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2021

Méteignier Louis-Valentin, Ghandour Rabea, Zimmerman Aude, Kuhn Lauriane, Meurer Jörg, Zoschke Reimo, Hammani Kamel

Arabidopsis mTERF9 protein promotes chloroplast ribosomal assembly and translation by establishing ribonucleoprotein interactions in vivo Article de journal

Dans: Nucleic Acids Research, vol. 49, no. 2, p. 1114–1132, 2021, ISSN: 1362-4962.

Résumé | Liens | BibTeX | Étiquettes: 16S, 23S, Arabidopsis, Arabidopsis Proteins, Chloroplast Proteins, Chloroplasts, Gene Expression Regulation, Organelle Biogenesis, Peptide Termination Factors, Plant, Polyribosomes, PPSE, Protein Biosynthesis, Recombinant Proteins, Ribonucleoproteins, Ribosomal, ribosomes, RNA, Substrate Specificity

2012

Niehus Sebastian, Giammarinaro Philippe, Liégeois Samuel, Quintin Jessica, Ferrandon Dominique

Fly culture collapse disorder: detection, prophylaxis and eradication of the microsporidian parasite Tubulinosema ratisbonensis infecting Drosophila melanogaster Article de journal

Dans: Fly (Austin), vol. 6, no. 3, p. 193–204, 2012, ISSN: 1933-6942.

Résumé | Liens | BibTeX | Étiquettes: Animals, Apansporoblastina, Apansporoblastina/*genetics/physiology, Base Sequence, cure, Disinfection, Disinfection/methods, DNA, DNA Primers, Drosophila melanogaster/*microbiology, ferrandon, fumagillin, Fungal, Fungal/chemistry, M3i, microsporidia, obligate intracellular parasitism, PCR detection, Phylogeny, Polymerase Chain Reaction, Polymerase Chain Reaction/methods, prophylaxis, Ribosomal, Ribosomal/chemistry, Sequence Alignment, Tubulinosema ratisbonensis

2009

Parisien M, Cruz J A, Westhof E, Major F

New metrics for comparing and assessing discrepancies between RNA 3D structures and models Article de journal

Dans: RNA, vol. 15, no. 10, p. 1875-1885, 2009, ISBN: 19710185, (1469-9001 (Electronic) 1355-8382 (Linking) Comparative Study Journal Article Research Support, Non-U.S. Gov't).

Résumé | Liens | BibTeX | Étiquettes: 28S/*chemistry Rats, Animals Base Pairing Calibration *Models, Molecular *Nucleic Acid Conformation RNA, Ribosomal, Unité ARN, WESTHOF

Benelli D, Marzi S, Mancone C, Alonzi T, la Teana A, Londei P

Function and ribosomal localization of aIF6, a translational regulator shared by archaea and eukarya Article de journal

Dans: Nucleic Acids Res, vol. 37, no. 1, p. 256-267, 2009, ISBN: 19036786, (1362-4962 (Electronic) Journal Article Research Support, Non-U.S. Gov't).

Résumé | Liens | BibTeX | Étiquettes: 23S/chemistry/metabolism Ribosomal Proteins/metabolism Ribosome Subunits, Archaeal Proteins/analysis/chemistry/*metabolism Base Sequence Binding Sites Cell Cycle Cloning, Archaeal/*metabolism Ribosomes/metabolism Sulfolobus solfataricus/*genetics/metabolism, Large, Molecular Eukaryotic Initiation Factors/chemistry Models, Molecular Molecular Sequence Data Prokaryotic Initiation Factors/analysis/chemistry/*metabolism *Protein Biosynthesis RNA, Ribosomal, ROMBY, Unité ARN

2006

Lescoute A, Westhof E

The interaction networks of structured RNAs Article de journal

Dans: Nucleic Acids Res, vol. 34, no. 22, p. 6587-6604, 2006, ISBN: 17135184, (1362-4962 (Electronic) Journal Article Research Support, Non-U.S. Gov't).

