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1381 entries « 1 of 28 »

2024

Urzhumtseva Ludmila, Barchet Charles, Klaholz Bruno P, Urzhumtsev Alexandre G

Program : analysing distributions of cryo-EM projections using uniform spherical grids Journal Article

In: J Appl Crystallogr, vol. 57, no. Pt 3, pp. 865–876, 2024, ISSN: 0021-8898.

Abstract | Links | BibTeX | Tags: Unité ARN

Holvec Samuel, Barchet Charles, Lechner Antony, Fréchin Léo, Silva S Nimali T De, Hazemann Isabelle, Wolff Philippe, von Loeffelholz Ottilie, Klaholz Bruno P

The structure of the human 80S ribosome at 1.9 Å resolution reveals the molecular role of chemical modifications and ions in RNA Journal Article

In: Nat Struct Mol Biol, 2024, ISSN: 1545-9985.

Abstract | Links | BibTeX | Tags: ARN-MS, Unité ARN

Omar Reine El, Abdellaoui Naoill, Coulibaly Safiatou T, Fontenille Laura, Lanza François, Gachet Christian, Freund Jean-Noel, Negroni Matteo, Kissa Karima, Tavian Manuela

Macrophage depletion overcomes human hematopoietic cell engraftment failure in zebrafish embryo Journal Article

In: Cell Death Dis, vol. 15, no. 5, pp. 305, 2024, ISSN: 2041-4889.

Abstract | Links | BibTeX | Tags: NEGRONI, Unité ARN

Lim Shey-Li, Liu Jinhong, Dupouy Gilles, Singh Gaurav, Baudrey Stéphanie, Yang Lang, Zhong Jia Yi, Chabouté Marie-Edith, Lim Boon Leong

In planta imaging of pyridine nucleotides using second-generation fluorescent protein biosensors Journal Article

In: Plant J, 2024, ISSN: 1365-313X.

Abstract | Links | BibTeX | Tags: RYCKELYNCK, Unité ARN

Niedner-Boblenz A., Monecke T., Hennig J., Klostermann M., Hofweber M., Gerber A. P., Anosova I., Mayer W., Müller M., Heym R., Janowski R., Paillart J. -C., Dormann D., Zarnack K., Sattler M., Niessing D.

Intrinsically disordered RNA-binding motifs cooperate to catalyze RNA folding and drive phase separation Journal Article

In: bioRxiv, 2024.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Pellequer Jean-Luc, Westhof Eric

Marc van Regenmortel, personal recollections on a forward-thinking editor Journal Article

In: J Mol Recognit, pp. e3080, 2024, ISSN: 1099-1352.

Abstract | Links | BibTeX | Tags: Unité ARN, WESTHOF

Messmer Mélanie, Pierson Louison, Pasquier Charline, Djordjevic Nikola, Chicher Johana, Hammann Philippe, Pfeffer Sébastien, Girardi Erika

DEAD box RNA helicase 5 is a new pro-viral host factor for Sindbis virus infection Journal Article

In: Virol J, vol. 21, no. 1, pp. 76, 2024, ISSN: 1743-422X.

Abstract | Links | BibTeX | Tags: PFEFFER, PPSE, Unité ARN

D'Agostino Mattia, Simonetti Angelita, Motta Stefano, Wolff Philippe, Romagnoli Alice, Piccinini Astra, Spinozzi Francesco, Marino Daniele Di, Teana Anna La, Ennifar Eric

Crystal structure of archaeal IF5A-DHS complex reveals insights into the hypusination mechanism Journal Article

In: Structure, 2024, ISSN: 1878-4186.

Abstract | Links | BibTeX | Tags: ARN-MS, ENNIFAR, Unité ARN

Zhang Jian-Hui, Eriani Gilbert, Zhou Xiao-Long

Pathophysiology of human mitochondrial tRNA metabolism Journal Article

In: Trends Endocrinol Metab, 2024, ISSN: 1879-3061.

