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1191 entries « 1 of 24 »

2021

Vicens Q, Bochler A, Jobe A, Frank J, Hashem Y

Interaction Networks of Ribosomal Expansion Segments in Kinetoplastids Book Chapter

96 , pp. 433-450, Subcellular Biochemistry, 2021.

Abstract | Links | BibTeX | Tags: Eukaryotic translation, Expansion segment, Kinetoplastid parasite, Ribosomal RNA, Ribosome structure, Unité ARN

Bec G, Ennifar E

switchSENSE Technology for Analysis of DNA Polymerase Kinetics Book Chapter

2247 , pp. 145-153, Methods in Molecular Biology, 2021.

Abstract | BibTeX | Tags: Biosensor, DNA polymerase, ENNIFAR, HIV reverse transcriptase, Kinetics, switchSENSE technology, Unité ARN

Libre C, Seissler T, Guerrero S, Batisse J, Verriez C, Stupfler B, Gilmer O, Weber M M, Cimarelli A, Etienne L, Marquet R, Paillart J C

A conserved uORF impacts APOBEC3G translation and is essential for translational inhibition by the HIV-1 Vif protein Journal Article

bioRxiv, 2021.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Lalaouna D, Fochesato S, Harir M, Ortet P, Schmitt-Kopplin P, Heulin T, Achouak W

Amplifying and Fine-Tuning Rsm sRNAs Expression and Stability to Optimize the Survival of Pseudomonas brassicacerum in Nutrient-Poor Environments Journal Article

Microorganisms, 9 (2), pp. 250, 2021.

Abstract | Links | BibTeX | Tags: GacA-dependent, nutritional stress, Pseudomonas brassicacearum, ROMBY, Rsm sRNAs, sRNAs stability, Unité ARN

Li G, Eriani G, Wang E D, Zhou X L

Distinct pathogenic mechanisms of various RARS1 mutations in Pelizaeus-Merzbacher-like disease Journal Article

Sci China Life Sci, pp. on press, 2021, ISBN: 33515434, (1869-1889 (Electronic) 1674-7305 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: aminoacyl-tRNA synthetase (aaRS), central nervous system (CNS), ERIANI, Protein Biosynthesis, translation initiation, tRNA, Unité ARN

Mercier N, Prévost K, Massé E, Romby P, Caldelari I, Lalaouna D

MS2-Affinity Purification Coupled with RNA Sequencing in Gram-Positive Bacteria Journal Article

J Vis Exp, pp. e61731, 2021.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Pitchai F N, Chameettachal A, Vivet-Boudou V, Ali L M, Pillai V N, Krishnan A, Bernacchi S, Mustafa F, Marquet R, Rizvi T A

Identification of Pr78Gag binding sites on the Mason-Pfizer monkey virus genomic RNA packaging determinants. Journal Article

J. Mol. Biol, pp. in press, 2021.

BibTeX | Tags: MARQUET, PAILLART, Unité ARN

2020

Thomès L, Lescure A

Mosaic evolution of the phosphopantothenate biosynthesis pathway in bacteria and archaea Journal Article

Genome Biology and Evolution, 13 (2), pp. evaa262, 2020.

Abstract | Links | BibTeX | Tags: Candidatus poribacteria, Coenzyme A, LESCURE, phosphopantothenate pathway, Unité ARN

Abaeva I S, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova T V, Hashem Y, Hellen C U T

The Halastavi árva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism Journal Article

Cell Reports, 33 (10), pp. 108476, 2020.

Abstract | Links | BibTeX | Tags: Cricket paralysis virus, Dicistrovirus, ENNIFAR, Halastavi árva virus; IRES, intergenic region, internal ribosomal entry site, pseudoknot, Ribosome, SERBP1, SERPINE1 mRNA binding protein 1, Unité ARN

Tidu A, Janvier A, Schaeffer L, Sosnowski P, Kuhn L, Hammann P, Westhof E, Eriani G, Martin F

The viral protein NSP1 acts as a ribosome gatekeeper for shutting down host translation and fostering SARS-CoV-2 translation Journal Article

RNA, in press , 2020.

