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1997

Becker H D, Reinbolt J, Kreutzer R, Giege R, Kern D

Existence of two distinct aspartyl-tRNA synthetases in Thermus thermophilus. Structural and biochemical properties of the two enzymes Article de journal

Dans: Biochemistry, vol. 36, no. 29, p. 8785-8797, 1997, ISBN: 9220965, (0006-2960 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Sequence Aspartate-tRNA Ligase/chemistry/genetics/*isolation & purification Blotting, Amino Acyl/metabolism Sequence Alignment Thermus thermophilus/*enzymology/genetics, Transfer, Unité ARN, Western Catalysis Isoenzymes/chemistry/*isolation & purification Kinetics Molecular Sequence Data Molecular Weight RNA

Auffinger P, Westhof E

RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA(Asp) anticodon hairpin Article de journal

Dans: J Mol Biol, vol. 269, no. 3, p. 326-341, 1997, ISBN: 9199403, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Anticodon/*chemistry Base Composition *Computer Simulation Guanine/chemistry Hydrogen Bonding Models, Asp/*chemistry/metabolism Ribose/chemistry/metabolism Support, Molecular Nucleic Acid Conformation RNA, Non-U.S. Gov't Uridine/chemistry Water/*chemistry/metabolism, Transfer, Unité ARN

Auffinger P, Westhof E

Rules governing the orientation of the 2'-hydroxyl group in RNA Article de journal

Dans: J Mol Biol, vol. 274, no. 1, p. 54-63, 1997, ISBN: 9398515, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Asp/*chemistry/*metabolism Ribose/chemistry/metabolism Support, Carbohydrate Conformation Carbon/chemistry/metabolism Hydrogen Bonding Hydroxyl Radical/*chemistry/metabolism Proteins/genetics/metabolism RNA, Non-U.S. Gov't Water/metabolism, Transfer, Unité ARN

Aphasizhev R, Théobald-Dietrich A, Kostyuk D, Kochetkov S N, Kisselev L, Giege R, Fasiolo F

Structure and aminoacylation capacities of tRNA transcripts containing deoxyribonucleotides Article de journal

Dans: RNA, vol. 3, no. 8, p. 893-904, 1997, ISBN: 9257648, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Asp/chemistry/genetics/metabolism RNA, Base Sequence DNA-Directed RNA Polymerases/genetics/metabolism Deoxyribonucleotides/chemistry/*metabolism Models, Genetic, Met/chemistry/genetics/metabolism Structure-Activity Relationship Support, Molecular Molecular Sequence Data Mutation Nucleic Acid Conformation RNA, Non-U.S. Gov't *Transcription, Transfer, Transfer/*chemistry/genetics/*metabolism RNA, Unité ARN

Aphasizhev R, Senger B, Fasiolo F

Importance of structural features for tRNA(Met) identity Article de journal

Dans: RNA, vol. 3, no. 5, p. 489-497, 1997, ISBN: 9149230, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Anticodon Base Sequence Electrophoresis, Genetic Variation (Genetics), Met/*biosynthesis/*chemistry/isolation & purification Saccharomyces cerevisiae/genetics/metabolism Support, Non-U.S. Gov't Transcription, Polyacrylamide Gel Kinetics Magnesium Chloride Models, Structural Molecular Sequence Data *Nucleic Acid Conformation RNA, Transfer, Unité ARN

1996

Friant S., Heyman T., Wilhelm M. L., Wilhelm F. X.

Extended interactions between the primer tRNAi(Met) and genomic RNA of the yeast Ty1 retrotransposon Article de journal

Dans: Nucleic Acids Res, vol. 24, no. 3, p. 441-9, 1996, (0305-1048 Journal Article).

Résumé | BibTeX | Étiquettes: Acid, Base, cerevisiae, Conformation, Data, Gov't, Met/genetics/*metabolism, Molecular, Mutation, Non-U.S., Nucleic, Retroelements/*genetics, RNA, RNA/genetics/*metabolism, Saccharomyces, Sequence, structure, Support, Transfer

de Barros J. P. Pais, Keith G., Adlouni C. El, Glasser A. L., Mack G., Dirheimer G., Desgres J.

2'-O-methyl-5-formylcytidine (f5Cm), a new modified nucleotide at the 'wobble' of two cytoplasmic tRNAs Leu (NAA) from bovine liver Article de journal

Dans: Nucleic Acids Res, vol. 24, no. 8, p. 1489-96, 1996, (0305-1048 Journal Article).