Abstract | Links | BibTeX | Tags: ERIANI, Unité ARN

Brillet Karl, Janczuk-Richter Marta, Poon Amanda, Laukart-Bradley Joanne, Ennifar Eric, Lebars Isabelle

Characterization of SLA RNA promoter from dengue virus and its interaction with the viral non-structural NS5 protein Journal Article

In: Biochimie, vol. 222, pp. 87–100, 2024, ISSN: 1638-6183.

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

Soufi G El, Jorio L Di, Gerber Z, Cluzel N, Assche J Van, Delafoy D, Olaso R, Daviaud C, Loustau T, Schwartz C, Trebouet D, Hernalsteens O, Marechal V, Raffestin S, Rousset D, Lint C Van, Deleuze J F, Boni M, and O Rohr, Villain-Gambier M, Wallet C

Highly efficient and sensitive membrane-based concentration process allows quantification, surveillance, and sequencing of viruses in large volumes of wastewater Journal Article

In: Water Res, vol. 249, pp. 120959, 2024, ISSN: 1879-2448.

Abstract | Links | BibTeX | Tags: ROHR, Unité ARN

Compain Guillaume, Monsarrat Clément, Blagojevic Julie, Brillet Karl, Dumas Philippe, Hammann Philippe, Kuhn Lauriane, Martiel Isabelle, Engilberge Sylvain, Oliéric Vincent, Wolff Philippe, Burnouf Dominique Y, Wagner Jérôme, Guichard Gilles

Peptide-Based Covalent Inhibitors Bearing Mild Electrophiles to Target a Conserved His Residue of the Bacterial Sliding Clamp Journal Article

In: JACS Au, vol. 4, no. 2, pp. 432–440, 2024, ISSN: 2691-3704.

Abstract | Links | BibTeX | Tags: ARN-MS, ENNIFAR, PPSE, Unité ARN

Krishnan A., Ali L. M., Prabhu S. G., Pillai V. N., Chameettachal A., Vivet-Boudou V., Bernacchi S., Mustafa F., Marquet R., Rizvi T. A.

Identification of a putative Gag binding site critical for feline immunodeficiency virus genomic RNA packaging Journal Article

In: RNA Journal, vol. 30, pp. 68-88, 2024.

Abstract | Links | BibTeX | Tags: bernacchi, MARQUET, Unité ARN, vivet-boudou

Lechner Antony, Wolff Philippe

In-Gel Cyanoethylation for Pseudouridines Mass Spectrometry Detection of Bacterial Regulatory RNA Book Chapter

In: Véronique Arluison, Claudio Valverde (Ed.): vol. 2741, pp. 273–287, Véronique Arluison, Claudio Valverde, 2024, ISSN: 1940-6029.

Abstract | Links | BibTeX | Tags: ARN-MS, Unité ARN

Kohl Maximilian P, Chane-Woon-Ming Béatrice, Bahena-Ceron Roberto, Jaramillo-Ponce Jose, Antoine Laura, Herrgott Lucas, Romby Pascale, Marzi Stefano

Ribosome Profiling Methods Adapted to the Study of RNA-Dependent Translation Regulation in Staphylococcus aureus Book Chapter

In: Claudio ValverdeVéronique Arluison Véronique Arluison, Claudio Valverde (Ed.): vol. 2741, pp. 73–100, Véronique Arluison, Claudio Valverde, Springer, 2024, ISSN: 1940-6029.

Abstract | Links | BibTeX | Tags: MARZI, ROMBY, Unité ARN

Baldaccini Morgane, Gaucherand Léa, Chane-Woon-Ming Béatrice, Messmer Mélanie, Gucciardi Floriane, Pfeffer Sébastien

The helicase domain of human Dicer prevents RNAi-independent activation of antiviral and inflammatory pathways Journal Article

In: EMBO J, 2024, ISSN: 1460-2075.

Abstract | Links | BibTeX | Tags: PFEFFER, Unité ARN

Nerantzaki Maria, Husser Claire, Ryckelynck Michael, Lutz Jean-François

Exchanging and Releasing Information in Synthetic Digital Polymers Using a Strand-Displacement Strategy Journal Article

In: J Am Chem Soc, 2024, ISSN: 1520-5126.