Abstract | Links | BibTeX | Tags: ERIANI, PPSE, Unité ARN

Auffinger P, Ennifar E, D'Ascenzo L

Deflating the RNA Mg 2+ bubble. Stereochemistry to the rescue! Journal Article

RNA, in press , 2020.

Abstract | Links | BibTeX | Tags: cryo-EM, ENNIFAR, ionic atmosphere, solvent, Unité ARN, validation, X-Ray

Hennig O, Philipp S, Bonin S, Rollet K, Kolberg T, Jühling T, Betat H, Sauter C, Mörl M

Adaptation of the Romanomermis culicivorax CCA-Adding Enzyme to Miniaturized Armless tRNA Substrates Journal Article

International Journal of Molecular Sciences, 21 (23), pp. E9047, 2020.

Abstract | Links | BibTeX | Tags: CCA-adding enzyme, co-evolution, evolutionary plasticity, FRUGIER, minimalized armless tRNAs, tRNA nucleotidyltransferase, Unité ARN

Hayoun K, Geersens E, Laczny C C, Halder R, Sánchez Lázaro C, Manna A, Bringel F, Ryckelynck M, Muller Wilmesand P E E L, Alpha-Bazin B, Armengaud J, Vuilleumier S

Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics Journal Article

Microorganisms, 8 (12), pp. E1876, 2020.

Abstract | Links | BibTeX | Tags: dcm genes, dehalogenation, dichloromethane, differential proteomics, genome sequencing, Hyphomicrobium, Nanopore, pan-proteomics, RYCKELYNCK, Unité ARN

Bernacchi S

Special Issue "Function and Structure of Viral Ribonucleoproteins Complexes" Journal Article

Viruses, 12 (12), pp. E1355, 2020.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Li B, Cao Y, Westhof E, Miao Z

Advances in RNA 3D Structure Modeling Using Experimental Data Journal Article

Front Genet ., 11 (574485), 2020.

Abstract | Links | BibTeX | Tags: 3D shape, chemical probing, RNA structure, RNA-puzzles, structure prediction, Unité ARN, WESTHOF

Duvergé A, Negroni M

Pseudotyping Lentiviral Vectors: When the Clothes Make the Virus Journal Article

Viruses, 12 (11), pp. 1311, 2020.

Abstract | Links | BibTeX | Tags: envelope proteins, gene therapy, lentiviral vectors, NEGRONI, pseudotyping, Unité ARN

Ali L M, Pitchai F N, Vivet-Boudou V, Chameettachal A, Jabeen A, Pillai V N, Mustafa F, Marquet R, Rizvi T A

Role of Purine-Rich Regions in Mason-Pfizer Monkey Virus (MPMV) Genomic RNA Packaging and Propagation Journal Article

Frontiers in Microbiology, (11), pp. 595410, 2020.

Abstract | Links | BibTeX | Tags: base paired purines, MARQUET, Mason-Pfizer monkey virus, PAILLART, retroviruses, RNA packaging, RNA secondary structure, RNA-Gag interaction, SHAPE, single-stranded purines, Unité ARN

Abel S, Marchi M, Solier J, Finet S, Brillet K, Bonneté F

Structural insights into the membrane receptor ShuA in DDM micelles and in a model of gram-negative bacteria outer membrane as seen by SAXS and MD simulations Journal Article

Biochim Biophys Acta Biomembr, in press , 2020.

Abstract | Links | BibTeX | Tags: DDM, ENNIFAR, Membrane transporter ShuA, Molecular dynamics simulations, Outer membrane model, SEC-MALLS, SEC-SAXS, Unité ARN

Petitjean O, Girardi E, Ngondon RP, Lupashin V, Pfeffer S

Genome-Wide CRISPR-Cas9 Screen Reveals the Importance of the Heparan Sulfate Pathway and the Conserved Oligomeric Golgi Complex for Synthetic Double-Stranded RNA Uptake and Sindbis Virus Infection Journal Article

mSphere, 5 (6), pp. e00914-20, 2020.