Résumé | BibTeX | Étiquettes: &, Acid, Acyl/*chemistry/isolation, Amino, Animals, Base, Borohydrides/chemistry, Cattle, Cells, Conformation, Cytidine/*analogs, Cytoplasm, Data, derivatives/chemistry/isolation, Fragmentography, Gov't, Hela, Human, Liver/*chemistry, Mass, Molecular, Non-U.S., Nucleic, purification, RNA, Sequence, structure, Support, Transfer

Yusupova G, Reinbolt J, Wakao H, Laalami S, Grunberg-Manago M, Romby P, Ehresmann B, Ehresmann C

Topography of the Escherichia coli initiation factor 2/fMet-tRNA(f)(Met) complex as studied by cross-linking Article de journal

Dans: Biochemistry, vol. 35, no. 9, p. 2978-2984, 1996, ISBN: 8608135, (0006-2960 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Sequence Base Sequence Cisplatin/*pharmacology Cross-Linking Reagents Electrophoresis, Met/chemistry/isolation & purification/*metabolism Substrate Specificity Support, Non-U.S. Gov't, Polyacrylamide Gel Escherichia coli/drug effects/*metabolism Eukaryotic Initiation Factor-2/chemistry/isolation & purification/*metabolism Kinetics Molecular Sequence Data Nucleic Acid Conformation Peptide Fragments/chemistry/isolation & purification Protein Conformation RNA, ROMBY, Transfer, Unité ARN

Yusupova G, Lanchy J M, Yusupov M, Keith G, Grice S F Le, Ehresmann C, Ehresmann B, Marquet R

Primer selection by HIV-1 reverse transcriptase on RNA-tRNA(3Lys) and DNA-tRNA(3Lys) hybrids Article de journal

Dans: J Mol Biol, vol. 261, no. 3, p. 315-321, 1996, ISBN: 8780773, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence DNA, Lys/genetics/*metabolism RNA, MARQUET, Non-U.S. Gov't Support, P.H.S., Post-Transcriptional RNA, Transfer, U.S. Gov't, Unité ARN, Viral/genetics HIV-1/*enzymology/genetics HIV-1 Reverse Transcriptase Human Molecular Sequence Data *RNA Processing, Viral/genetics RNA-Directed DNA Polymerase/genetics/*metabolism Support

Skripkin E, Isel C, Marquet R, Ehresmann B, Ehresmann C

Psoralen crosslinking between human immunodeficiency virus type 1 RNA and primer tRNA3(Lys) Article de journal

Dans: Nucleic Acids Res, vol. 24, no. 3, p. 509-514, 1996, ISBN: 8602365, (0305-1048 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence Cross-Linking Reagents/*metabolism Ficusin/*metabolism HIV-1/*genetics Human Molecular Sequence Data Molecular Structure RNA, Lys/*genetics/metabolism RNA, MARQUET, Non-U.S. Gov't, Transfer, Unité ARN, Viral/*genetics/metabolism Support

Sissler M, Giege R, Florentz C

Arginine aminoacylation identity is context-dependent and ensured by alternate recognition sets in the anticodon loop of accepting tRNA transcripts Article de journal

Dans: EMBO J, vol. 15, no. 18, p. 5069-5076, 1996, ISBN: 8890180, (0261-4189 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: *Anticodon Arginine/*metabolism Base Sequence Kinetics Molecular Sequence Data Nucleic Acid Conformation RNA, Arg/*chemistry/metabolism RNA, Asp/chemistry/metabolism Saccharomyces cerevisiae Support, FLORENTZ, Fungal/*chemistry/metabolism RNA, Non-U.S. Gov't, SISSLER, Transfer, Unité ARN

Senger B, Fasiolo F

Yeast tRNA(Met) recognition by methionyl-tRNA synthetase requires determinants from the primary, secondary and tertiary structure: a review Article de journal

Dans: Biochimie, vol. 78, no. 7, p. 597-604, 1996, ISBN: 8955903, (0300-9084 Journal Article Review Review, Tutorial).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Sequence Anticodon Methionine-tRNA Ligase/*metabolism Molecular Sequence Data Nucleic Acid Conformation Protein Structure, Met/*metabolism Structure-Activity Relationship Support, Non-U.S. Gov't, Secondary Protein Structure, Tertiary RNA, Transfer, Unité ARN

Rudinger J, Hillenbrandt R, Sprinzl M, Giege R

Antideterminants present in minihelix(Sec) hinder its recognition by prokaryotic elongation factor Tu Article de journal

Dans: EMBO J, vol. 15, no. 3, p. 650-657, 1996, ISBN: 8599948, (0261-4189 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid-Specific/*chemistry/genetics/*metabolism RNA, Antisense/chemistry/genetics/metabolism RNA, Asp/chemistry/genetics/metabolism Saccharomyces cerevisiae/genetics/metabolism Support, Base Sequence Escherichia coli/genetics/metabolism Evolution Guanosine Triphosphate/metabolism Molecular Sequence Data Nucleic Acid Conformation Peptide Elongation Factor Tu/*metabolism RNA, Non-U.S. Gov't Thermus thermophilus/metabolism, Transfer, Unité ARN

de Barros J P Pais, Keith G, Adlouni C El, Glasser A L, Mack G, Dirheimer G, Desgres J

