAUTER, Unité ARN

L. Urzhumtseva, V. Lunin, A. Urzhumtsev

Algorithms and programs for the shell decomposition of oscillating functions in space Article de journal

Dans: J Appl Cryst, vol. 56, no. 1, p. 302-311, 2023.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, Urzhumtseva

Giuliodori Anna Maria, Belardinelli Riccardo, Duval Melodie, Garofalo Raffaella, Schenckbecher Emma, Hauryliuk Vasili, Ennifar Eric, Marzi Stefano

CspA stimulates translation in the cold of its own mRNA by promoting ribosome progression Article de journal

Dans: Front Microbiol, vol. 14, p. 1118329, 2023, ISSN: 1664-302X.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, ROMBY, Unité ARN

Giuliodori Anna Maria, Londei Paola, Marzi Stefano

Editorial: Interview with the translational apparatus: stories of intriguing circuits and mechanisms to regulate translation in bacteria, volume II Divers

2023, ISSN: 1664-302X.

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2022

Westhof E

Data, data, burning deep, in the forests of the net Article de journal

Dans: Biochem Biophys Res Commun, vol. 633, p. 42-44, 2022, ISSN: 1090-2104.

Résumé | Liens | BibTeX | Étiquettes: Unité ARN, WESTHOF

Urzhumtsev Alexandre G, Urzhumtseva Ludmila M, Lunin Vladimir Y

Direct calculation of cryo-EM and crystallographic model maps for real-space refinement Article de journal

Dans: Acta Crystallogr D Struct Biol, vol. 78, no. Pt 12, p. 1451–1468, 2022, ISSN: 2059-7983.

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Neyroud Anne Sophie, Rudinger-Thirion Joëlle, Frugier Magali, Riley Lisa G, Bidet Maud, Akloul Linda, Simpson Andrea, Gilot David, Christodoulou John, Ravel Célia, Sinclair Andrew H, Belaud-Rotureau Marc-Antoine, Tucker Elena J, Jaillard Sylvie

LARS2 variants can present as premature ovarian insufficiency in the absence of overt hearing loss Article de journal

Dans: Eur J Hum Genet, vol. 31, iss. 4, p. 453-460, 2022, ISSN: 1476-5438.

Résumé | Liens | BibTeX | Étiquettes: FRUGIER, Unité ARN

Mráziková Klaudia, Kruse Holger, Mlýnský Vojtěch, Auffinger Pascal, Šponer Jiří

Multiscale Modeling of Phosphate···π Contacts in RNA U-Turns Exposes Differences between Quantum-Chemical and AMBER Force Field Descriptions Article de journal

Dans: J Chem Inf Model, vol. 62, iss. 23, p. 6182-6200, 2022, ISSN: 1549-960X.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, Unité ARN

Girardi Erika, Messmer Melanie, Lopez Paula, Fender Aurelie, Chicher Johana, Chane-Woon-Ming Beatrice, Hammann Philippe, Pfeffer Sebastien

Proteomics-based determination of double stranded RNA interactome reveals known and new factors involved in Sindbis virus infection Article de journal

Dans: RNA, vol. 29, iss. 3, p. 361-375, 2022, ISSN: 1469-9001.

Résumé | Liens | BibTeX | Étiquettes: PFEFFER, PPSE, Unité ARN

Xu Rui, Lou Yanyan, Tidu Antonin, Bulet Philippe, Heinekamp Thorsten, Martin Franck, Brakhage Axel, Li Zi, Liégeois Samuel, Ferrandon Dominique

The Toll pathway mediates Drosophila resilience to Aspergillus mycotoxins through specific Bomanins Article de journal

Dans: EMBO Rep, p. e56036, 2022, ISSN: 1469-3178.

Résumé | Liens | BibTeX | Étiquettes: ERIANI, ferrandon, M3i, MARTIN, Unité ARN

Belinite Margarita, Khusainov Iskander, Marzi Stefano

30S Ribosomal Subunit Purification and Its Biochemical and Cryo-EM Analysis Article de journal

Dans: Bio Protoc, vol. 12, no. 20, 2022, ISSN: 2331-8325.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN