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158 entries « 1 of 4 »

2024

A. Niedner-Boblenz, T. Monecke, J. Hennig, M. Klostermann, M. Hofweber, A.P. Gerber, I. Anosova, W. Mayer, M. Müller, R. Heym, R. Janowski, C. Paillart J., D. Dormann, K. Zarnack, M. Sattler

Intrinsically disordered RNA-binding motifs cooperate to catalyze RNA folding and drive phase separation Journal Article

In: bioRxiv, 2024.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Quignon E., Ferhadian D., Hache A., Vivet-Boudou V., Isel C., Printz-Schweigert A., Donchet A., Crépin T., Marquet R.

Structural Impact of the Interaction of the Influenza A Virus Nucleoprotein with Genomic RNA Segments Journal Article

In: Viruses, vol. 16, no. 3, pp. 421, 2024, ISBN: 10.3390/v16030421.

Abstract | Links | BibTeX | Tags: MARQUET, MARQUET influenza A virus NP nucleoprotein vRNA RNA structure RNA chaperon chemical probing, Unité ARN

2023

LABARONNE E., DECIMO D., BERTRAND L., GUIGUETTAZ L., SOHIER T. J. M., CLUET D., VIVET-BOUDOU V., DAHOUI C., FRANçOIS P., HATIN I., LAMBOTTE O., SAMRI A., AUTRAN B., ETIENNE L., GOUJON C., PAILLART J. -C., NAMY O., RAMIREZ B. C., OHLMANN T., MORRIS A., RICCI E. P.

Extensive uORF translation from HIV-1 transcripts elicits specific T cell immune responses in infected individuals and conditions DDX3 dependency for expression of main ORFs Journal Article

In: (bioRxiv & medRxiv), 2023.

Links | BibTeX | Tags: PAILLART, Unité ARN

Jakob Celia, Lovate Gabriel L, Desirò Daniel, Gießler Lara, Smyth Redmond P, Marquet Roland, Lamkiewicz Kevin, Marz Manja, Schwemmle Martin, Bolte Hardin

Sequential disruption of SPLASH-identified vRNA-vRNA interactions challenges their role in influenza A virus genome packaging Journal Article

In: Nucleic Acids Res, vol. 51, iss. 12, pp. 6479-6494, 2023, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: MARQUET, Unité ARN

Lista María José, Jousset Anne-Caroline, Cheng Mingpan, Saint-André Violaine, Perrot Elouan, Rodrigues Melissa, Primo Carmelo Di, Gadelle Danielle, Toccafondi Elenia, Segeral Emmanuel, Berlioz-Torrent Clarisse, Emiliani Stéphane, Mergny Jean-Louis, Lavigne Marc

DNA topoisomerase 1 represses HIV-1 promoter activity through its interaction with a guanine quadruplex present in the LTR sequence Journal Article

In: Retrovirology, vol. 20, no. 1, pp. 10, 2023, ISSN: 1742-4690.

Abstract | Links | BibTeX | Tags: MARQUET, NEGRONI, PAILLART, Unité ARN

2022

Bonaventure Boris, Rebendenne Antoine, Valadão Ana Luiza Chaves, Arnaud-Arnould Mary, Gracias Ségolène, de Gracia Francisco Garcia, McKellar Joe, Labaronne Emmanuel, Tauziet Marine, Vivet-Boudou Valérie, Bernard Eric, Briant Laurence, Gros Nathalie, Djilli Wassila, Courgnaud Valérie, Parrinello Hugues, Rialle Stéphanie, Blaise Mickaël, Lacroix Laurent, Lavigne Marc, Paillart Jean-Christophe, Ricci Emiliano P, Schulz Reiner, Jouvenet Nolwenn, Moncorgé Olivier, Goujon Caroline

The DEAD box RNA helicase DDX42 is an intrinsic inhibitor of positive-strand RNA viruses Journal Article

In: EMBO Rep, pp. e54061, 2022, ISSN: 1469-3178.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Jakob Celia, Paul-Stansilaus Rithu, Schwemmle Martin, Marquet Roland, Bolte Hardin

The influenza A virus genome packaging network - complex, flexible and yet unsolved Journal Article

In: Nucleic Acids Res, vol. 50, iss. 16, pp. 9023-9038, 2022, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: MARQUET, Unité ARN

Libre C, Seissler T, Guerrero S, Batisse J, Verriez C, Stupfler B, Gilmer O, Cabrera-Rodriguez R, Weber M, Valenzuela-Fernandez A, Cimarelli A, Etienne L, Marquet R, Paillart J C

A Conserved uORF Regulates APOBEC3G Translation and Is Targeted by HIV-1 Vif Protein to Repress the Antiviral Factor Journal Article

In: Biomedicines, vol. 10, no. 1, pp. 13, 2022.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Gilmer O., Mailler E., Paillart J. C., Mouhand A., Tisne C., Mak J., Smyth R. P., Marquet R., Vivet-Boudou V.

Structural maturation of the HIV-1 RNA 5' untranslated region by Pr55(Gag) and its maturation products Journal Article

In: RNA Biol, vol. 19, no. 1, pp. 191-205, 2022, ISBN: 35067194, (1555-8584 (Electronic) 1547-6286 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Bernacchi S.

Visualization of Retroviral Gag-Genomic RNA Cellular Interactions Leading to Genome Encapsidation and Viral Assembly: An Overview Journal Article

In: Viruses, vol. 14, no. 2, 2022, ISBN: 35215917, (1999-4915 (Electronic) 1999-4915 (Linking) Journal Article Review Research Support, Non-U.S. Gov't).

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

2021

Pitchai F, Chameettachal A, Vivet-Boudou V, Ali L M, Pillai V N, Krishnan A, Bernacchi S, Mustafa F, R Marquet, Rizvi T A

Identification of Pr78Gag binding sites on the Mason-Pfizer monkey virus genomic RNA packaging determinants Journal Article

In: J Mol Biol, vol. 433, no. 10, pp. 166923, 2021.

Abstract | Links | BibTeX | Tags: MARQUET, Retroviruses Gag-RNA interactions Purines Footprinting hSHAPE, Unité ARN

Busienne C, Marquet R, Paillart J C, Bernacchi S

Post-Translational Modifications of Retroviral HIV-1 Gag Precursors: An Overview of Their Biological Role Journal Article

In: Int. J. Mol. Sci., vol. 22, no. 6, pp. 2871, 2021.

Abstract | Links | BibTeX | Tags: HIV-1, MARQUET, PAILLART, post-translational modifications, Pr55Gag precursor, retroviral Gag precursors, retroviral life cycle, Unité ARN

Chameettachal A, Vivet-Boudou V, Pitchai F N, N Pillai V, Ali L M, Krishnan A, Bernacchi S, Mustafa F, Marquet R, Rizvi T A

A purine loop and the primer binding site are critical for the selective encapsidation of mouse mammary tumor virus genomic RNA by Pr77Gag Journal Article

In: Nucleic Acids Res, vol. 49, no. 8, pp. 4668-4688, 2021.

BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Stupfler B, Verriez C, Gallois-Montbrun S, Marquet R, Paillart J C

Degradation-independent inhibition of APOBEC3G by HIV-1 Vif protein Journal Article

In: Viruses, vol. 13, no. 4, pp. 617, 2021.

Abstract | Links | BibTeX | Tags: APOBEC3G, deamination, encapsidation, HIV, MARQUET, PAILLART, proteasome, RNP granules, Translation, ubiquitin, Unité ARN, vif

Goettsch W, Beerenwinkel N, Deng L, Dolken L, Dutilh B E, Erhard F, Kaderali L, von Kleist M, Marquet R, Matthijnssens J, McCallin S, McMahon D, Rattei T, Rij R P Van, Robertson D L, Schwemmle M, Stern-Ginossar N, Marz M

ITN-VIROINF: Understanding (Harmful) Virus-Host Interactions by Linking Virology and Bioinformatics Journal Article

In: Viruses, vol. 13, no. 5, 2021, ISBN: 33925452, (1999-4915 (Electronic) 1999-4915 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: MARQUET, Unité ARN

Gilmer O, Quignon E, Jousset A C, Paillart J C, Marquet R, Vivet-Boudou V

Chemical and Enzymatic Probing of Viral RNAs: From Infancy to Maturity and Beyond Journal Article

In: Viruses, vol. 13, no. 10, pp. 1894, 2021.

Abstract | Links | BibTeX | Tags: Capillary electrophoresis, chemical probe, enzymatic probe, high-throughput sequencing, MARQUET, mutational profiling, PAILLART, RNA, SHAPE, structure, Unité ARN

Lyonnais S., Sadiq S. K., Lorca-Oro C., Dufau L., Nieto-Marquez S., Escriba T., Gabrielli N., Tan X., Ouizougun-Oubari M., Okoronkwo J., Reboud-Ravaux M., Gatell J. M., Marquet R., Paillart J. C., Meyerhans A., Tisne C., Gorelick R. J., Mirambeau G.