2'-O-methyl-5-formylcytidine (f5Cm), a new modified nucleotide at the 'wobble' of two cytoplasmic tRNAs Leu (NAA) from bovine liver Article de journal

Dans: Nucleic Acids Res, vol. 24, no. 8, p. 1489-1496, 1996, ISBN: 8628682, (0305-1048 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acyl/*chemistry/isolation & purification Support, Animals Base Sequence Borohydrides/chemistry Cattle Cytidine/*analogs & derivatives/chemistry/isolation & purification Cytoplasm Hela Cells Human Liver/*chemistry Mass Fragmentography Molecular Sequence Data Molecular Structure Nucleic Acid Conformation RNA, Non-U.S. Gov't, Transfer, Unité ARN

Mazauric M H, Reinbolt J, Lorber B, Ebel C, Keith G, Giege R, Kern D

An example of non-conservation of oligomeric structure in prokaryotic aminoacyl-tRNA synthetases. Biochemical and structural properties of glycyl-tRNA synthetase from Thermus thermophilus Article de journal

Dans: Eur J Biochem, vol. 241, no. 3, p. 814-826, 1996, ISBN: 8944770, (0014-2956 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Species Specificity Substrate Specificity Support, Amino Acid Sequence Comparative Study Enzyme Stability Eukaryotic Cells Glycine-tRNA Ligase/chemistry/*isolation & purification/metabolism Heat Kinetics Molecular Sequence Data Molecular Weight Prokaryotic Cells Protein Conformation RNA, Gly/metabolism Sequence Analysis Sequence Homology, Non-U.S. Gov't Thermodynamics Thermus thermophilus/*enzymology, Transfer, Unité ARN

Martin F, Reinbolt J, Dirheimer G, Gangloff J, Eriani G

Selection of tRNA(Asp) amber suppressor mutants having alanine, arginine, glutamine, and lysine identity Article de journal

Dans: RNA, vol. 2, no. 9, p. 919-927, 1996, ISBN: 8809018, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Alanine/genetics Arginine/genetics Base Sequence Escherichia coli/genetics Genes, Asp/*genetics *Selection (Genetics) Support, ERIANI, Genetic, Genetic Molecular Sequence Data *Mutation RNA, Non-U.S. Gov't *Suppression, Suppressor Glutamine/genetics Lysine/genetics Models, Transfer, Unité ARN

Rudinger J, Hillenbrandt R, Sprinzl M, Giege R

Antideterminants present in minihelix(Sec) hinder its recognition by prokaryotic elongation factor Tu Article de journal

Dans: EMBO J, vol. 15, no. 3, p. 650-657, 1996, ISBN: 8599948, (0261-4189 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid-Specific/*chemistry/genetics/*metabolism RNA, Antisense/chemistry/genetics/metabolism RNA, Asp/chemistry/genetics/metabolism Saccharomyces cerevisiae/genetics/metabolism Support, Base Sequence Escherichia coli/genetics/metabolism Evolution Guanosine Triphosphate/metabolism Molecular Sequence Data Nucleic Acid Conformation Peptide Elongation Factor Tu/*metabolism RNA, Non-U.S. Gov't Thermus thermophilus/metabolism, Transfer, Unité ARN

de Barros J P Pais, Keith G, Adlouni C El, Glasser A L, Mack G, Dirheimer G, Desgres J

2'-O-methyl-5-formylcytidine (f5Cm), a new modified nucleotide at the 'wobble' of two cytoplasmic tRNAs Leu (NAA) from bovine liver Article de journal

Dans: Nucleic Acids Res, vol. 24, no. 8, p. 1489-1496, 1996, ISBN: 8628682, (0305-1048 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acyl/*chemistry/isolation & purification Support, Animals Base Sequence Borohydrides/chemistry Cattle Cytidine/*analogs & derivatives/chemistry/isolation & purification Cytoplasm Hela Cells Human Liver/*chemistry Mass Fragmentography Molecular Sequence Data Molecular Structure Nucleic Acid Conformation RNA, Non-U.S. Gov't, Transfer, Unité ARN

Mazauric M H, Reinbolt J, Lorber B, Ebel C, Keith G, Giege R, Kern D

An example of non-conservation of oligomeric structure in prokaryotic aminoacyl-tRNA synthetases. Biochemical and structural properties of glycyl-tRNA synthetase from Thermus thermophilus Article de journal

Dans: Eur J Biochem, vol. 241, no. 3, p. 814-826, 1996, ISBN: 8944770, (0014-2956 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Species Specificity Substrate Specificity Support, Amino Acid Sequence Comparative Study Enzyme Stability Eukaryotic Cells Glycine-tRNA Ligase/chemistry/*isolation & purification/metabolism Heat Kinetics Molecular Sequence Data Molecular Weight Prokaryotic Cells Protein Conformation RNA, Gly/metabolism Sequence Analysis Sequence Homology, Non-U.S. Gov't Thermodynamics Thermus thermophilus/*enzymology, Transfer, Unité ARN