Abstract | Links | BibTeX | Tags: RYCKELYNCK, Unité ARN

Quignon E., Ferhadian D., Hache A., Vivet-Boudou V., Isel C., Printz-Schweigert A., Donchet A., Crépin T., Marquet R.

Structural Impact of the Interaction of the Influenza A Virus Nucleoprotein with Genomic RNA Segments Journal Article

In: Viruses, vol. 16, no. 3, pp. 421, 2024, ISBN: 10.3390/v16030421.

Abstract | Links | BibTeX | Tags: MARQUET, MARQUET influenza A virus NP nucleoprotein vRNA RNA structure RNA chaperon chemical probing, Unité ARN

Hayek Hassan, Gross Lauriane, Alghoul Fatima, Martin Franck, Eriani Gilbert, Allmang Christine

Immunoprecipitation Methods to Isolate Messenger Ribonucleoprotein Complexes (mRNP) Book Chapter

In: vol. 3234, pp. 1–15, M. Cristina Vega, Francisco J. Fernández, Springer, 2024, ISSN: 0065-2598.

Abstract | Links | BibTeX | Tags: ERIANI, MARTIN, PPSE, Unité ARN

Janvier Aurélie, Hayek Hassan, Alghoul Fatima, Gross Lauriane, Allmang Christine, Martin Franck, Eriani Gilbert

Purification of In Vivo or In Vitro-Assembled RNA-Protein Complexes by RNA Centric Methods Book Chapter

In: vol. 3234, pp. 17–29, M. Cristina Vega, Francisco J. Fernández, Springer, 2024, ISSN: 0065-2598.

Abstract | Links | BibTeX | Tags: ERIANI, MARTIN, Unité ARN

Khodr Radi, Husser Claire, Ryckelynck Michael

Direct fluoride monitoring using a fluorogenic RNA-based biosensor Book Chapter

In: Stockbridge, Randy B. (Ed.): vol. 696, pp. 85–107, Randy B. Stockbridge, 2024, ISSN: 1557-7988.

Abstract | Links | BibTeX | Tags: RYCKELYNCK, Unité ARN

2023

Skerniskyte Jurate, Mulet Céline, André Antonin C, Anderson Mark C, Injarabian Louise, Buck Achim, Prade Verena M, Sansonetti Philippe J, Reibel-Foisset Sophie, Walch Axel K, Lebel Michel, Lykkesfeldt Jens, Marteyn Benoit S

Ascorbate deficiency increases progression of shigellosis in guinea pigs and mice infection models Journal Article

In: Gut Microbes, vol. 15, no. 2, pp. 2271597, 2023, ISSN: 1949-0984.

Abstract | Links | BibTeX | Tags: MARTEYN, Unité ARN

Kompatscher Maria, Bartosik Karolina, Erharter Kevin, Plangger Raphael, Juen Fabian Sebastian, Kreutz Christoph, Micura Ronald, Westhof Eric, Erlacher Matthias D

Contribution of tRNA sequence and modifications to the decoding preferences of E. coli and M. mycoides tRNAGlyUCC for synonymous glycine codons Journal Article

In: Nucleic Acids Res, 2023, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: Unité ARN, WESTHOF

Bahena-Ceron Roberto, Teixeira Chloe, Ponce Jose R Jaramillo, Wolff Philippe, Couzon Florence, François Pauline, Klaholz Bruno, Vandenesch François, Romby Pascale, Moreau Karen, Marzi Stefano

RlmQ: A Newly Discovered rRNA Modification Enzyme Bridging RNA Modification and Virulence Traits in Journal Article

In: RNA, vol. 30, no. 3, pp. 200-212, 2023, ISSN: 1469-9001.

Abstract | Links | BibTeX | Tags: ARN-MS, ROMBY, Unité ARN

Ponce José R Jaramillo, Frugier Magali

Plasmodium, the Apicomplexa Outlier When It Comes to Protein Synthesis Journal Article

In: Biomolecules, vol. 14, no. 1, pp. 46, 2023, ISSN: 2218-273X.