Résumé | Liens | BibTeX | Étiquettes: 16S/chemistry RNA, 23S/chemistry Ribonuclease P/chemistry, Base Pairing Base Sequence Introns *Models, Catalytic/chemistry RNA, Molecular Molecular Sequence Data Nucleic Acid Conformation RNA/*chemistry RNA, Ribosomal, Unité ARN, WESTHOF

Kondo J, Urzhumtsev A, Westhof E

Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site Article de journal

Dans: Nucleic Acids Res, vol. 34, no. 2, p. 676-685, 2006, ISBN: 16452297, (1362-4962 (Electronic) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/chemistry RNA, 18S/*chemistry Research Support, Animals Comparative Study Crystallography, Bacterial/chemistry RNA, Molecular Nebramycin/analogs & derivatives/chemistry Nucleic Acid Conformation RNA, Non-U.S. Gov't Ribosomes/chemistry Tetrahymena thermophila/genetics, Protozoan/chemistry RNA, Ribosomal, Unité ARN, WESTHOF, X-Ray Genetic Code Humans *Models

2005

Jenner L, Romby P, Rees B, Schulze-Briese C, Springer M, Ehresmann C, Ehresmann B, Moras D, Yusupova G, Yusupov M

Translational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding Article de journal

Dans: Science, vol. 308, no. 5718, p. 120-123, 2005, ISBN: 15802605, (1095-9203 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/chemistry/metabolism RNA, Bacterial/*chemistry/metabolism RNA, Messenger/*chemistry/metabolism RNA, Met/chemistry/metabolism *Regulatory Sequences, Molecular Nucleic Acid Conformation *Protein Biosynthesis RNA, Non-U.S. Gov't Ribosomal Proteins/metabolism Ribosomes/*metabolism Thermus thermophilus/genetics/*metabolism Threonine-tRNA Ligase/genetics/metabolism, Ribonucleic Acid Repressor Proteins/*metabolism Research Support, Ribosomal, ROMBY, ROMBY Bacterial Proteins/metabolism Base Pairing Binding Sites Crystallization Crystallography, Transfer, Unité ARN, X-Ray Fourier Analysis Models

Francois B, Russell R J, Murray J B, Aboul-ela F, Masquida B, Vicens Q, Westhof E

Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding Article de journal

Dans: Nucleic Acids Res, vol. 33, no. 17, p. 5677-5690, 2005, ISBN: 16214802, (1362-4962 (Electronic) Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry Research Support, Adenine/chemistry Aminoglycosides/*chemistry Anti-Bacterial Agents/*chemistry Anticodon/chemistry Base Sequence Binding Sites Codon/chemistry Crystallography, Molecular Oligoribonucleotides/*chemistry Paromomycin/analogs & derivatives/chemistry RNA, Non-U.S. Gov't Ribosomes/chemistry Ribostamycin/chemistry, Ribosomal, Unité ARN, WESTHOF, X-Ray Framycetin/chemistry Gentamicins/chemistry Kanamycin/chemistry *Models

2004

Mathy N, Pellegrini O, Serganov A, Patel D J, Ehresmann C, Portier C

Specific recognition of rpsO mRNA and 16S rRNA by Escherichia coli ribosomal protein S15 relies on both mimicry and site differentiation Article de journal

Dans: Mol Microbiol, vol. 52, no. 3, p. 661-675, 2004, ISBN: 15101974, (0950-382x Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/chemistry/genetics/*metabolism Recombinant Fusion Proteins/metabolism Ribosomal Proteins/chemistry/*genetics/*metabolism Sequence Alignment Support, Bacterial Models, EHRESMANN Amino Acid Sequence Base Sequence Escherichia coli Proteins/chemistry/genetics/*metabolism Gene Expression Regulation, Messenger/metabolism RNA, Molecular *Molecular Mimicry Molecular Sequence Data Mutagenesis, Non-U.S. Gov't Support, P.H.S., Ribosomal, Secondary RNA, Site-Directed Nucleic Acid Conformation Protein Structure, U.S. Gov't, Unité ARN

Auffinger P, Bielecki L, Westhof E

Symmetric K+ and Mg2+ ion-binding sites in the 5S rRNA loop E inferred from molecular dynamics simulations Article de journal

Dans: J Mol Biol, vol. 335, no. 2, p. 555-571, 2004, ISBN: 14672663, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 5S/*chemistry/*metabolism Ribosomal Proteins/*chemistry/metabolism Support, Bacterial/chemistry RNA, Binding Sites Computer Simulation Guanine/chemistry/metabolism Hydrogen Bonding Magnesium/chemistry/*metabolism Models, Molecular Molecular Conformation Nucleic Acid Conformation Potassium/chemistry/*metabolism Protein Binding/genetics RNA, Non-U.S. Gov't Water/chemistry/metabolism, Ribosomal, Unité ARN, WESTHOF, WESTHOF Binding Sites Computer Simulation Guanine/chemistry/metabolism Hydrogen Bonding Magnesium/chemistry/*metabolism Models

