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2013

Duval M, Korepanov A, Fuchsbauer O, Fechter P, Haller A, Fabbretti A, Choulier L, Micura R, Klaholz B P, Romby P, Springer M, Marzi S

Escherichia coli Ribosomal Protein S1 Unfolds Structured mRNAs Onto the Ribosome for Active Translation Initiation. Article de journal

Dans: PLoS Biol, vol. 11, no. 12, p. e1001731, 2013, ISBN: 24339747.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Duval M, Romilly C, Helfer A C, Fuchsbauer O, Romby P, Marzi S

Footprinting methods for mapping RNA-protein and RNA-RNA interactions. Recueil

Dans: Klostermeier, D; Hammann, C (Ed.): RNA Structure and Folding, p. 29-50, Verlag Walter de Gruyter, Berlin, 2013, ISBN: 9783110284959/ISSN.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Simonetti A, Marzi S, Billas I M, Tsai A, Fabbretti A, Myasnikov A G, Roblin P, Vaiana A C, Hazemann I, Eiler D, Steitz T A, Puglisi J D, Gualerzi C O, Klaholz B P

Involvement of protein IF2 N domain in ribosomal subunit joining revealed from architecture and function of the full-length initiation factor. Article de journal

Dans: Proc Natl Acad Sci U S A, vol. 110, no. 39, p. 15656-61, 2013, ISBN: 24029017.

Résumé | Liens | BibTeX | Étiquettes: ERIANI, integrated structural biology protein synthesis, ROMBY, Unité ARN

Simonetti A, Marzi S, Fabbretti A, Hazemann I, Jenner L, Urzhumtsev A, Gualerzi C O, Klaholz B P

Structure of the protein core of translation initiation factor 2 in apo, GTP-bound and GDP-bound forms. Article de journal

Dans: Acta Crystallogr D Biol Crystallogr, vol. 69, no. Pt 6, p. 925-33, 2013, ISBN: 23695237.

Résumé | Liens | BibTeX | Étiquettes: ERIANI, ROMBY, Unité ARN

2012

Song J, Lays C, Vandenesch F, Benito Y, Bes M, Chu Y, Lina G, Romby P, Geissmann T, Boisset S

The Expression of Small Regulatory RNAs in Clinical Samples Reflects the Different Life Styles of Staphylococcus aureus in Colonization vs. Infection. Article de journal

Dans: PLoS One, vol. 7, no. 5, p. e37294, 2012, ISBN: 22629378.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Romilly C, Chevalier C, Marzi S, Masquida B, Geissmann T, Vandenesch F, Westhof E, Romby P

Loop-loop interactions involved in antisense regulation are processed by the endoribonuclease III in Staphylococcus aureus. Article de journal

Dans: RNA Biol, vol. 9, no. 12, p. 1461-1472, 2012, ISBN: 23134978.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN, WESTHOF

Romilly C, Caldelari I, Parmentier D, Lioliou E, Romby P, Fechter P

Current knowledge on regulatory RNAs and their machineries in Staphylococcus aureus Article de journal

Dans: RNA Biol, vol. 9, no. 4, p. 402-413, 2012, ISBN: 22546940.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Staphylococcus aureus Gene regulation Peptides Regulatory RNAs RNA-binding proteins Virulence, Unité ARN

Marzi S, Romby P

RNA mimicry, a decoy for regulatory proteins. Article de journal

Dans: Mol Microbiol, vol. 83, no. 1, p. 1-6, 2012, ISBN: 22098101, (Article first published online: 21 NOV 2011).

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Lioliou E, Sharma C M, Caldelari I, Helfer A C, Fechter P, Vandenesch F, Vogel J, Romby P

Global Regulatory Functions of the Staphylococcus aureus Endoribonuclease III in Gene Expression. Article de journal

Dans: PLoS Genet, vol. 8, no. 6, p. e1002782, 2012, ISBN: 22761586.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Lioliou E, Romilly C, Geissman T, Vandenesch F, Romby P

RNA-mediated regulation of virulence gene expression: another layer of complexity Chapitre d'ouvrage

Dans: Filloux, A (Ed.): Bacterial Regulatory Networks, p. 143-166, Caister Academic Press, Norwich, UK, 2012.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Jester B C, Romby P, Lioliou E

When ribonucleases come into play in pathogens: a survey of gram-positive bacteria. Article de journal

Dans: Int J Microbiol, vol. 2012, p. 592196, 2012, ISSN: ISSN: 1687-918X (Print) ISSN: 1687-9198 (Online), (Epub 2012 Mar 13.).