Martin F, Reinbolt J, Dirheimer G, Gangloff J, Eriani G

Selection of tRNA(Asp) amber suppressor mutants having alanine, arginine, glutamine, and lysine identity Article de journal

Dans: RNA, vol. 2, no. 9, p. 919-927, 1996, ISBN: 8809018, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Alanine/genetics Arginine/genetics Base Sequence Escherichia coli/genetics Genes, Asp/*genetics *Selection (Genetics) Support, ERIANI, Genetic, Genetic Molecular Sequence Data *Mutation RNA, Non-U.S. Gov't *Suppression, Suppressor Glutamine/genetics Lysine/genetics Models, Transfer, Unité ARN

Lanchy J M, Isel C, Ehresmann C, Marquet R, Ehresmann B

Structural and functional evidence that initiation and elongation of HIV-1 reverse transcription are distinct processes Article de journal

Dans: Biochimie, vol. 78, no. 11-12, p. 1087-1096, 1996, ISBN: 9150889, (0300-9084 Journal Article Review Review, Tutorial).

Résumé | Liens | BibTeX | Étiquettes: Amino Acyl/*biosynthesis/*chemistry RNA, Base Sequence Comparative Study HIV-1/*genetics/*metabolism HIV-1 Reverse Transcriptase/*metabolism Human Molecular Sequence Data *Nucleic Acid Conformation RNA, Genetic, MARQUET, Non-U.S. Gov't *Transcription, Transfer, Unité ARN, Viral/biosynthesis/chemistry Retroviridae/metabolism Support

Isel C, Lanchy J M, Grice S F Le, Ehresmann C, Ehresmann B, Marquet R

Specific initiation and switch to elongation of human immunodeficiency virus type 1 reverse transcription require the post-transcriptional modifications of primer tRNA3Lys Article de journal

Dans: EMBO J, vol. 15, no. 4, p. 917-924, 1996, ISBN: 8631312, (0261-4189 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Cell-Free System Gene Expression Regulation, Genetic *Virus Replication, Lys/*metabolism RNA, MARQUET, Non-U.S. Gov't Templates, Transfer, Unité ARN, Viral HIV-1/*genetics HIV-1 Reverse Transcriptase RNA, Viral/metabolism RNA-Directed DNA Polymerase/*metabolism Support

Isel C, Ehresmann C, Ehresmann B, Marquet R

Determining the conformation of RNAs in solution. Application to a retroviral system: structure of the HIV-1 primer binding site region and effect of tRNA(3Lys) binding Article de journal

Dans: Pharm Acta Helv, vol. 71, no. 1, p. 11-19, 1996, ISBN: 8786994, (0031-6865 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Sequence Binding Sites DNA Primers HIV-1/*chemistry Human Nucleic Acid Conformation RNA, Lys/*chemistry RNA, MARQUET, Non-U.S. Gov't, Transfer, Unité ARN, Viral/*chemistry Solutions Support

Hubert N, Walczak R, Sturchler C, Myslinski E, Schuster C, Westhof E, Carbon P, Krol A

RNAs mediating cotranslational insertion of selenocysteine in eukaryotic selenoproteins Article de journal

Dans: Biochimie, vol. 78, no. 7, p. 590-596, 1996, ISBN: 8955902, (0300-9084 Journal Article Review Review, Tutorial).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid-Specific/chemistry/metabolism Rats Schistosoma mansoni Selenocysteine/chemistry/*metabolism Support, Animals Base Sequence Cattle Escherichia coli Human Mice Models, Molecular Molecular Sequence Data Nucleic Acid Conformation Proteins/chemistry/*metabolism RNA/chemistry/*metabolism RNA, Non-U.S. Gov't Xenopus laevis, Transfer, Unité ARN

Holmes C E, Abraham A T, Hecht S M, Florentz C, Giege R

Fe.bleomycin as a probe of RNA conformation Article de journal

Dans: Nucleic Acids Res, vol. 24, no. 17, p. 3399-3406, 1996, ISBN: 8811095, (0305-1048 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Asp/chemistry RNA, Binding Sites Bleomycin/*analogs & derivatives/chemistry Models, FLORENTZ, Fungal/*chemistry RNA, Messenger/chemistry RNA, Molecular *Molecular Probes *Nucleic Acid Conformation RNA Precursors/chemistry RNA, Non-U.S. Gov't Support, P.H.S., Phe/chemistry Support, Transfer, Transfer/*chemistry RNA, U.S. Gov't, Unité ARN

Grosjean H, Edqvist J, Straby K B, Giege R

Enzymatic formation of modified nucleosides in tRNA: dependence on tRNA architecture Article de journal