2003

Vicens Q, Westhof E

Crystal structure of geneticin bound to a bacterial 16S ribosomal RNA A site oligonucleotide Article de journal

Dans: J Mol Biol, vol. 326, no. 4, p. 1175-1188, 2003, ISBN: 12589761, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry/genetics/metabolism Support, Anti-Bacterial Agents/*chemistry/metabolism Binding Sites Crystallography, Bacterial Gentamicins/*chemistry/metabolism Human Models, Molecular Molecular Structure *Nucleic Acid Conformation Oligonucleotides/*chemistry/genetics/metabolism Protein Binding *Protein Conformation RNA, Non-U.S. Gov't, Ribosomal, Unité ARN, WESTHOF, X-Ray Drug Design Genes

Vicens Q, Westhof E

RNA as a drug target: the case of aminoglycosides Article de journal

Dans: Chembiochem, vol. 4, no. 10, p. 1018-1023, 2003, ISBN: 14523919, (1439-4227 Journal Article Review Review, Tutorial).

Liens | BibTeX | Étiquettes: 16S/*chemistry/drug effects/metabolism Substrate Specificity Technology, Aminoglycosides/*pharmacology Anti-Bacterial Agents/*pharmacology Binding Sites Drug Delivery Systems Models, Catalytic/chemistry/metabolism RNA, Molecular RNA/chemistry/metabolism RNA, Pharmaceutical Water/chemistry, Ribosomal, Unité ARN, WESTHOF

Auffinger P, Bielecki L, Westhof E

The Mg2+ binding sites of the 5S rRNA loop E motif as investigated by molecular dynamics simulations Article de journal

Dans: Chem Biol, vol. 10, no. 6, p. 551-561, 2003, ISBN: 12837388, (1074-5521 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 5S/*chemistry/metabolism Support, Bacterial/*chemistry RNA, Binding Sites Cations, Divalent Computer Simulation Crystallization Electrostatics Hydrogen Bonding Magnesium/*chemistry/metabolism Models, Molecular Molecular Conformation Nucleic Acid Conformation RNA Stability RNA, Non-U.S. Gov't Thermodynamics Water/chemistry, Ribosomal, Unité ARN, WESTHOF

2002

Perederina A., Nevskaya N., Nikonov O., Nikulin A., Dumas P., Yao M., Tanaka I., Garber M., Gongadze G., Nikonov S.

Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex Article de journal

Dans: RNA, vol. 8, no. 12, p. 1548-57, 2002, (1355-8382 Journal Article).

Résumé | BibTeX | Étiquettes: 5S/*chemistry/*metabolism, Acid, Amino, Bacterial, Base, Binding, Bonding, coli/genetics, Conformation, Data, Escherichia, Fragments/chemistry/metabolism, Gov't, Hydrogen, Models, Molecular, Non-U.S., Nucleic, Peptide, Protein, Proteins/*chemistry/*metabolism, Proteins/chemistry/metabolism, Ribosomal, RNA, Sequence, Sites, Support

Vicens Q, Westhof E

Crystal structure of a complex between the aminoglycoside tobramycin and an oligonucleotide containing the ribosomal decoding a site Article de journal

Dans: Chem Biol, vol. 9, no. 6, p. 747-755, 2002, ISBN: 12079787, (1074-5521 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry Support, Anti-Bacterial Agents/*chemistry Binding Sites Crystallography Escherichia coli/metabolism Models, Molecular Oligonucleotides/*chemistry Paromomycin/chemistry Protein Structure, Non-U.S. Gov't Tobramycin/*chemistry, Ribosomal, Secondary Protein Structure, Tertiary RNA, Unité ARN, WESTHOF

Perederina A, Nevskaya N, Nikonov O, Nikulin A, Dumas P, Yao M, Tanaka I, Garber M, Gongadze G, Nikonov S

Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex Article de journal

Dans: RNA, vol. 8, no. 12, p. 1548-1557, 2002, ISBN: 12515387, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 5S/*chemistry/*metabolism Ribosomal Proteins/*chemistry/*metabolism Support, Amino Acid Sequence Bacterial Proteins/chemistry/metabolism Base Sequence Binding Sites Escherichia coli/genetics Hydrogen Bonding Models, Molecular Molecular Sequence Data Nucleic Acid Conformation Peptide Fragments/chemistry/metabolism Protein Conformation RNA, Non-U.S. Gov't, Ribosomal, Unité ARN