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Caldelari I, Fechter P, Lioliou E, Chevalier C, Gaspin C, Romby P

A current overview of regulatory RNAs in Staphylococcus aureus Chapitre d'ouvrage

Dans: Marchfelder, A; Hess, W R (Ed.): Regulatory RNAs in prokaryotes, p. 51-75, SpringerWienNewYork, 2012.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Helfer A C, Romilly C, Chevalier C, Lioliou E, Marzi S, Romby P

Probing RNA Structure In Vitro with Enzymes and Chemicals. Recueil

Dans: Hartmann, R K; Bindereif, A; Schön, A; Westhof, E (Ed.): Handbook of RNA Biochemistry: Second, Completely Revised and Enlarged Edition, p. 205-230, Wiley-VCH, 2012, ISBN: 9783527327645 9783527647064/ISSN.

Résumé | Liens | BibTeX | Étiquettes: RNA structure probing in vitro in vivo chemical probes enzymatic probing ribonucleases RNases T1, ROMBY, T2, Unité ARN, V1 lead(II)-induced cleavages dimethylsulfate (DMS) diethylpyrocarbonate (DEPC) 1-cyclohexyl-3-(2-morpholinoethyl)carbodiimide metho-p-toluenesulfonate (CMCT) N-ethyl-N-nitrosourea (ENU) N-methylisatoic anhydride (NMIA) 1-methyl-7-nitroisatoic anhydride (1M7) benzoyl cyanide (BzCN)

2011

Simonetti A, Marzi S, Myasnikov A, Menetret J F, Klaholz B P

Insights into translation initiation and termination complexes and into the polysome architecture Chapitre d'ouvrage

Dans: Rodnina, M; Wintermeyer, W; Green, R (Ed.): Ribosomes Structures, Function, and Dynamics, p. 113-128, Springer, Wien, 2011.

Résumé | Liens | BibTeX | Étiquettes: ENNIFAR, ROMBY, Unité ARN

2010

Giuliodori A M, Pietro F Di, Marzi S, Masquida B, Wagner R, Romby P, Gualerzi C O, Pon C L

The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA Article de journal

Dans: Mol Cell, vol. 37, no. 1, p. 21-33, 2010, ISBN: 20129052, (1097-4164 (Electronic) 1097-2765 (Linking) Journal Article Research Support, Non-U.S. Gov't).

Résumé | Liens | BibTeX | Étiquettes: 5' Untranslated Regions Acclimatization *Cold Temperature Escherichia coli/*genetics/metabolism Escherichia coli Proteins/genetics/*physiology Gene Expression Regulation, Bacterial Heat-Shock Proteins/genetics/*physiology Models, Genetic Nucleic Acid Conformation *Protein Biosynthesis RNA, Messenger/chemistry/*physiology, ROMBY, Unité ARN, WESTHOF

2009

Simonetti A, Marzi S, Jenner L, Myasnikov A, Romby P, Yusupova G, Klaholz B P, Yusupov M

A structural view of translation initiation in bacteria Article de journal

Dans: Cell Mol Life Sci, vol. 66, no. 3, p. 423-436, 2009, ISBN: 19011758, (1420-9071 (Electronic) Journal Article Research Support, Non-U.S. Gov't).

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Romby P, Marzi S, Westhof E

[The atomic structure of the ribosome into the spotlight] Article de journal

Dans: Med Sci (Paris), vol. 25, no. 11, p. 977-981, 2009, ISBN: 19951677, (0767-0974 (Print) 0767-0974 (Linking) Journal Article).

Liens | BibTeX | Étiquettes: ROMBY, Unité ARN, WESTHOF

Romby P, Charpentier E

An overview of RNAs with regulatory functions in gram-positive bacteria Article de journal

Dans: Cell Mol Life Sci, vol. 67, no. 2, p. 217-237, 2009, ISBN: 19859665, (1420-9071 (Electronic) 1420-682X (Linking) Journal Article Research Support, Non-U.S. Gov't Review).