Dans: J Mol Biol, vol. 255, no. 1, p. 67-85, 1996, ISBN: 8568876, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Animals Base Sequence Isomerases/metabolism Microinjections Molecular Sequence Data Mutation *Nucleic Acid Conformation Oocytes Pentosyltransferases/metabolism RNA Processing, Asp/*chemistry/metabolism Ribonucleosides/biosynthesis/*metabolism Support, Non-U.S. Gov't Xenopus laevis tRNA Methyltransferases/*metabolism, Post-Transcriptional/*physiology RNA, Transfer, Unité ARN

Gotte M, Marquet R, Isel C, Anderson V E, Keith G, Gross H J, Ehresmann C, Ehresmann B, Heumann H

Probing the higher order structure of RNA with peroxonitrous acid Article de journal

Dans: FEBS Lett, vol. 390, no. 2, p. 226-228, 1996, ISBN: 8706865, (0014-5793 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Animals Chelating Agents Edetic Acid Hydroxyl Radical/chemistry Molecular Probes Molecular Structure *Nitrates RNA, Fungal/chemistry RNA, Lys/chemistry RNA, MARQUET, Non-U.S. Gov't, Phe/chemistry Rabbits Saccharomyces cerevisiae/chemistry Support, Transfer, Transfer/*chemistry RNA, Unité ARN

Giege R, Florentz C, Kern D, Gangloff J, Eriani G, Moras D

Aspartate identity of transfer RNAs Article de journal

Dans: Biochimie, vol. 78, no. 7, p. 605-623, 1996, ISBN: 8955904, (0300-9084 Journal Article Review Review, Tutorial).

Résumé | Liens | BibTeX | Étiquettes: Asp/*chemistry Saccharomyces cerevisiae Structure-Activity Relationship Support, Aspartate-tRNA Ligase/chemistry/metabolism Aspartic Acid/analysis Base Sequence Escherichia coli Models, ERIANI, FLORENTZ, Molecular Molecular Sequence Data Nucleic Acid Conformation RNA, Non-U.S. Gov't Thermus thermophilus, Transfer, Unité ARN

Giege R

Interplay of tRNA-like structures from plant viral RNAs with partners of the translation and replication machineries Article de journal

Dans: Proc Natl Acad Sci U S A, vol. 93, no. 22, p. 12078-12081, 1996, ISBN: 8901535, (0027-8424 Comment Journal Article Review Review, Tutorial).

Liens | BibTeX | Étiquettes: Amino Acyl/*physiology RNA, Base Sequence Evolution, Genetic Molecular Sequence Data Peptide Elongation Factors/metabolism Plant Viruses/*genetics RNA, Genetic Virus Replication, Molecular Models, Transfer, Unité ARN, Viral/biosynthesis Translation

Friant S, Heyman T, Wilhelm M L, Wilhelm F X

Extended interactions between the primer tRNAi(Met) and genomic RNA of the yeast Ty1 retrotransposon Article de journal

Dans: Nucleic Acids Res, vol. 24, no. 3, p. 441-449, 1996, ISBN: 8602356, (0305-1048 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence Molecular Sequence Data Molecular Structure Mutation Nucleic Acid Conformation RNA/genetics/*metabolism RNA, Met/genetics/*metabolism Retroelements/*genetics Saccharomyces cerevisiae Support, Non-U.S. Gov't, Transfer, Unité ARN

Caprara M G, Lehnert V, Lambowitz A M, Westhof E

A tyrosyl-tRNA synthetase recognizes a conserved tRNA-like structural motif in the group I intron catalytic core Article de journal

Dans: Cell, vol. 87, no. 6, p. 1135-1145, 1996, ISBN: 8978617, (0092-8674 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence Binding Sites/genetics Conserved Sequence Evolution *Introns Molecular Sequence Data Neurospora crassa Nucleic Acid Conformation Protein Conformation Protein Structure, Fungal/chemistry/metabolism/physiology RNA, Non-U.S. Gov't Support, P.H.S. Tyrosine-tRNA Ligase/*chemistry/*genetics/metabolism, Tertiary RNA Splicing/physiology RNA, Transfer, Tyr/chemistry Support, U.S. Gov't, Unité ARN

Becker H D, Giege R, Kern D

Identity of prokaryotic and eukaryotic tRNA(Asp) for aminoacylation by aspartyl-tRNA synthetase from Thermus thermophilus Article de journal

Dans: Biochemistry, vol. 35, no. 23, p. 7447-7458, 1996, ISBN: 8652522, (0006-2960 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Substrate Specificity Support, Amino Acid Sequence Anticodon Aspartate-tRNA Ligase/chemistry/*metabolism Base Sequence Comparative Study Escherichia coli Kinetics Molecular Sequence Data Nucleic Acid Conformation RNA, Asp/biosynthesis/*metabolism RNA, Genetic, Non-U.S. Gov't Thermus thermophilus/*enzymology Transcription, Phe/biosynthesis/metabolism Recombinant Proteins/chemistry/metabolism Saccharomyces cerevisiae Sequence Homology, Transfer, Unité ARN