Abstract | Links | BibTeX | Tags: complex oligomeric Golgi complex, CRISPR-Cas9 screen, double-stranded RNA, heparan-sulfate, PFEFFER, Transfection, Unité ARN, virus

Despons L, Martin F

How Many Messenger RNAs Can Be Translated by the START Mechanism? Journal Article

International Journal of Molecular Sciences, 21 (21), pp. 8373, 2020.

Abstract | Links | BibTeX | Tags: ERIANI, LESCURE, mRNA, Ribosome, secondary structures, START, translation initiation, Unité ARN

Wolff P, Villette C, Zumsteg J, Heintz D, Antoine L, Chane-Woon-Ming B, Droogmans L, Grosjean H, Westhof E

Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea Journal Article

RNA, 26 (12), pp. 1957-1975, 2020.

Abstract | Links | BibTeX | Tags: (hyper)thermophiles Archaea mass spectrometry modifications tRNA, ARN-MS, ENNIFAR, Unité ARN, WESTHOF

Westhof E, Liang S, Tong X, Ding X, Zheng L, Dai F

Unusual tertiary pairs in eukaryotic tRNA-Ala Journal Article

RNA, 26 (11), pp. 1519-1529, 2020.

Abstract | Links | BibTeX | Tags: Ala Gly insects mammals tRNA, Unité ARN, WESTHOF

Ryckelynck M

Development and Applications of Fluorogen/Light-Up RNA Aptamer Pairs for RNA Detection and More Book Chapter

2166 , pp. 73-102, RNA Tagging, 2020.

Abstract | Links | BibTeX | Tags: aptamer, biosensing, Engineering, fluorogen, Functional screening, Live-cell imaging, RNA, RYCKELYNCK, SELEX, Unité ARN

Lalaouna D, Romby P

Manganese: the battle of the two armies Journal Article

Project Repository Journal, 2020.

Links | BibTeX | Tags: ROMBY, Unité ARN

Wolff P, Ennifar E

Native Electrospray Ionization Mass Spectrometry of RNA-Ligand Complexes Book Chapter

Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, 2113 , pp. 111-118, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006311.

Abstract | Links | BibTeX | Tags: ARN-MS, ENNIFAR, Native mass spectrometry RNA, Unité ARN

Werner S, Schmidt L, Marchand V, Kemmer T, Falschlunger C, Sednev M V, Bec G, Ennifar E, Höbartner C, Micura R, Motorin Y, Hildebrandt A, Helm M

Machine Learning of Reverse Transcription Signatures of Variegated Polymerases Allows Mapping and Discrimination of Methylated Purines in Limited Transcriptomes Journal Article

Nucleic Acids Res, 48 (7), pp. 3734-3746, 2020, ISBN: 32095818.

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

Vileno B, Lebars I

Site-Specific Spin Labeling of RNA for NMR and EPR Structural Studies Book Chapter

Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, 2113 , pp. 217-235, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006317.

Abstract | Links | BibTeX | Tags: ENNIFAR, RNA NMR EPR Paramagnetic Spin-label, Unité ARN

Vigouroux A, Aumont-Nicaise M, Boussac A, Marty L, Bello Lo L, Legrand P, Brillet K, Schalk I J, Moréra S

A unique ferrous iron binding mode is associated to large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa Journal Article

FEBS J, 287 (2), pp. 295-309, 2020, ISBN: 31318478.