2001

Vicens Q, Westhof E

Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site Article de journal

Dans: Structure, vol. 9, no. 8, p. 647-658, 2001, ISBN: 11587639, (0969-2126 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry Ribosomes/*chemistry Spectrometry, Amino Acid Motifs Anti-Bacterial Agents/chemistry Base Sequence Binding Sites Crystallography, Mass, Matrix-Assisted Laser Desorption-Ionization Support, Molecular Molecular Sequence Data Mutation Paromomycin/*chemistry Protein Structure, Non-U.S. Gov't Tobramycin/chemistry Water/chemistry, Ribosomal, Secondary RNA, Unité ARN, X-Ray Escherichia coli/metabolism Magnetic Resonance Spectroscopy Models

Tishchenko S, Nikulin A, Fomenkova N, Nevskaya N, Nikonov O, Dumas P, Moine H, Ehresmann B, Ehresmann C, Piendl W, Lamzin V, Garber M, Nikonov S

Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii Article de journal

Dans: J Mol Biol, vol. 311, no. 2, p. 311-324, 2001, ISBN: 11478863, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry/genetics/*metabolism RNA-Binding Proteins/chemistry/metabolism Ribosomal Proteins/*chemistry/*metabolism Ribosomes/chemistry/genetics/metabolism Sequence Alignment Substrate Specificity Support, Amino Acid Sequence Archaeal Proteins/chemistry/metabolism Bacteria/chemistry/genetics Base Sequence Binding Sites Conserved Sequence/genetics Crystallography, Archaeal/chemistry/genetics/metabolism RNA, Molecular Human Hydrogen Bonding Methanococcus/*chemistry/*genetics Models, Molecular Molecular Sequence Data Nucleic Acid Conformation Protein Binding Protein Structure, Non-U.S. Gov't, Ribosomal, Secondary RNA, Unité ARN, X-Ray Evolution

Serganov A, Benard L, Portier C, Ennifar E, Garber M, Ehresmann B, Ehresmann C

Role of conserved nucleotides in building the 16 S rRNA binding site for ribosomal protein S15 Article de journal

Dans: J Mol Biol, vol. 305, no. 4, p. 785-803, 2001, ISBN: 11162092, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/chemistry/*genetics/*metabolism RNA-Binding Proteins/chemistry/metabolism Ribosomal Proteins/chemistry/*metabolism Sequence Alignment Support, Amino Acid Sequence Base Pairing Base Sequence Binding Sites Conserved Sequence/*genetics *Escherichia coli/chemistry/genetics/metabolism Models, ENNIFAR, Molecular Molecular Sequence Data Mutation/genetics Nuclease Protection Assays Phylogeny Protein Binding Protein Conformation Purines/metabolism RNA, Non-U.S. Gov't Thermodynamics Thermus thermophilus/chemistry, Ribosomal, Unité ARN

2000

Nikulin A, Serganov A, Ennifar E, Tishchenko S, Nevskaya N, Shepard W, Portier C, Garber M, Ehresmann B, Ehresmann C, Nikonov S, Dumas P

Crystal structure of the S15-rRNA complex Article de journal

Dans: Nat Struct Biol, vol. 7, no. 4, p. 273-277, 2000, ISBN: 10742169, (1072-8368 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry/genetics/*metabolism Ribosomal Proteins/*chemistry/*metabolism Structure-Activity Relationship Support, Amino Acid Sequence Base Pairing/drug effects/genetics Base Sequence Binding Sites/drug effects Conserved Sequence/genetics Crystallography, Bacterial/chemistry/genetics/metabolism RNA, ENNIFAR, Molecular Molecular Sequence Data *Nucleic Acid Conformation/drug effects Protein Conformation RNA, Non-U.S. Gov't Thermus thermophilus/*chemistry/genetics, Ribosomal, Unité ARN, X-Ray Magnesium/pharmacology Models

Moine H, Squires C L, Ehresmann B, Ehresmann C

In vivo selection of functional ribosomes with variations in the rRNA-binding site of Escherichia coli ribosomal protein S8: evolutionary implications Article de journal