Auffinger P, Westhof E

H-bond stability in the tRNA(Asp) anticodon hairpin: 3 ns of multiple molecular dynamics simulations Article de journal

Dans: Biophys J, vol. 71, no. 2, p. 940-954, 1996, ISBN: 8842234, (0006-3495 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Anticodon/*chemistry Base Composition Base Sequence *Computer Simulation Drug Stability Hydrogen Bonding Kinetics Models, Asp/*chemistry Software Support, Molecular *Nucleic Acid Conformation RNA, Non-U.S. Gov't, Transfer, Unité ARN

Arts E J, Stetor S R, Li X, Rausch J W, Howard K J, Ehresmann B, North T W, Wohrl B M, Goody R S, Wainberg M A, Grice S F

Initiation of (-) strand DNA synthesis from tRNA(3Lys) on lentiviral RNAs: implications of specific HIV-1 RNA-tRNA(3Lys) interactions inhibiting primer utilization by retroviral reverse transcriptases Article de journal

Dans: Proc Natl Acad Sci U S A, vol. 93, no. 19, p. 10063-10068, 1996, ISBN: 8816751, (0027-8424 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acyl/chemistry/*metabolism RNA, Animals Base Sequence Cats DNA, Equine/genetics/*metabolism Kinetics Molecular Sequence Data Nucleic Acid Conformation RNA, Genetic, Non-U.S. Gov't Support, P.H.S. Templates, Transfer, U.S. Gov't, Unité ARN, Viral HIV-1/genetics/*metabolism Horses Human Infectious Anemia Virus, Viral/*biosynthesis Genome, Viral/chemistry/*metabolism RNA-Directed DNA Polymerase/*metabolism SIV/genetics/*metabolism Support

Arts E J, Ghosh M, Jacques P S, Ehresmann B, Grice S F Le

Restoration of tRNA3Lys-primed(-)-strand DNA synthesis to an HIV-1 reverse transcriptase mutant with extended tRNAs. Implications for retroviral replication Article de journal

Dans: J Biol Chem, vol. 271, no. 15, p. 9054-9061, 1996, ISBN: 8621554, (0021-9258 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence DNA, Calf Thymus/metabolism Sequence Deletion Structure-Activity Relationship Support, Complementary/biosynthesis DNA, Lys/*chemistry RNA-Directed DNA Polymerase/genetics/*metabolism Recombinant Proteins Ribonuclease H, Non-U.S. Gov't Support, P.H.S., Transfer, U.S. Gov't, Unité ARN, Viral/*biosynthesis HIV-1 Reverse Transcriptase Hydrogen Bonding Molecular Sequence Data Nucleic Acid Conformation RNA

Aphasizhev R, Senger B, Rengers J U, Sprinzl M, Walter P, Nussbaum G, Fasiolo F

Conservation in evolution for a small monomeric phenylalanyl-tRNA synthetase of the tRNA(Phe) recognition nucleotides and initial aminoacylation site Article de journal

Dans: Biochemistry, vol. 35, no. 1, p. 117-123, 1996, ISBN: 8555164, (0006-2960 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Non-U.S. Gov't Variation (Genetics), Nucleic Acid Substrate Specificity Support, Phe/*chemistry/*metabolism Saccharomyces cerevisiae/enzymology/genetics Sequence Homology, Transfer, Unité ARN

1995

Gabryszuk J., Keith G., Monko M., Kuligowska E., Dirheimer G., Szarkowski J. W., Przykorska A.

Structural specificity of nuclease from wheat chloroplasts stroma Article de journal

Dans: Nucleic Acids Symp Ser, no. 33, p. 115-9, 1995, (0261-3166 Journal Article).

Résumé | BibTeX | Étiquettes: &, Acid, Asp/chemistry/genetics/metabolism, Base, Binding, Chloroplasts/*enzymology, Conformation, Data, Endonucleases/isolation, Fungal/chemistry/genetics/metabolism, Gov't, Molecular, Non-U.S., Nucleic, Phe/chemistry/genetics/metabolism, purification/*metabolism, RNA, RNA/chemistry/metabolism, Sequence, Sites, Specificity, Substrate, Support, Transfer, Triticum/*enzymology

Gabryszuk J, Keith G, Monko M, Kuligowska E, Dirheimer G, Szarkowski J W, Przykorska A

Structural specificity of nuclease from wheat chloroplasts stroma Article de journal

Dans: Nucleic Acids Symp Ser, no. 33, p. 115-9, 1995, ISBN: 8643343, (0261-3166 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Asp/chemistry/genetics/metabolism RNA, Base Sequence Binding Sites Chloroplasts/*enzymology Endonucleases/isolation & purification/*metabolism Molecular Sequence Data Nucleic Acid Conformation RNA/chemistry/metabolism RNA, Fungal/chemistry/genetics/metabolism RNA, Non-U.S. Gov't Triticum/*enzymology, Phe/chemistry/genetics/metabolism Substrate Specificity Support, Transfer