Abstract | Links | BibTeX | Tags: ENNIFAR, Pseudomonas aeruginosa iron pyoverdine siderophore solute-binding protein, Unité ARN

Trzaska C, Amand S, Bailly C, Leroy C, Marchand V, Duvernois-Berthet E, Saliou J M, Benhabiles H, Werkmeister E, Chassat T, Guilbert R, Hannebique D, Mouray A, Copin M C, Moreau P A, Adriaenssens E, Kulozik A, Westhof E, Tulasne D, Motorin Y, Rebuffat S, Lejeune F

2,6-Diaminopurine as a Highly Potent Corrector of UGA Nonsense Mutations Journal Article

Nat Commun, 11 (1), pp. 1509, 2020, ISBN: 32198346.

Abstract | Links | BibTeX | Tags: Unité ARN, WESTHOF

Trachman 3rd R J, Cojocaru R, Wu D, Piszczek G, Ryckelynck M, Unrau P J, Ferré-D'Amaré A R

Structure-Guided Engineering of the Homodimeric Mango-IV Fluorescence Turn-on Aptamer Yields an RNA FRET Pair Journal Article

Structure, 28 (7), pp. 776-785.e773, 2020, ISBN: 32386573.

Abstract | Links | BibTeX | Tags: RNA aptamer RNA fluorescence RNA structure fluorescent dye structure-guided engineering, RYCKELYNCK, Unité ARN

Théobald-Dietrich A, de Wijn R, Rollet K, Bluhm A, Rudinger-Thirion J, Paulus C, Lorber B, Thureau A, Frugier M, Sauter C

Structural Analysis of RNA by Small-Angle X-ray Scattering Book Chapter

Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, 2113 , pp. 189-215, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006316.

Abstract | Links | BibTeX | Tags: FRUGIER, IRES Integrative structural biology RNA SEC-SAXS Structure tRNA, Unité ARN

Simonetti A, Guca E, Bochler A, Kuhn L, Hashem Y

Structural Insights Into the Mammalian Late-Stage Initiation Complexes Journal Article

Cell Rep, 31 (1), pp. 107497, 2020, ISBN: 32268096.

Abstract | Links | BibTeX | Tags: ENNIFAR, PPSE, Unité ARN

Rol-Moreno J, Kuhn L, Marzi S, Simonetti A

Grad-cryo-EM: Tool to Isolate Translation Initiation Complexes From Rabbit Reticulocyte Lysate Suitable for Structural Studies Book Chapter

Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, 2113 , pp. 329-339, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006323.

Abstract | Links | BibTeX | Tags: PPSE, Unité ARN

Riley L G, Rudinger-Thirion J, Frugier M, Wilson M, Luig M, Alahakoon T I, Nixon C Y, Kirk E P, Roscioli T, Lunke S, Stark Z, Wierenga K J, Palle S, Walsh M, Higgs E, Arbuckle S, Thirukeswaran S, Compton A G, Thorburn D R, Christodoulou J

The Expanding LARS2 Phenotypic Spectrum: HLASA, Perrault Syndrome With Leukodystrophy, and Mitochondrial Myopathy Journal Article

Hum Mutat, 41 (8), pp. 1425-1434, 2020, ISBN: 32442335.

Abstract | Links | BibTeX | Tags: FRUGIER, Perrault syndrome low frequency hearing loss primary ovarian insufficiency sensorineural hearing loss, Unité ARN

Pernod K, Schaeffer L, Chicher J, Hok E, Rick C, Geslain R, Eriani G, Westhof E, Ryckelynck M, Martin F

The Nature of the Purine at Position 34 in tRNAs of 4-codon Boxes Is Correlated With Nucleotides at Positions 32 and 38 to Maintain Decoding Fidelity Journal Article

Nucleic Acids Res, 48 (11), pp. 6170-6183, 2020, ISBN: 32266934.

Abstract | Links | BibTeX | Tags: ERIANI, PPSE, RYCKELYNCK, Unité ARN, WESTHOF

Orlov I, Hemmer C, Ackerer L, Lorber B, Ghannam A, Poignavent V, Hleibieh K, Sauter C, Schmitt-Keichinger C, Belval L, Hily J M, Marmonier A, Komar V, Gersch S, Schellenberger P, Bron P, Vigne E, Muyldermans S, Lemaire O, Demangeat G, Ritzenthaler C, Klaholz B P

Structural Basis of Nanobody Recognition of Grapevine Fanleaf Virus and of Virus Resistance Loss Journal Article

Proc Natl Acad Sci U S A, 117 (20), pp. 10848-10855, 2020, ISBN: 32371486.