Résumé | Liens | BibTeX | Étiquettes: Bacterial Gram-Positive Bacteria/*genetics/pathogenicity RNA, Bacterial/genetics/*metabolism RNA, Gene Expression Regulation, ROMBY, Unité ARN, Untranslated/genetics/*metabolism Virulence/genetics

Moreno R, Marzi S, Romby P, Rojo F

The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation Article de journal

Dans: Nucleic Acids Res, vol. 37, no. 22, p. 7678-7690, 2009, ISBN: 19825982, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article Research Support, Non-U.S. Gov't).

Résumé | Liens | BibTeX | Étiquettes: 5' Untranslated Regions Bacterial Proteins/genetics/*metabolism Binding Sites Nucleic Acid Conformation *Peptide Chain Initiation, Messenger/chemistry/metabolism Repressor Proteins/*metabolism Trans-Activators/*genetics, ROMBY, Translational Pseudomonas putida/*genetics RNA, Unité ARN

Geissmann T, Marzi S, Romby P

The role of mRNA structure in translational control in bacteria Article de journal

Dans: RNA Biol, vol. 6, no. 2, p. 153-160, 2009, ISBN: 19885993, (1555-8584 (Electronic) 1547-6286 (Linking) Journal Article Research Support, Non-U.S. Gov't Review).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid, Amino Acid Sequence Bacteria/*genetics Bacterial Proteins/chemistry/genetics Molecular Sequence Data *Nucleic Acid Conformation *Protein Biosynthesis RNA, Messenger/*chemistry Sequence Homology, ROMBY, Unité ARN

Geissmann T, Chevalier C, Cros M J, Boisset S, Fechter P, Noirot C, Schrenzel J, Francois P, Vandenesch F, Gaspin C, Romby P

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation Article de journal

Dans: Nucleic Acids Res, vol. 37, no. 21, p. 7239-7257, 2009, ISBN: 19786493, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article Research Support, Non-U.S. Gov't).

Résumé | Liens | BibTeX | Étiquettes: Bacillus subtilis/genetics/metabolism Base Sequence Computational Biology Conserved Sequence Gene Expression Profiling *Gene Expression Regulation, Bacterial Molecular Sequence Data Proteomics RNA Stability RNA, Genetic, Messenger/metabolism RNA, ROMBY, Unité ARN, Untranslated/*chemistry/genetics/metabolism Staphylococcus aureus/*genetics Transcription

Fechter P, Chevalier C, Yusupova G, Yusupov M, Romby P, Marzi S

Ribosomal initiation complexes probed by toeprinting and effect of trans-acting translational regulators in bacteria Chapitre d'ouvrage

Dans: Serganov, A (Ed.): Riboswitches: Methods and Protocols, vol. 540, p. 247-263, Springer Protocols, Humana Press, 2009, ISBN: 19381565.

Résumé | Liens | BibTeX | Étiquettes: Bacteria/*genetics/*metabolism Bacterial Proteins/*metabolism Base Sequence Escherichia coli/metabolism Molecular Biology/*methods Molecular Sequence Data *Peptide Chain Initiation, Bacterial/chemistry/genetics Ribosomes/*metabolism Staphylococcus aureus/metabolism Thermus thermophilus/metabolism, ROMBY, Translational RNA, Unité ARN

Chevalier C, Geissmann T, Helfer A C, Romby P

Probing mRNA structure and sRNA-mRNA interactions in bacteria using enzymes and lead(II) Chapitre d'ouvrage

Dans: Serganov, A (Ed.): Riboswitches: Methods and Protocols, vol. 540, p. 215-232, Springer Protocols, Humana Press, 2009, ISBN: 19381563.

Résumé | Liens | BibTeX | Étiquettes: Bacterial/chemical synthesis RNA, Base Sequence Chemical Fractionation Enzymes/*metabolism Hydrolysis/drug effects Lead/*pharmacology Molecular Biology/*methods Molecular Sequence Data Nucleic Acid Conformation/drug effects RNA/metabolism RNA, Messenger/*chemistry/genetics/*metabolism RNA, ROMBY, Unité ARN, Untranslated/chemistry/genetics/*metabolism Staphylococcus aureus/drug effects/*metabolism

Benelli D, Marzi S, Mancone C, Alonzi T, la Teana A, Londei P

Function and ribosomal localization of aIF6, a translational regulator shared by archaea and eukarya Article de journal

Dans: Nucleic Acids Res, vol. 37, no. 1, p. 256-267, 2009, ISBN: 19036786, (1362-4962 (Electronic) Journal Article Research Support, Non-U.S. Gov't).