Abstract | Links | BibTeX | Tags: FRUGIER, Unité ARN

Lu Kunpeng, Pan Yifei, Shen Jianghong, Yang Lin, Zhan Chengyu, Liang Shubo, Tai Shuaishuai, Wan Linrong, Li Tian, Cheng Tingcai, Ma Bi, Pan Guoqing, He Ningjia, Lu Cheng, Westhof Eric, Xiang Zhonghuai, Han Min-Jin, Tong Xiaoling, Dai Fangyin

SilkMeta: a comprehensive platform for sharing and exploiting pan-genomic and multi-omic silkworm data Journal Article

In: Nucleic Acids Res, vol. 52, iss. D1, pp. D1024-D1032, 2023, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: Unité ARN, WESTHOF

Arrivé Mathilde, Bruggeman Mathieu, Skaltsogiannis Vasileios, Coudray Léna, Quan Yi-Fat, Schelcher Cédric, Cognat Valérie, Hammann Philippe, Chicher Johana, Wolff Philippe, Gobert Anthony, Giegé Philippe

A tRNA-modifying enzyme facilitates RNase P activity in Arabidopsis nuclei Journal Article

In: Nat Plants, vol. 9, iss. 12, pp. 2031-2041, 2023, ISSN: 2055-0278.

Abstract | Links | BibTeX | Tags: ARN-MS, PPSE, Unité ARN

Silva P Malaka De, Bennett Rebecca J, Kuhn Lauriane, Ngondo Patryk, Debande Lorine, Njamkepo Elisabeth, Ho Brian, Weill François-Xavier, Marteyn Benoît S, Jenkins Claire, Baker Kate S

Escherichia coli killing by epidemiologically successful sublineages of Shigella sonnei is mediated by colicins Journal Article

In: EBioMedicine, vol. 97, pp. 104822, 2023, ISSN: 2352-3964.

Abstract | Links | BibTeX | Tags: MARTEYN, PPSE, Unité ARN

Das Rhiju, Kretsch Rachael C, Simpkin Adam J, Mulvaney Thomas, Pham Phillip, Rangan Ramya, Bu Fan, Keegan Ronan M, Topf Maya, Rigden Daniel J, Miao Zhichao, Westhof Eric

Assessment of three-dimensional RNA structure prediction in CASP15 Journal Article

In: Proteins, vol. 91, iss. 12, pp. 1747-1770, 2023, ISSN: 1097-0134.

Abstract | Links | BibTeX | Tags: Unité ARN, WESTHOF

Labaronne E., Decimo D., Bertrand L., Guiguettaz L., Sohier T. J. M., Cluet D., Vivet-Boudou V., Dahoui C., François P., Hatin I., Lambotte O., Samri A., Autran B., Etienne L., Goujon C., Paillart J. -C., Namy O., Ramirez B. C., Ohlmann T., Morris A., Ricci E. P.

Extensive uORF translation from HIV-1 transcripts elicits specific T cell immune responses in infected individuals and conditions DDX3 dependency for expression of main ORFs Journal Article

In: (bioRxiv), 2023.

Links | BibTeX | Tags: PAILLART, Unité ARN

Zheng Wen-Qiang, Zhang Jian-Hui, Li Zi-Han, Liu Xiuxiu, Zhang Yong, Huang Shuo, Li Jinsong, Zhou Bin, Eriani Gilbert, Wang En-Duo, Zhou Xiao-Long

Mammalian mitochondrial translation infidelity leads to oxidative stress-induced cell cycle arrest and cardiomyopathy Journal Article

In: Proc Natl Acad Sci U S A, vol. 120, no. 37, pp. e2309714120, 2023, ISSN: 1091-6490.

Abstract | Links | BibTeX | Tags: ERIANI, Unité ARN

Dufossez Robin, Krafft Marie-Pierre, Ursuegui Sylvain, Mosser Michel, Mouftakhir Safae, Pernod Ketty, Chaubet Guilhem, Ryckelynck Michael, Wagner Alain

Microfluidic Droplet Stabilization via SPAAC Promoted Antibody Conjugation at the Water/Oil Interface Journal Article

In: ACS Appl Mater Interfaces, vol. 15, iss. 38, pp. 45498-45505, 2023, ISSN: 1944-8252.