Abstract | Links | BibTeX | Tags: FRUGIER, GFLV nanobody structural biology virus, Unité ARN

Quang Nguyen N, Goudey S, Ségéral E, Mohammad A, Lemoine S, Blugeon C, Versapuech M, Paillart J C, Berlioz-Torrent C, Emiliani S, Gallois-Montbrun S

Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection Journal Article

Retrovirology, 17 (1), pp. 25, 2020, ISBN: 32807178.

Abstract | Links | BibTeX | Tags: HIV RNA Alternative splicing Viral transcriptome ONT long-read sequencing, MARQUET, PAILLART, Unité ARN

Miao Z, Tidu A, Eriani G, Martin F

Secondary structure of the SARS-CoV-2 5'-UTR Journal Article

RNA Biol, pp. in press, 2020, ISBN: 32965173.

Abstract | Links | BibTeX | Tags: 5ʹ-UTR SARS-CoV-2 probing secondary structure, ERIANI, Unité ARN

Miao Z, Adamiak R W, Antczak M, Boniecki M J, Bujnicki J M, Chen S J, Cheng C Y, Cheng Y, Chou F C, Das R, Dokholyan N V, Ding F, Geniesse C, Jiang Y, Joshi A, Krokhotin A, Magnus M, Mailhot O, Major F, Mann T H, Piatkowski P, Pluta R, Popenda M, Sarzynska J, Sun L, Szachniuk M, Tian S, Wang J, Wang J, Watkins A M, Wiedemann J, Xiao Y, Xu X, Yesselman J D, Zhang D, Zhang Y, Zhang Z, Zhao C, Zhao P, Zhou Y, Zok T, Zyla A, Ren A, Batey R T, Golden B L, Huang L, Lilley D M, Liu Y, Patel D J, Westhof E

RNA-Puzzles Round IV: 3D Structure Predictions of Four Ribozymes and Two Aptamers Journal Article

RNA, 26 (8), pp. 982-995, 2020, ISBN: 32371455.

Abstract | Links | BibTeX | Tags: RNA structure aptamer modeing prediction ribozyme, Unité ARN, WESTHOF

Menendez-Gil P, Caballero C J, Catalan-Moreno A, Irurzun N, Barrio-Hernandez I, Caldelari I, Toledo-Arana A

Differential evolution in 3'UTRs leads to specific gene expression in Staphylococcus Journal Article

Nucleic Acids Res, 48 (5), pp. 2544-2563, 2020, ISBN: 32016395.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Magnus M, Antczak M, Zok T, Wiedemann J, Lukasiak P, Cao Y, Bujnicki J M, Westhof E, Szachniuk M, Miao Z

RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools Journal Article

Nucleic Acids Res, 48 (2), pp. 576-588, 2020, ISBN: 31799609.

Abstract | Links | BibTeX | Tags: Unité ARN, WESTHOF

Lopez P, Girardi E, Mounce B C, Weiss A, Chane-Woon-Ming B, Messmer M, Kaukinen P, Kopp A, Bortolamiol-Becet D, Fendri A, Vignuzzi M, Brino L, Pfeffer S

High-throughput Fluorescence-Based Screen Identifies the Neuronal microRNA miR-124 as a Positive Regulator of Alphavirus Infection Journal Article

J Virol, 94 (9), pp. e02145-02119, 2020, ISBN: 32102877.

Abstract | Links | BibTeX | Tags: PFEFFER, Unité ARN

Lechner A, Wolff P, Leize-Wagner E, François Y N

Characterization of Post-Transcriptional RNA Modifications by Sheathless Capillary Electrophoresis-High Resolution Mass Spectrometry Journal Article

Anal Chem, 92 (10), pp. 7363-7370, 2020, ISBN: 32343557.