Dans: Proc Natl Acad Sci U S A, vol. 97, no. 2, p. 605-610, 2000, ISBN: 10639126, (0027-8424http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10639126 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/genetics/metabolism Recombinant Fusion Proteins/genetics/metabolism Ribosomal Proteins/genetics/*metabolism Ribosomes/genetics/*metabolism Spectinomycin/pharmacology Support, Base Sequence Binding Sites/genetics Binding, Competitive Cell Division/genetics Cloning, Microbial Escherichia coli/drug effects/*genetics/metabolism Evolution, Molecular Drug Resistance, Molecular Protein Binding RNA, P.H.S. Variation (Genetics), Ribosomal, Ribosomal/genetics/*metabolism RNA, U.S. Gov't, Unité ARN

Ennifar E, Nikulin A, Tishchenko S, Serganov A, Nevskaya N, Garber M, Ehresmann B, Ehresmann C, Nikonov S, Dumas P

The crystal structure of UUCG tetraloop Article de journal

Dans: J Mol Biol, vol. 304, no. 1, p. 35-42, 2000, ISBN: 11071808, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry/genetics/*metabolism Ribosomal Proteins/chemistry/*metabolism Solvents Support, Base Sequence Crystallography, Biomolecular *Nucleic Acid Conformation RNA Stability RNA, ENNIFAR, Molecular Molecular Sequence Data Motion Nuclear Magnetic Resonance, Non-U.S. Gov't Thermodynamics, Ribosomal, Unité ARN, X-Ray Hydrogen Bonding Models

1997

Serganov A, Rak A, Garber M, Reinbolt J, Ehresmann B, Ehresmann C, Grunberg-Manago M, Portier C

Ribosomal protein S15 from Thermus thermophilus--cloning, sequencing, overexpression of the gene and RNA-binding properties of the protein Article de journal

Dans: Eur J Biochem, vol. 246, no. 2, p. 291-300, 1997, ISBN: 9208917, (0014-2956 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/metabolism RNA-Binding Proteins/*genetics/metabolism Ribosomal Proteins/*genetics/metabolism Sequence Homology, Amino Acid Support, Amino Acid Sequence Base Sequence Cloning, Bacterial Escherichia coli/genetics Molecular Sequence Data Plasmids RNA, Molecular DNA, Non-U.S. Gov't Thermus thermophilus/*genetics, Ribosomal, Unité ARN

Moine H, Nurse K, Ehresmann B, Ehresmann C, Ofengand J

Conformational analysis of Escherichia coli 30S ribosomes containing the single-base mutations G530U, U1498G, G1401C, and C1501G and the double-base mutation G1401C/C1501G Article de journal

Dans: Biochemistry, vol. 36, no. 44, p. 13700-13709, 1997, ISBN: 9354641, (0006-2960 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/chemical synthesis/*chemistry/genetics Ribosomes/chemistry/genetics Structure-Activity Relationship Support, Bacterial/*chemistry/genetics RNA, Base Sequence Cytosine Nucleotides/genetics Deoxyuridine Escherichia coli/genetics Guanine Nucleotides/genetics Molecular Sequence Data *Mutagenesis, Non-U.S. Gov't, Ribosomal, Site-Directed *Nucleic Acid Conformation RNA, Unité ARN

Moine H, Cachia C, Westhof E, Ehresmann B, Ehresmann C

The RNA binding site of S8 ribosomal protein of Escherichia coli: Selex and hydroxyl radical probing studies Article de journal

Dans: RNA, vol. 3, no. 3, p. 255-268, 1997, ISBN: 9056763, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/chemistry/metabolism Ribosomal Proteins/chemistry/*metabolism Support, Autoradiography Base Sequence Binding Sites Consensus Sequence Escherichia coli Genetic Techniques Hydroxyl Radical/chemistry Models, Bacterial/*metabolism RNA, Molecular Molecular Sequence Data Nucleic Acid Conformation Phylogeny Polymerase Chain Reaction RNA, Non-U.S. Gov't, Ribosomal, Unité ARN

Masquida B, Felden B, Westhof E

Context dependent RNA-RNA recognition in a three-dimensional model of the 16S rRNA core Article de journal

