Publications
2012
Cruz J A, Blanchet M F, Boniecki M, Bujnicki J M, Chen S J, Cao S, Das R, Ding F, Dokholyan N V, Flores S C, Huang L, Lavender C A, Lisi V, Major F, Mikolajczak K, Patel D J, Philips A, Puton T, Santalucia J, Sijenyi F, Hermann T, Rother K, Rother M, Serganov A, Skorupski M, Soltysinski T, Sripakdeevong P, Tuszynska I, Weeks K M, Waldsich C, Wildauer M, Leontis N B, Westhof E
RNA-Puzzles: A CASP-like evaluation of RNA three-dimensional structure prediction. Journal Article
In: RNA, vol. 18, no. 4, pp. 610-625, 2012, ISBN: 2236129, (Published in Advance February 23, 2012).
Abstract | Links | BibTeX | Tags: 3D prediction Bioinformatics Force fields Structure, Unité ARN, WESTHOF, WESTHOF 3D prediction Bioinformatics Force fields Structure
@article{,
title = {RNA-Puzzles: A CASP-like evaluation of RNA three-dimensional structure prediction.},
author = {J A Cruz and M F Blanchet and M Boniecki and J M Bujnicki and S J Chen and S Cao and R Das and F Ding and N V Dokholyan and S C Flores and L Huang and C A Lavender and V Lisi and F Major and K Mikolajczak and D J Patel and A Philips and T Puton and J Santalucia and F Sijenyi and T Hermann and K Rother and M Rother and A Serganov and M Skorupski and T Soltysinski and P Sripakdeevong and I Tuszynska and K M Weeks and C Waldsich and M Wildauer and N B Leontis and E Westhof},
url = {http://www.ncbi.nlm.nih.gov/pubmed/22361291?dopt=Abstract},
doi = {10.1261/rna.031054.111},
isbn = {2236129},
year = {2012},
date = {2012-01-01},
journal = {RNA},
volume = {18},
number = {4},
pages = {610-625},
abstract = {We report the results of a first, collective, blind experiment in RNA three-dimensional (3D) structure prediction, encompassing three prediction puzzles. The goals are to assess the leading edge of RNA structure prediction techniques; compare existing methods and tools; and evaluate their relative strengths, weaknesses, and limitations in terms of sequence length and structural complexity. The results should give potential users insight into the suitability of available methods for different applications and facilitate efforts in the RNA structure prediction community in ongoing efforts to improve prediction tools. We also report the creation of an automated evaluation pipeline to facilitate the analysis of future RNA structure prediction exercises.},
note = {Published in Advance February 23, 2012},
keywords = {3D prediction Bioinformatics Force fields Structure, Unité ARN, WESTHOF, WESTHOF 3D prediction Bioinformatics Force fields Structure},
pubstate = {published},
tppubtype = {article}
}