Résumé | Liens | BibTeX | Étiquettes: 23S/chemistry/metabolism Ribosomal Proteins/metabolism Ribosome Subunits, Archaeal Proteins/analysis/chemistry/*metabolism Base Sequence Binding Sites Cell Cycle Cloning, Archaeal/*metabolism Ribosomes/metabolism Sulfolobus solfataricus/*genetics/metabolism, Large, Molecular Eukaryotic Initiation Factors/chemistry Models, Molecular Molecular Sequence Data Prokaryotic Initiation Factors/analysis/chemistry/*metabolism *Protein Biosynthesis RNA, Ribosomal, ROMBY, Unité ARN

Myasnikov A G, Simonetti A, Marzi S, Klaholz B P

Structure-function insights into prokaryotic and eukaryotic translation initiation Article de journal

Dans: Curr Opin Struct Biol, vol. 19, no. 3, p. 300-9, 2009, ISBN: 19493673, (1879-033X (Electronic) 0959-440X (Linking) Journal Article Research Support, Non-U.S. Gov't Review).

Résumé | Liens | BibTeX | Étiquettes: Amino Acid Sequence Eukaryotic Cells/*chemistry/*metabolism Humans Molecular Sequence Data *Peptide Chain Initiation, mino Acid Sequence Eukaryotic Cells/*chemistry/*metabolism Humans Molecular Sequence Data *Peptide Chain Initiation, ROMBY, Transfer/chemistry/metabolism Ribosomes/chemistry/genetics/metabolism, Translational Peptide Initiation Factors/chemistry/metabolism Prokaryotic Cells/*chemistry/*metabolism RNA, Unité ARN

Leclerc V, Caldelari I, Veresceaghina N, Reichhart J-M

Phagocytosis in Drosophila melanogaster Immune Response. Recueil

Dans: Phagocyte-pathogen Interactions, vol. 33, p. 513–521, DG Russel and S. Gordon, Whasington, DC, 2009.

BibTeX | Étiquettes: M3i, reichhart, ROMBY, Unité ARN

2008

Chamy L El, Leclerc V, Caldelari I, Reichhart J-M

Sensing of 'danger signals' and pathogen-associated molecular patterns defines binary signaling pathways 'upstream' of Toll Article de journal

Dans: Nat. Immunol., vol. 9, no. 10, p. 1165–1170, 2008, ISSN: 1529-2916.

Résumé | Liens | BibTeX | Étiquettes: Animals, Fungi, Genetically Modified, Gram-Positive Bacteria, Gram-Positive Bacterial Infections, In Situ Hybridization, M3i, Mycoses, Pattern Recognition, Peptide Hydrolases, Receptors, reichhart, ROMBY, Serine Endopeptidases, Signal Transduction, Toll-Like Receptors, Unité ARN

Romby P, Wagner E G

Exploring the complex world of RNA regulation Article de journal

Dans: Biol Cell, vol. 100, no. 1, p. e1-3, 2008, ISBN: 18072939, (1768-322X (Electronic) Editorial).

Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Marzi S, Fechter P, Chevalier C, Romby P, Geissmann T

RNA switches regulate initiation of translation in bacteria Article de journal

Dans: Biol Chem, vol. 389, no. 5, p. 585-598, 2008, ISBN: 18953726, (1431-6730 (Print) Journal Article Research Support, Non-U.S. Gov't Review).

Résumé | Liens | BibTeX | Étiquettes: Animals Bacteria/*genetics Genes, Bacterial/genetics/*immunology RNA, Messenger/biosynthesis/genetics Ribosomes/immunology, ROMBY, Switch/genetics/*immunology Humans Peptide Chain Initiation, Translational/genetics/*immunology Protein Biosynthesis/genetics/*immunology RNA, Unité ARN

Fechter P, Romby P

Footprinting Chapitre d'ouvrage

Dans: Muller, S (Ed.): Nucleic Acids from A to Z: a concise encyclopedia, p. 109, WILEY-VCH Verlag GmbH & Co, 2008.

Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Fechter P, Romby P

Chemical and enzymatic structure mapping of RNAs Chapitre d'ouvrage

Dans: Muller, S (Ed.): Nucleic Acids from A to Z: a concise encyclopedia, p. 41-43, WILEY-VCH Verlag GmbH & Co, 2008.

Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Chevalier C, Huntzinger E, Fechter P, Boisset S, Vandenesch F, Romby P, Geissmann T

Staphylococcus aureus endoribonuclease III purification and properties Article de journal

Dans: Methods Enzymol, vol. 447, p. 309-327, 2008, ISBN: 19161850, (1557-7988 (Electronic) Journal Article Research Support, Non-U.S. Gov't).

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Simonetti A, Marzi S, Myasnikov A G, Fabbretti A, Yusupov M, Gualerzi C O, Klaholz B P

Structure of the 30S translation initiation complex Article de journal

Dans: Nature, vol. 455, no. 7211, p. 416-420, 2008, ISBN: 18758445, (1476-4687 (Electronic) Journal Article Research Support, Non-U.S. Gov't).

Résumé | Liens | BibTeX | Étiquettes: Cryoelectron Microscopy Crystallography, Messenger/chemistry/genetics/metabolism RNA, Met/chemistry/genetics/metabolism/ultrastructure Ribosome Subunits/chemistry/metabolism/ultrastructure Ribosomes/chemistry/*metabolism/*ultrastructure Thermus thermophilus/*enzymology/genetics/*ultrastructure, Molecular Multiprotein Complexes/*chemistry/genetics/metabolism/*ultrastructure *Peptide Chain Initiation, ROMBY, Transfer, Translational Prokaryotic Initiation Factor-1/chemistry/genetics/metabolism/ultrastructure Prokaryotic Initiation Factor-2/chemistry/genetics/metabolism/ultrastructure Protein Conformation RNA, Unité ARN, X-Ray Guanosine Triphosphate/chemistry/metabolism Models

Simonetti A, Marzi S, Myasnikov A, Fabbretti A, Yusupov M, Gualerzi C, Klaholz B

Purification of T. thermophilus translation initiation factors and characterization of the corresponding ribosome complexes by filter-binding assays Divers

2008.

Liens | BibTeX | Étiquettes: filter-binding assay, IF1, IF2, initiation factor purification, Ribosome, ROMBY, Thermus thermophilus, translation initiation, Unité ARN

2007

Mandin P., Repoila F., Vergassola M., Geissmann T., Cossart P.

Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets Article de journal

Dans: Nucleic Acids Res, vol. 35, no. 3, p. 962-74, 2007, (1362-4962 (Electronic) Journal Article Research Support, Non-U.S. Gov't).

Résumé | BibTeX | Étiquettes: 5', Assay, Bacterial, Base, Biology, Computational, Data, DNA, Electrophoretic, Flanking, Genes, Genomics, Intergenic/chemistry, Listeria, Messenger/chemistry/*metabolism, Mobility, Molecular, monocytogenes/*genetics/metabolism, Region, RNA, ROMBY, Sequence, Shift, Untranslated/analysis/*genetics/metabolism

Marzi S, Romby P, Klaholz B P

[Twisting of mRNA reversibly blocks its translation by the ribosome] Article de journal

Dans: Med Sci (Paris), vol. 23, no. 10, p. 881-3, 2007, ISBN: 17937901, (0767-0974 (Print) News).

Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Marzi S, Myasnikov A G, Serganov A, Ehresmann C, Romby P, Yusupov M, Klaholz B P

Structured mRNAs regulate translation initiation by binding to the platform of the ribosome Article de journal

Dans: Cell, vol. 130, no. 6, p. 1019-31, 2007, ISBN: 17889647, (0092-8674 (Print) Comparative Study Journal Article Research Support, Non-U.S. Gov't).

Résumé | Liens | BibTeX | Étiquettes: 5' Untranslated Regions Amino Acid Sequence Base Sequence Binding Sites Cryoelectron Microscopy Escherichia coli/*genetics/metabolism Escherichia coli Proteins/chemistry/genetics/*metabolism *Gene Expression Regulation, Amino Acid Sequence Homology, Bacterial Models, Bacterial/chemistry/*metabolism RNA, Messenger/*metabolism RNA, Molecular Molecular Sequence Data Mutation Nucleic Acid Conformation *Peptide Chain Initiation, Nucleic Acid Structural Homology, Protein Time Factors, Ribonucleic Acid Ribosomal Proteins/chemistry/genetics/*metabolism Ribosomes/chemistry/*metabolism/ultrastructure Sequence Homology, ROMBY, Transfer/metabolism Regulatory Sequences, Translational Protein Binding Protein Conformation RNA, Unité ARN

Maone E, Stefano M Di, Berardi A, Benelli D, Marzi S, Teana A La, Londei P

Functional analysis of the translation factor aIF2/5B in the thermophilic archaeon Sulfolobus solfataricus Article de journal

Dans: Mol Microbiol, vol. 65, no. 3, p. 700-13, 2007, ISBN: 17608795, (0950-382X (Print) 0950-382X (Linking) Journal Article Research Support, Non-U.S. Gov't).