Gabryszuk J, Keith G, Monko M, Kuligowska E, Dirheimer G, Szarkowski J W, Przykorska A

Structural specificity of nuclease from wheat chloroplasts stroma Article de journal

Dans: Nucleic Acids Symp Ser, no. 33, p. 115-9, 1995, ISBN: 8643343, (0261-3166 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Asp/chemistry/genetics/metabolism RNA, Base Sequence Binding Sites Chloroplasts/*enzymology Endonucleases/isolation & purification/*metabolism Molecular Sequence Data Nucleic Acid Conformation RNA/chemistry/metabolism RNA, Fungal/chemistry/genetics/metabolism RNA, Non-U.S. Gov't Triticum/*enzymology, Phe/chemistry/genetics/metabolism Substrate Specificity Support, Transfer

Vlassov V V, Zuber G, Felden B, Behr J P, Giege R

Cleavage of tRNA with imidazole and spermine imidazole constructs: a new approach for probing RNA structure Article de journal

Dans: Nucleic Acids Res, vol. 23, no. 16, p. 3161-3167, 1995, ISBN: 7667092, (0305-1048 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Asp/*chemistry/genetics/*metabolism RNA, Base Sequence Binding Sites Buffers Hydrolysis Imidazoles Molecular Probes Molecular Sequence Data Molecular Structure Nucleic Acid Conformation RNA, Fungal/chemistry/genetics/metabolism RNA, Non-U.S. Gov't Tobacco Mosaic Virus/genetics/metabolism, Transfer, Unité ARN, Viral/chemistry/genetics/metabolism Saccharomyces cerevisiae/genetics/metabolism Spermine Support

Sturchler-Pierrat C, Hubert N, Totsuka T, Mizutani T, Carbon P, Krol A

Selenocysteylation in eukaryotes necessitates the uniquely long aminoacyl acceptor stem of selenocysteine tRNA(Sec) Article de journal

Dans: J Biol Chem, vol. 270, no. 31, p. 18570-18574, 1995, ISBN: 7629188, (0021-9258 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Acylation Animals Base Composition Base Sequence Cattle Eukaryotic Cells Kinetics Molecular Sequence Data Mutagenesis, Amino Acid-Specific RNA, Amino Acyl/*biosynthesis/*genetics/metabolism Selenocysteine/*biosynthesis Sequence Deletion Serine-tRNA Ligase/*metabolism Structure-Activity Relationship Support, Genetic, Non-U.S. Gov't Transcription, Site-Directed Phylogeny *RNA, Transfer, Unité ARN

Senger B, Aphasizhev R, Walter P, Fasiolo F

The presence of a D-stem but not a T-stem is essential for triggering aminoacylation upon anticodon binding in yeast methionine tRNA Article de journal

Dans: J Mol Biol, vol. 249, no. 1, p. 45-58, 1995, ISBN: 7776375, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Acylation Animals Anticodon/metabolism Base Sequence Caenorhabditis elegans Cattle Molecular Sequence Data Molecular Structure Mutation RNA, Met/chemistry/genetics/*metabolism Saccharomyces cerevisiae/*metabolism Support, Non-U.S. Gov't, Transfer, Unité ARN

Schuster C, Myslinski E, Krol A, Carbon P

Staf, a novel zinc finger protein that activates the RNA polymerase III promoter of the selenocysteine tRNA gene Article de journal

Dans: EMBO J, vol. 14, no. 15, p. 3777-3787, 1995, ISBN: 7641696, (0261-4189 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Support, Amino Acid Sequence Animals Base Sequence Cloning, Amino Acid-Specific/*genetics Recombinant Fusion Proteins/metabolism Sequence Analysis, DNA Sequence Homology, Messenger RNA, Molecular DNA/metabolism DNA-Binding Proteins/biosynthesis/genetics/*metabolism Gene Expression Genes, Non-U.S. Gov't Trans-Activation (Genetics)/*physiology Trans-Activators/biosynthesis/genetics/*metabolism Xenopus laevis *Zinc Fingers, Reporter Human Molecular Sequence Data Oocytes Promoter Regions (Genetics)/*genetics RNA Polymerase III/*genetics RNA, Transfer, Unité ARN

Mely Y, de Rocquigny H, Sorinas-Jimeno M, Keith G, Roques B P, Marquet R, Gerard D

Binding of the HIV-1 nucleocapsid protein to the primer tRNA(3Lys), in vitro, is essentially not specific Article de journal