The HIV-1 Nucleocapsid Regulates Its Own Condensation by Phase-Separated Activity-Enhancing Sequestration of the Viral Protease during Maturation Journal Article

In: Viruses, vol. 13, no. 11, 2021, ISBN: 34835118, (1999-4915 (Electronic) 1999-4915 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Welker L, Paillart J C, Bernacchi S

Importance of Viral Late Domains in Budding and Release of Enveloped RNA Viruses Journal Article

In: Viruses, vol. 13, no. 8, pp. 1559, 2021, ISBN: 34452424, (1999-4915 (Electronic) 1999-4915 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: PAILLART, Unité ARN

2020

Bernacchi S

Special Issue "Function and Structure of Viral Ribonucleoproteins Complexes" Journal Article

In: Viruses, vol. 12, no. 12, pp. E1355, 2020.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Ali L M, Pitchai F N, Vivet-Boudou V, Chameettachal A, Jabeen A, Pillai V N, Mustafa F, Marquet R, Rizvi T A

Role of Purine-Rich Regions in Mason-Pfizer Monkey Virus (MPMV) Genomic RNA Packaging and Propagation Journal Article

In: Frontiers in Microbiology, no. 11, pp. 595410, 2020.

Abstract | Links | BibTeX | Tags: base paired purines, MARQUET, Mason-Pfizer monkey virus, PAILLART, retroviruses, RNA packaging, RNA secondary structure, RNA-Gag interaction, SHAPE, single-stranded purines, Unité ARN

Boutant E, Bonzi J, Anton H, Nasim M Bin, Cathagne R, Real E, Dujardin D, Carl P, Didier P, Paillart J C, Marquet R, Mely Y, de Rocquigny H, Bernacchi S

Zinc Fingers in HIV-1 Gag Precursor Are Not Equivalent for gRNA Recruitment at the Plasma Membrane Journal Article

In: Biophys J, vol. 119, no. 2, pp. 419-433, 2020, ISBN: 32574557.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

R Marquet C Verriez J-C Paillart, Stupfler B

Les APOBEC : histoire d’une famille de protéines antivirales et mutagènes. Journal Article

In: Virologie, vol. 24, no. 6, pp. 381-418, 2020.

Abstract | BibTeX | Tags: APOBEC3, cancer, Facteurs de restriction, MARQUET, PAILLART, Unité ARN, vif, VIH-1

Bernacchi S, Ennifar E

Analysis of the HIV-1 Genomic RNA Dimerization Initiation Site Binding to Aminoglycoside Antibiotics Using Isothermal Titration Calorimetry Book Chapter

In: Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, vol. 2113, pp. 237-250, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006318.

Abstract | Links | BibTeX | Tags: Aminoglycosides, dimerization, drug interaction, ENNIFAR, HIV-1, initiation site, ITC, MARQUET, PAILLART, RNA, Thermodynamics RNA, Unité ARN, Viral

Bernacchi S

Dynamic Light Scattering Analysis on RNA Associated to Proteins Book Chapter

In: Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, vol. 2113, pp. 31-39, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006306.

Abstract | Links | BibTeX | Tags: Dynamic light scattering, Hydrodynamic radius Diffusion coefficient, MARQUET, PAILLART, Pr55Gag, precursor, Protein-RNA interactions, Unité ARN, Viral assembly, Viral genomic RNA Viral spliced RNA

Quang N Nguyen, Goudey S, Ségéral E, Mohammad A, Lemoine S, Blugeon C, Versapuech M, Paillart J C, Berlioz-Torrent C, Emiliani S, Gallois-Montbrun S

Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection Journal Article

In: Retrovirology, vol. 17, no. 1, pp. 25, 2020, ISBN: 32807178.

Abstract | Links | BibTeX | Tags: HIV RNA Alternative splicing Viral transcriptome ONT long-read sequencing, MARQUET, PAILLART, Unité ARN

2019

Mailler E, Paillart J C, Marquet R, Smyth R P, Vivet-Boudou V

The evolution of RNA structural probing methods: From gels to next-generation sequencing Journal Article

In: Wiley Interdiscip Rev RNA, vol. 10, no. 2, pp. e1518, 2019, ISBN: 30485688.

Abstract | Links | BibTeX | Tags: MARQUET, NGS RNA probing structure, PAILLART, Unité ARN

Krishnan A, Pillai V, Chameettachal A, Ali L M, Pitchai F Nuzra Nagoor, Tariq S, Mustafa F, Marquet R, Rizvi T A

Purification and Functional Characterization of a Biologically Active Full-Length Feline Immunodeficiency Virus (FIV) Pr50Gag. Journal Article

In: Viruses, vol. 11, no. 8, pp. 689, 2019, ISBN: 31357656.

Abstract | Links | BibTeX | Tags: Gag protein purification His-tag fusion protein Pr50Gag protein expression feline immunodeficiency virus (FIV) retroviral RNA packaging viral assembly, MARQUET, PAILLART, Unité ARN

Kalloush R M, Vivet-Boudou V, Ali L M, Pillai V, Mustafa F, Marquet R, Rizvi T A

Stabilizing role of structural elements within the 5´ Untranslated Region (UTR) and gag sequences in Mason-Pfizer monkey virus (MPMV) genomic RNA packaging Journal Article

In: RNA Biol, vol. 16, no. 5, pp. 612-625, 2019, ISBN: 30773097.