Abstract | Links | BibTeX | Tags: RYCKELYNCK, Unité ARN

Tidu Antonin, Martin Franck

The interplay between cis- and trans-acting factors drives selective mRNA translation initiation in eukaryotes Journal Article

In: Biochimie, vol. 217, pp. 20-30, 2023, ISSN: 1638-6183.

Abstract | Links | BibTeX | Tags: MARTIN, Unité ARN

Saeb Sepideh, Wallet Clémentine, Rohr Olivier, Schwartz Christian, Loustau Thomas

Targeting and eradicating latent CNS reservoirs of HIV-1: Original strategies and new models Journal Article

In: Biochem Pharmacol, vol. 214, pp. 115679, 2023, ISSN: 1873-2968.

Abstract | Links | BibTeX | Tags: ROHR, Unité ARN

Wright Duncan E, Krol Alain

FEBS fellowships: supporting excellent science for over four decades Miscellaneous

2023, ISSN: 2211-5463.

Abstract | Links | BibTeX | Tags: KROL, Unité ARN

Pitolli Martina, Cela Marta, Paulus Caroline, Rudinger-Thirion Joëlle, Frugier Magali

RNA aptamers developed against tRip: A preliminary approach targeting tRNA entry in Plasmodium Journal Article

In: Biochimie, vol. 217, pp. 106-115, 2023, ISSN: 1638-6183.

Abstract | Links | BibTeX | Tags: FRUGIER, Unité ARN

Tardivat Yann, Sosnowski Piotr, Tidu Antonin, Westhof Eric, Eriani Gilbert, Martin Franck

SARS-CoV-2 NSP1 induces mRNA cleavages on the ribosome Journal Article

In: Nucleic Acids Res, vol. 51, iss. 16, pp. 8677-8690, 2023, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: ERIANI, MARTIN, Unité ARN

Gaucherand Lea, Iyer Amrita, Gilabert Isabel, Rycroft Chris H, Gaglia Marta M

Cut site preference allows influenza A virus PA-X to discriminate between host and viral mRNAs Journal Article

In: Nat Microbiol, 2023, ISSN: 2058-5276.

Abstract | Links | BibTeX | Tags: PFEFFER, Unité ARN

Pivard Mariane, Caldelari Isabelle, Brun Virginie, Croisier Delphine, Jaquinod Michel, Anzala Nelson, Gilquin Benoît, Teixeira Chloé, Benito Yvonne, Couzon Florence, Romby Pascale, Moreau Karen, Vandenesch François

Complex Regulation of Gamma-Hemolysin Expression Impacts Staphylococcus aureus Virulence Journal Article

In: Microbiol Spectr, pp. e0107323, 2023, ISSN: 2165-0497.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Jakob C., Lovate G. L., Desirò D., Gießler L., Smyth R. P., Marquet R., Lamkiewicz K., Marz M., Schwemmle M., Bolte H.

Sequential disruption of SPLASH-identified vRNA-vRNA interactions challenges their role in influenza A virus genome packaging Journal Article

In: Nucleic Acids Res, vol. 51, iss. 12, pp. 6479-6494, 2023, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: MARQUET, Unité ARN

Lavie Julie, Lalou Claude, Mahfouf Walid, Dupuy Jean-William, Lacaule Aurélie, Cywinska Agata Ars, Lacombe Didier, Duchêne Anne-Marie, Raymond Anne-Aurélie, Rezvani Hamid Reza, Ngondo Richard Patryk, Bénard Giovanni

The E3 ubiquitin ligase FBXL6 controls the quality of newly synthesized mitochondrial ribosomal proteins Journal Article

In: Cell Rep, vol. 42, no. 6, pp. 112579, 2023, ISSN: 2211-1247.