Dans: Bioorg Med Chem, vol. 5, no. 6, p. 1021-1035, 1997, ISBN: 9222495, (0968-0896 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry/*metabolism Ribosomal Proteins/chemistry Substrate Specificity Support, Base Sequence Escherichia coli/metabolism *Models, Molecular Molecular Sequence Data *Nucleic Acid Conformation Peptide Mapping RNA/*chemistry/*metabolism RNA, Non-U.S. Gov't, Ribosomal, Unité ARN

1996

Serganov A A, Masquida B, Westhof E, Cachia C, Portier C, Garber M, Ehresmann B, Ehresmann C

The 16S rRNA binding site of Thermus thermophilus ribosomal protein S15: comparison with Escherichia coli S15, minimum site and structure Article de journal

Dans: RNA, vol. 2, no. 11, p. 1124-1138, 1996, ISBN: 8903343, (1355-8382 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/chemistry/genetics/*metabolism Ribosomal Proteins/*metabolism Species Specificity Support, Bacterial/chemistry/genetics/*metabolism RNA, Base Sequence Binding Sites/genetics Comparative Study Computer Simulation Conserved Sequence Escherichia coli/genetics/*metabolism Magnesium/metabolism Models, Molecular Molecular Sequence Data Mutation Nucleic Acid Conformation RNA, Non-U.S. Gov't Thermodynamics Thermus thermophilus/genetics/*metabolism, Ribosomal, Unité ARN

1995

O'Connor M., Brunelli C. A., Firpo M. A., Gregory S. T., Lieberman K. R., Lodmell J. S., Moine H., Ryk D. I. Van, Dahlberg A. E.

Genetic probes of ribosomal RNA function Article de journal

Dans: Biochem Cell Biol, vol. 73, no. 11-12, p. 859-68, 1995, (0829-8211 Journal Article Review Review, Tutorial).

Résumé | BibTeX | Étiquettes: 16S/genetics, Acid, Base, Conformation, Data, Gov't, Messenger/genetics, Molecular, Mutation, Non-U.S., Nucleic, P.H.S., Probes, Ribosomal, Ribosomal/*genetics, RNA, Sequence, Support, Transfer/genetics, U.S.

O'Connor M, Brunelli C A, Firpo M A, Gregory S T, Lieberman K R, Lodmell J S, Moine H, Ryk D I Van, Dahlberg A E

Genetic probes of ribosomal RNA function Article de journal

Dans: Biochem Cell Biol, vol. 73, no. 11-12, p. 859-868, 1995, ISBN: 8722001, (0829-8211 Journal Article Review Review, Tutorial).

Résumé | Liens | BibTeX | Étiquettes: 16S/genetics RNA, Base Sequence Molecular Sequence Data Mutation Nucleic Acid Conformation RNA Probes RNA, Messenger/genetics RNA, Non-U.S. Gov't Support, P.H.S., Ribosomal, Ribosomal/*genetics RNA, Transfer/genetics Support, U.S. Gov't, Unité ARN

1994

Moine H., Dahlberg A. E.

Mutations in helix 34 of Escherichia coli 16 S ribosomal RNA have multiple effects on ribosome function and synthesis Article de journal

Dans: J Mol Biol, vol. 243, no. 3, p. 402-12, 1994, (0022-2836 Journal Article).

Résumé | BibTeX | Étiquettes: *Mutation, *Nucleic, *Translation, &, 16S/*chemistry/genetics, Acid, Base, beta-Galactosidase/genetics, Codon, coli/*genetics/growth, Conformation, Data, development, Escherichia, Genetic, Gov't, Molecular, Non-U.S., P.H.S., Ribosomal, Ribosomes/*metabolism, RNA, Sequence, Support, Terminator, U.S.

Vysotskaya V, Tischenko S, Garber M, Kern D, Mougel M, Ehresmann C, Ehresmann B

The ribosomal protein S8 from Thermus thermophilus VK1. Sequencing of the gene, overexpression of the protein in Escherichia coli and interaction with rRNA Article de journal

Dans: Eur J Biochem, vol. 223, no. 2, p. 437-445, 1994, ISBN: 7519982, (0014-2956 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*metabolism Recombinant Proteins/metabolism Ribosomal Proteins/chemistry/*genetics/isolation & purification/metabolism Sequence Alignment Support, Amino Acid Sequence Base Sequence Blotting, Bacterial Molecular Sequence Data Molecular Weight Nucleic Acid Hybridization Polymerase Chain Reaction Promoter Regions (Genetics) Protein Binding Protein Structure, Bacterial/chemistry/genetics/isolation & purification Escherichia coli/genetics/metabolism *Gene Expression *Genes, Bacterial/metabolism RNA, Genetic, Molecular DNA, Non-U.S. Gov't Thermus thermophilus/*genetics Transcription, Ribosomal, Secondary RNA, Southern Cloning, Unité ARN