Dans: J Biol Chem, vol. 270, no. 4, p. 1650-1656, 1995, ISBN: 7829498, (0021-9258 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Sequence Capsid/*chemistry/*metabolism *Capsid Proteins Escherichia coli Gene Products, Amino Acyl/biosynthesis/chemistry/*metabolism Substrate Specificity Support, gag/*chemistry/*metabolism HIV-1/*metabolism Hydrogen-Ion Concentration Kinetics Magnesium Chloride/pharmacology Mathematics Models, Genetic Zinc Fingers, MARQUET, Non-U.S. Gov't Transcription, Theoretical Molecular Sequence Data Nucleic Acid Conformation Osmolar Concentration Protein Binding RNA, Transfer, Unité ARN

Martin F, Eriani G, Reinbolt J, Dirheimer G, Gangloff J

Genetic selection for active E.coli amber tRNA(Asn) exclusively led to glutamine inserting suppressors Article de journal

Dans: Nucleic Acids Res, vol. 23, no. 5, p. 779-784, 1995, ISBN: 7708493, (0305-1048 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Asn/*genetics Support, Base Sequence Escherichia coli/*genetics *Genes, ERIANI, Insertional RNA, Non-U.S. Gov't, Suppressor Glutamine/*genetics Molecular Sequence Data Mutagenesis, Transfer, Unité ARN

Kreutzer R, Kern D, Giege R, Rudinger J

Footprinting of tRNA(Phe) transcripts from Thermus thermophilus HB8 with the homologous phenylalanyl-tRNA synthetase reveals a novel mode of interaction Article de journal

Dans: Nucleic Acids Res, vol. 23, no. 22, p. 4598-4602, 1995, ISBN: 8524648, (0305-1048 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Composition Base Sequence Cloning, Genetic, Molecular Comparative Study Escherichia coli Kinetics Models, Phe/biosynthesis/chemistry/*metabolism Thermus thermophilus/*enzymology/*genetics *Transcription, Structural Molecular Sequence Data Nucleic Acid Conformation Phenylalanine-tRNA Ligase/*metabolism Protein Binding RNA, Transfer, Unité ARN

Isel C, Ehresmann C, Keith G, Ehresmann B, Marquet R

Initiation of reverse transcription of HIV-1: secondary structure of the HIV-1 RNA/tRNA(3Lys) (template/primer) Article de journal

Dans: J Mol Biol, vol. 247, no. 2, p. 236-250, 1995, ISBN: 7707372, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence Binding Sites Conserved Sequence HIV-1/*genetics Models, Genetic, Lys/*genetics/metabolism RNA, MARQUET, Molecular Molecular Probes Molecular Sequence Data *Nucleic Acid Conformation RNA, Non-U.S. Gov't *Transcription, Transfer, Unité ARN, Viral/*genetics/metabolism Structure-Activity Relationship Support

Gabryszuk J, Przykorska A, Monko M, Kuligowska E, Sturchler C, Krol A, Dirheimer G, Szarkowski J W, Keith G

Native bovine selenocysteine tRNA(Sec) secondary structure as probed by two plant single-strand-specific nucleases Article de journal

Dans: Gene, vol. 161, no. 2, p. 259-263, 1995, ISBN: 7665090, (0378-1119 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid-Specific/*chemistry/*genetics Support, Animals Anticodon/chemistry/genetics Base Sequence Cattle Comparative Study Endonucleases Liver/chemistry Molecular Sequence Data Molecular Structure *Nucleic Acid Conformation Plants/enzymology RNA, Non-U.S. Gov't Xenopus laevis, Transfer, Unité ARN

Gabryszuk J, Keith G, Monko M, Kuligowska E, Dirheimer G, Szarkowski J W, Przykorska A

Structural specificity of nuclease from wheat chloroplasts stroma Article de journal

Dans: Nucleic Acids Symp Ser, no. 33, p. 115-119, 1995, ISBN: 8643343, (0261-3166 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Asp/chemistry/genetics/metabolism RNA, Base Sequence Binding Sites Chloroplasts/*enzymology Endonucleases/isolation & purification/*metabolism Molecular Sequence Data Nucleic Acid Conformation RNA/chemistry/metabolism RNA, Fungal/chemistry/genetics/metabolism RNA, Non-U.S. Gov't Triticum/*enzymology, Phe/chemistry/genetics/metabolism Substrate Specificity Support, Transfer, Unité ARN

Eriani G, Cavarelli J, Martin F, Ador L, Rees B, Thierry J C, Gangloff J, Moras D

The class II aminoacyl-tRNA synthetases and their active site: evolutionary conservation of an ATP binding site Article de journal

Dans: J Mol Evol, vol. 40, no. 5, p. 499-508, 1995, ISBN: 7783225, (0022-2844 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Species Specificity Structure-Activity Relationship, Asp/metabolism Saccharomyces cerevisiae/enzymology Sequence Alignment Sequence Homology, ERIANI, Molecular Molecular Sequence Data Protein Binding Protein Conformation RNA, Transfer, Transfer/metabolism RNA, Unité ARN

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