Résumé | Liens | BibTeX | Étiquettes: Archaeal Hydrolysis Peptide Chain Initiation, Met/metabolism Recombinant Fusion Proteins/metabolism Ribosomes/metabolism Sulfolobus solfataricus/genetics/*metabolism, Molecular Conserved Sequence GTP Phosphohydrolases/metabolism Gene Expression Genes, ROMBY, Secondary RNA, Transfer, Translational Peptide Initiation Factors/chemistry/isolation & purification/*metabolism Protein Binding *Protein Biosynthesis Protein Structure, Unité ARN

2006

Romby P, Vandenesch F, Wagner E G

The role of RNAs in the regulation of virulence-gene expression Article de journal

Dans: Curr Opin Microbiol, vol. 9, no. 2, p. 229-236, 2006, ISBN: 16529986, (1369-5274 (Print) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Geissmann T, Possedko M, Huntzinger E, Fechter P, Ehresmann C, Romby P

Regulatory RNAs as mediators of virulence gene expression in bacteria Chapitre d'ouvrage

Dans: Hofmann, F B (Ed.): Handbook of Experimental Pharmacology, vol. 173, p. 9-43, Springer, 2006, ISBN: 16594609.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

2005

Myasnikov A G, Marzi S, Simonetti A, Giuliodori A M, Gualerzi C O, Yusupova G, Yusupov M, Klaholz B P

Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome Article de journal

Dans: Nat Struct Mol Biol, vol. 12, no. 12, p. 1145-1149, 2005, ISBN: 16284619, (1545-9993 Journal article).

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Huntzinger E, Winter F, Moine H, Ehresmann C, Romby P

Probing RNA structures with enzymes and chemicals in vitro and in vivo Chapitre d'ouvrage

Dans: Hartmann, R K; Bindereif, A; Schon, A; Westhof, E (Ed.): Handbook of RNA biochemistry, vol. 1, p. 151-171, Wiley-Vch Verlag, 2005.

Liens | BibTeX | Étiquettes: ROMBY, ROMBY thiouridine 6-thioguanosine structures relationships variants, Unité ARN

Huntzinger E, Boisset S, Saveanu C, Benito Y, Geissmann T, Namane A, Lina G, Etienne J, Ehresmann B, Ehresmann C, Jacquier A, Vandenesch F, Romby P

Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression Article de journal

Dans: EMBO J, vol. 24, no. 4, p. 824-835, 2005, ISBN: 15678100, (0261-4189 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

Jenner L, Romby P, Rees B, Schulze-Briese C, Springer M, Ehresmann C, Ehresmann B, Moras D, Yusupova G, Yusupov M

Translational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding Article de journal

Dans: Science, vol. 308, no. 5718, p. 120-123, 2005, ISBN: 15802605, (1095-9203 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/chemistry/metabolism RNA, Bacterial/*chemistry/metabolism RNA, Messenger/*chemistry/metabolism RNA, Met/chemistry/metabolism *Regulatory Sequences, Molecular Nucleic Acid Conformation *Protein Biosynthesis RNA, Non-U.S. Gov't Ribosomal Proteins/metabolism Ribosomes/*metabolism Thermus thermophilus/genetics/*metabolism Threonine-tRNA Ligase/genetics/metabolism, Ribonucleic Acid Repressor Proteins/*metabolism Research Support, Ribosomal, ROMBY, ROMBY Bacterial Proteins/metabolism Base Pairing Binding Sites Crystallization Crystallography, Transfer, Unité ARN, X-Ray Fourier Analysis Models

Dock-Bregeon A C, Romby P, Springer M

Threonyl-tRNA synthetase: a multifunctional enzyme in E.coli. Chapitre d'ouvrage

Dans: Ibba, M; Francklyn, C; Cusack, S (Ed.): The aminoacyl-tRNA synthetases, p. 163-176, Landes Bioscience, 2005.