Moine H, Dahlberg A E

Mutations in helix 34 of Escherichia coli 16 S ribosomal RNA have multiple effects on ribosome function and synthesis Article de journal

Dans: J Mol Biol, vol. 243, no. 3, p. 402-412, 1994, ISBN: 7966269, (0022-2836 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry/genetics Ribosomes/*metabolism Support, Base Sequence Codon, Genetic beta-Galactosidase/genetics, Non-U.S. Gov't Support, P.H.S. *Translation, Ribosomal, Terminator Escherichia coli/*genetics/growth & development Molecular Sequence Data *Mutation *Nucleic Acid Conformation RNA, U.S. Gov't, Unité ARN

Allmang C, Mougel M, Westhof E, Ehresmann B, Ehresmann C

Role of conserved nucleotides in building the 16S rRNA binding site of E. coli ribosomal protein S8 Article de journal

Dans: Nucleic Acids Res, vol. 22, no. 18, p. 3708-3714, 1994, ISBN: 7937081, (0305-1048 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*chemistry/*metabolism Ribosomal Proteins/*metabolism, Base Sequence Binding Sites Computer Simulation *Conserved Sequence Escherichia coli/metabolism Models, Molecular Molecular Sequence Data *Nucleic Acid Conformation Point Mutation/physiology RNA, Ribosomal, Unité ARN

1993

Muller G, Gaspin C, Etienne A, Westhof E

Automatic display of RNA secondary structures Article de journal

Dans: Comput Appl Biosci, vol. 9, no. 5, p. 551-561, 1993, ISBN: 7507400, (0266-7061 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/chemistry/genetics RNA, 5S/chemistry/genetics Ribonuclease P *Software, Algorithms Bacillus subtilis/chemistry/genetics Base Sequence *Computer Graphics Endoribonucleases/genetics Escherichia coli/chemistry/genetics Molecular Sequence Data Nucleic Acid Conformation RNA/*chemistry/genetics RNA, Bacterial/genetics RNA, Catalytic/genetics RNA, Ribosomal, Unité ARN

Mougel M, Allmang C, Eyermann F, Cachia C, Ehresmann B, Ehresmann C

Minimal 16S rRNA binding site and role of conserved nucleotides in Escherichia coli ribosomal protein S8 recognition Article de journal

Dans: Eur J Biochem, vol. 215, no. 3, p. 787-792, 1993, ISBN: 7689052, (0014-2956 Journal Article).

Résumé | Liens | BibTeX | Étiquettes: 16S/*metabolism Ribosomal Proteins/genetics/*metabolism Support, Adenine/metabolism Bacterial Proteins/metabolism Base Composition Base Sequence Binding Sites Conserved Sequence Escherichia coli/*metabolism Molecular Sequence Data Mutation Nucleic Acid Conformation RNA, Bacterial/metabolism RNA, Non-U.S. Gov't, Ribosomal, ROMBY, Unité ARN

1992

Wilhelm M. L., Baranowski W., Keith G., Wilhelm F. X.

Rapid transfer of small RNAs from a polyacrylamide gel onto a nylon membrane using a gel dryer Article de journal

Dans: Nucleic Acids Res, vol. 20, no. 15, p. 4106, 1992, (0305-1048 Journal Article).

BibTeX | Étiquettes: &, 5S/*isolation, Acrylic, Human, Nuclear/*isolation, Nylons, purification, Resins, Ribosomal, RNA, Small, Transfer/*isolation, Yeasts/genetics

Wilhelm M L, Baranowski W, Keith G, Wilhelm F X

Rapid transfer of small RNAs from a polyacrylamide gel onto a nylon membrane using a gel dryer Article de journal

Dans: Nucleic Acids Res, vol. 20, no. 15, p. 4106, 1992, ISBN: 1508703, (0305-1048 Journal Article).

Liens | BibTeX | Étiquettes: 5S/*isolation & purification RNA, Acrylic Resins Human Nylons RNA, Ribosomal, Small Nuclear/*isolation & purification RNA, Transfer/*isolation & purification Yeasts/genetics, Unité ARN