Abstract | Links | BibTeX | Tags: MARTEYN, Unité ARN

Vindry Caroline, Guillin Olivia, Wolff Philippe, Marie Paul, Mortreux Franck, Mangeot Philippe E, Ohlmann Théophile, Chavatte Laurent

A homozygous mutation in the human selenocysteine tRNA gene impairs UGA recoding activity and selenoproteome regulation by selenium Journal Article

In: Nucleic Acids Res, vol. 51, iss. 14, pp. 7580-7601, 2023, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: ARN-MS, Unité ARN

Lista M. J., Jousset A. -C., Cheng M., Saint-André V., Perrot E., Rodrigues M., Primo C. Di, Gadelle D., Toccafondi E., Segeral E., Berlioz-Torrent C., Emiliani S., Mergny J. -L., Lavigne M.

DNA topoisomerase 1 represses HIV-1 promoter activity through its interaction with a guanine quadruplex present in the LTR sequence Journal Article

In: Retrovirology, vol. 20, no. 1, pp. 10, 2023, ISSN: 1742-4690.

Abstract | Links | BibTeX | Tags: MARQUET, NEGRONI, PAILLART, Unité ARN

Husser Claire, Vuilleumier Stéphane, Ryckelynck Michael

FluorMango, an RNA-Based Fluorogenic Biosensor for the Direct and Specific Detection of Fluoride Journal Article

In: Small, vol. 19, iss. 13, pp. e2205232, 2023, ISSN: 1613-6829.

Abstract | Links | BibTeX | Tags: RYCKELYNCK, Unité ARN

Toccafondi Elenia, Kanja Marine, Winter Flore, Lener Daniela, Negroni Matteo

A snapshot on HIV-1 evolution through the identification of phylogenetic-specific properties of HIV-1 integrases M/O Journal Article

In: PLoS Pathog, vol. 19, no. 3, pp. e1011207, 2023, ISSN: 1553-7374.

Abstract | Links | BibTeX | Tags: NEGRONI, Unité ARN

Girardi Erika, Messmer Mélanie, Lopez Paula, Fender Aurélie, Chicher Johana, Chane-Woon-Ming Béatrice, Hammann Philippe, Pfeffer Sébastien

Proteomics-based determination of double-stranded RNA interactome reveals known and new factors involved in Sindbis virus infection Journal Article

In: RNA, vol. 29, no. 3, pp. 361–375, 2023, ISSN: 1469-9001.

Abstract | Links | BibTeX | Tags: PFEFFER, PPSE, Unité ARN

Dufossez Robin, Ursuegui Sylvain, Baudrey Stephanie, Pernod Ketty, Mouftakhir Safae, Oulad-Abdelghani Mustapha, Mosser Michel, Chaubet Guilhem, Ryckelynck Michael, Wagner Alain

Droplet Surface Immunoassay by Relocation (D-SIRe) for High-Throughput Analysis of Cytosolic Proteins at the Single-Cell Level Journal Article

In: Anal Chem, vol. 95, iss. 9, pp. 4470-4478, 2023, ISSN: 1520-6882.

Abstract | Links | BibTeX | Tags: RYCKELYNCK, Unité ARN

Lee Seungjae, Jee David, Srivastava Sid, Yang Acong, Ramidi Abhinav, Shang Renfu, Bortolamiol-Becet Diane, Pfeffer Sébastien, Gu Shuo, Wen Jiayu, Lai Eric C

Promiscuous splicing-derived hairpins are dominant substrates of tailing-mediated defense of miRNA biogenesis in mammals Journal Article

In: Cell Rep, vol. 42, no. 2, pp. 112111, 2023, ISSN: 2211-1247.

Abstract | Links | BibTeX | Tags: PFEFFER, Unité ARN

Giegé Richard, Eriani Gilbert

The tRNA identity landscape for aminoacylation and beyond Journal Article

In: Nucleic Acids Res, vol. 51, no. 4, pp. 1528–1570, 2023, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: ERIANI, GIEGE, Unité ARN

Husser Claire, Baudrey Stéphanie, Ryckelynck Michael

High-Throughput Development and Optimization of RNA-Based Fluorogenic Biosensors of Small Molecules Using Droplet-Based Microfluidics Book Chapter

In: Günter Mayer, Marcus M. Menger (Ed.): vol. 2570, pp. 243–269, Günter Mayer, Marcus M. Menger, 2023, ISSN: 1940-6029.

Abstract | Links | BibTeX | Tags: RYCKELYNCK, Unité ARN