Abstract | Links | BibTeX | Tags: ARN-MS, ENNIFAR, Unité ARN

Kruse H, Mrazikova K, D'Ascenzo L, Sponer J, Auffinger P

Short but Weak! The Z-DNA lone-pair···π Conundrum Challenges Standard Carbon Van Der Waals Radii Journal Article

Angew Chem Int Ed Engl, pp. in press, 2020, ISBN: 32516461.

Abstract | Links | BibTeX | Tags: ENNIFAR, lp···pi interactions molecular recognition non-covalent interactions van der Waals radii Z-DNA, Unité ARN

Kanja M, Cappy P, Levy N, Oladosu O, Schmidt S, Rossolillo P, Winter F, Gasser R, Moog C, Ruff M, Negroni M, Lener D

NKNK: a New Essential Motif in the C-Terminal Domain of HIV-1 Group M Integrases Journal Article

J Virol, 94 (20), pp. e01035-01020, 2020, ISBN: 32727879.

Abstract | Links | BibTeX | Tags: evolution human immunodeficiency virus integrase phylogenetic groups, NEGRONI, Unité ARN

Injarabian L, Scherlinger M, Devin A, Ransac S, Lykkesfeldt J, Marteyn B S

Ascorbate maintains a low plasma oxygen level Journal Article

Sci Rep, 10 (1), pp. 10659, 2020, ISBN: 32606354.

Abstract | Links | BibTeX | Tags: MARTEYN, Unité ARN

Herzog K, Bandiera S, Pernot S, Fauvelle C, Jühling F, Weiss A, Bull A, Durand S C, Chane-Woon-Ming B, Pfeffer S, Mercey M, Lerat H, Meunier J C, Raffelsberger W, Brino L, Baumert T F, Zeisel M B

Functional microRNA screen uncovers O-linked N-acetylglucosamine transferase as a host factor modulating hepatitis C virus morphogenesis and infectivity Journal Article

Gut, 69 (2), pp. 380-392, 2020, ISBN: 31076402.

Abstract | Links | BibTeX | Tags: HCV hepatitis C hepatocyte molecular mechanisms, PFEFFER, Unité ARN

Girardi E, Pfeffer S, Baumert T F, Majzoub K

Roadblocks and fast tracks: How RNA binding proteins affect the viral RNA journey in the cell Journal Article

Semin Cell Dev Biol, S1084-9521 (20), pp. 30091-4, 2020, ISBN: 32847707.

Abstract | Links | BibTeX | Tags: Innate Immunity RNA biology RNA viruses Technology Viral RNA sensing Viral Translation Virology., PFEFFER, Unité ARN

Ghosh S, Guimaraes J C, Lanzafame M, Schmidt A, Syed A P, Dimitriades B, Börsch A, Ghosh S, Mittal N, Montavon T, Correia A L, Danner J, Meister G, Terracciano L M, Pfeffer S, Piscuoglio S, Zavolan M

Prevention of dsRNA-induced interferon signaling by AGO1x is linked to breast cancer cell proliferation Journal Article

EMBO J, pp. in press, 2020, ISBN: 32812257.

Abstract | Links | BibTeX | Tags: Argonaute 1 breast cancer endogenous dsRNA interferon response translation readthrough, PFEFFER, Unité ARN

Georg J, Lalaouna D, Hou S, Lott S C, Caldelari I, Marzi S, Hess W R, Romby P

The power of cooperation: Experimental and computational approaches in the functional characterization of bacterial sRNAs Journal Article

Mol Microbiol, 113 (3), pp. 603-612, 2020, ISBN: 31705780.

Abstract | Links | BibTeX | Tags: ROMBY, Staphylococcus aureus CopraRNA MAPS post-transcriptional regulation sRNAs, Unité ARN

1191 entries « 1 of 24 »