Abstract | Links | BibTeX | Tags: MARQUET, MARQUET PAILLART Mason-Pfizer monkey virus (MPMV) RNA packaging RNA secondary structure Retroviruses U5/Gag LRIs gag, Mason-Pfizer monkey virus (MPMV) RNA packaging RNA secondary structure Retroviruses U5/Gag LRIs gag, PAILLART, Unité ARN

2018

Smyth R P, Smith M R, Jousset A C, Despons L, Laumond G, Decoville T, Cattenoz P, Moog C, Jossinet F, Mougel M, Paillart J C, von Kleist M, Marquet R

In cell mutational interference mapping experiment (in cell MIME) identifies the 5′ polyadenylation signal as a dual regulator of HIV-1 genomic RNA production and packaging Journal Article

In: Nucleic Acids Res, vol. 46, no. 9, pp. e57, 2018, ISBN: 29514260.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Pitchai F N N, Ali L, Pillai V N, Chameettachal A, Ashraf S S, Mustafa F, Marquet R, Rizvi T A

Expression, purification, and characterization of biologically active full-length Mason-Pfizer monkey virus (MPMV) Pr78Gag Journal Article

In: Sci Rep, vol. 8, no. 1, pp. 11793, 2018, ISBN: 30087395.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Mustafa F, Vivet-Boudou V, Jabeen A, Ali L M, Kalloush R M, Marquet R, Rizvi T A

The bifurcated stem loop 4 (SL4) is crucial for efficient packaging of mouse mammary tumor virus (MMTV) genomic RNA Journal Article

In: RNA Biol, vol. 15, no. 8, pp. 1047-1059, 2018, ISBN: 29929424.

Abstract | Links | BibTeX | Tags: MARQUET, Mouse mammary tumor virus RNA packaging and dimerization RNA secondary structure Retroviruses palindrome, PAILLART, Unité ARN

Ferhadian D, Contrant M, Printz-Schweigert A, Smyth R P, Paillart J C, Marquet R

Structural and functional motifs in influenza virus RNAs Journal Article

In: Front Microbiol, vol. 9, pp. 599, 2018, ISBN: 29651275.

Abstract | Links | BibTeX | Tags: CRNA RNA RNA structure influenza influenza A virus promoter vRN, MARQUET, PAILLART, Unité ARN

Dubois N, Marquet R, Paillart J C, Bernacchi S

Retroviral RNA dimerization: from structure to functions Journal Article

In: Front Microbiol, vol. 9, pp. 527, 2018, ISBN: 29623074.

Abstract | Links | BibTeX | Tags: HIV MuLV RNA dimerization function retrovirus structure, MARQUET, PAILLART, Unité ARN

Dubois N, Khoo K K, Ghossein S, Seissler T, Wolff P, McKinstry W J, Mak J, Paillart J C, Marquet R, Bernacchi S

The C-terminal p6 domain of the HIV-1 Pr55Gag precursor is required for specific binding to the genomic RNA. Journal Article

In: RNA Biol, vol. 15, no. 7, pp. 923-936, 2018, ISBN: 29954247.

Abstract | Links | BibTeX | Tags: ENNIFAR, HIV-1 Pr55Gag RNA-protein binding specificity fluorescence spectroscopy genomic RNA p6 domain, MARQUET, PAILLART, Unité ARN

Chameettachal A, Pillai V N, Ali L M, Pitchai F N N, Ardah M T, Mustafa F, Marquet R, Rizvi T A

Biochemical and Functional Characterization of Mouse Mammary Tumor Virus Full-Length Pr77Gag Expressed in Prokaryotic and Eukaryotic Cells Journal Article

In: Viruses, vol. 10, no. 6, pp. 334, 2018, ISBN: 29912170.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Pr77Gag RNA packaging RNA–Gag interactions RNA–protein interaction mouse mammary tumor virus (MMTV) protein assembly protein expression protein purification retrovirus, Unité ARN

Meshri S E El, Boutant E, Mouhand A, Thomas A, Larue V, Richert L, Vivet-Boudou V, Mély Y, Tisné C, Muriaux D, de Rocquigny H

The NC domain of HIV-1 Gag contributes to the interaction of Gag with TSG101 Journal Article

In: Biochim Biophys Acta-Gen Subj, vol. 1862, no. 6, pp. 1421-1431, 2018, ISBN: 29571744.

Abstract | Links | BibTeX | Tags: FRET Gag HIV NMR Nucleocapsid TSG101, MARQUET, PAILLART, Unité ARN

2017

Seissler T, Marquet R, Paillart J C

Hijacking of the Ubiquitin/Proteasome Pathway by the HIV Auxiliary Proteins Journal Article

In: Viruses, vol. 9,