Résumé | Liens | BibTeX | Étiquettes: ROMBY, Unité ARN

2003

Romby P, Springer M

Bacterial translational control at atomic resolution Article de journal

Dans: Trends Genet, vol. 19, no. 3, p. 155-161, 2003, ISBN: 12615010, (0168-9525 Journal Article Review Review, Tutorial).

Résumé | Liens | BibTeX | Étiquettes: Bacterial *Gene Expression Regulation, Bacterial Models, Base Sequence Conserved Sequence Escherichia coli/*enzymology/*genetics *Gene Expression Regulation, Biological Models, Enzymologic Genes, Genetic, Messenger/genetics/*metabolism RNA, Molecular Molecular Mimicry Nucleic Acid Conformation Operator Regions (Genetics) RNA, Non-U.S. Gov't Threonine-tRNA Ligase/chemistry/*genetics/metabolism *Translation, ROMBY, Thr/*metabolism RNA-Binding Proteins/metabolism Support, Transfer, Unité ARN

Caillet J, Nogueira T, Masquida B, Winter F, Graffe M, Dock-Bregeon A C, Torres-Larios A, Sankaranarayanan R, Westhof E, Ehresmann B, Ehresmann C, Romby P, Springer M

The modular structure of Escherichia coli threonyl-tRNA synthetase as both an enzyme and a regulator of gene expression Article de journal

Dans: Mol Microbiol, vol. 47, no. 4, p. 961-974, 2003, ISBN: 12581352, (0950-382x Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Amino Acyl/chemistry/metabolism Ribosomes/metabolism Support, Bacterial Genes, Bacterial Macromolecular Systems Models, Bacterial/chemistry/metabolism RNA, Binding Sites Binding, Competitive Escherichia coli/*enzymology/*genetics Evolution, Messenger/metabolism RNA, Molecular Gene Expression Regulation, Molecular Molecular Mimicry Molecular Structure Mutation Operator Regions (Genetics) Protein Structure, Non-U.S. Gov't Threonine-tRNA Ligase/*chemistry/genetics/*metabolism, ROMBY, Tertiary Protein Subunits RNA, Transfer, Unité ARN, WESTHOF

2002

Lindell M, Romby P, Wagner E G

Lead(II) as a probe for investigating RNA structure in vivo Article de journal

Dans: RNA, vol. 8, no. 4, p. 534-541, 2002, ISBN: 11991646, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: Base Sequence Biochemistry/*methods Comparative Study Lead/*chemistry/*metabolism Molecular Sequence Data Nucleic Acid Conformation Porins/genetics RNA/*chemistry/*metabolism RNA, Messenger/chemistry/metabolism Support, Non-U.S. Gov't, ROMBY, Unité ARN

Brunel C, Marquet R, Romby P, Ehresmann C

RNA loop-loop interactions as dynamic functional motifs Article de journal

Dans: Biochimie, vol. 84, no. 9, p. 925-944, 2002, ISBN: 12458085, (0300-9084 Journal Article Review Review Literature).

Résumé | Liens | BibTeX | Étiquettes: Animals Base Pairing Base Sequence Dimerization HIV-1/genetics Human Kinetics Molecular Sequence Data *Nucleic Acid Conformation RNA/genetics/*metabolism Support, MARQUET, Non-U.S. Gov't Thermodynamics, ROMBY, Unité ARN

Wagner E G, Altuvia S, Romby P

Antisense RNAs in bacteria and their genetic elements. Chapitre d'ouvrage

Dans: Dunlap, J C; Wu, C. -ting (Ed.): Advances in Genetics: Homology Effects., vol. 46, p. 361-398, Academic Press, 2002, ISBN: 11931231, (0065-2660 Review Review, Academic).

Résumé | Liens | BibTeX | Étiquettes: Antisense/*genetics/metabolism RNA, Bacteria/*genetics/metabolism Bacteriophages/genetics Chromosomes, Bacterial Models, Bacterial/*genetics/metabolism Support, Bacterial/genetics Conjugation, Genetic DNA Replication/genetics DNA Transposable Elements/genetics Gene Expression Regulation, Genetic Mutation Plasmids/genetics RNA, Non-U.S. Gov't, ROMBY, Unité ARN

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