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Prakash Pragya, Roychowdhury-Sinha Arghyashree, Goto Akira

Verloren negatively regulates the expression of IMD pathway dependent antimicrobial peptides in Drosophila Journal Article

In: Scientific Reports, 11 (15549), 2021.

Abstract | Links | BibTeX | Tags: bacteria, Biochemistry, DNA, Fungi, Gene Expression, gene regulation, Genetics, hoffmann, Immunochemistry, Immunology, infection, inflammation, Innate immune cells, innate immunity, M3i, microbiology, Molecular Biology, pathogens, RNA, RNAi, Signal Transduction, Transcription

Dahlet Thomas, Truss Matthias, Frede Ute, Adhami Hala Al, Bardet Anaïs F., Dumas Michael, Vallet Judith, Chicher Johana, Hammann Philippe, Kottnik Sarah, Hansen Peter, Luz Uschi, Alvarez Gonzalo, Auclair Ghislain, Hecht Jochen, Robinson Peter N., Hagemeier Christian, Weber Michael

E2F6 initiates stable epigenetic silencing of germline genes during embryonic development Journal Article

In: Nature Communications, 12 (1), pp. 3582, 2021, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: Animals, Binding Sites, Cell Differentiation, CpG Islands, CRISPR-Cas Systems, DNA Methylation, E2F6 Transcription Factor, Embryonic Development, Epigenesis, Gene Silencing, Genetic, Germ Cells, Knockout, Mice, Mouse Embryonic Stem Cells, Polycomb Repressive Complex 1, PPSE, RNA, Small Interfering

Scheer Hélène, Almeida Caroline, Ferrier Emilie, Simonnot Quentin, Poirier Laure, Pflieger David, Sement François M., Koechler Sandrine, Piermaria Christina, Krawczyk Paweł, Mroczek Seweryn, Chicher Johana, Kuhn Lauriane, Dziembowski Andrzej, Hammann Philippe, Zuber Hélène, Gagliardi Dominique

The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis Journal Article

In: Nature Communications, 12 (1), pp. 1298, 2021, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: Arabidopsis, Arabidopsis Proteins, Co-Repressor Proteins, DEAD-box RNA Helicases, Gene Expression Regulation, Humans, messenger, Plant, PPSE, Proto-Oncogene Proteins, Ribonucleoproteins, RNA, RNA Nucleotidyltransferases, RNA Stability, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins, Small Interfering, Tobacco, transcriptome, Uridine

Westhof E, Leontis N B

An RNA-centric historical narrative around the Protein Data Bank Journal Article

In: J Biol Chem, 296 , pp. 100555, 2021, ISBN: 33744291, (1083-351X (Electronic) 0021-9258 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: Computational Biology, Databases, modelling, Protein Data Bank, RNA, Structural biology, Unité ARN, WESTHOF

Chagot M E, Quinternet M, Manival X, Lebars I

Application of NMR Spectroscopy to Determine the 3D Structure of Small Non-Coding RNAs Journal Article

In: Methods Mol Biol, 2300 , pp. 251-266, 2021, ISBN: 33792884, (1940-6029 (Electronic) 1064-3745 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: 3D structure, dynamics, ENNIFAR, NMR, RNA, Unité ARN

Bouhedda F, Cubi R, Baudrey S, Ryckelynck M

microIVC-Seq: A Method for Ultrahigh-Throughput Development and Functional Characterization of Small RNAs Book Chapter

In: Rederstorff, M (Ed.): Small Non-Coding RNAs, 2300 , pp. 203-237, Springer Protocols, Humana Press, New York, NY, Small Non-Coding RNAs, 2021, ISBN: 978-1-0716-1385-6/ISSN, (1940-6029 (Electronic) 1064-3745 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Artificial RNAs, directed evolution, Droplet microfluidics, Functional screening, In vitro selection, RNA, RYCKELYNCK, RYCKELYNCK Artificial RNAs, Unité ARN

Schenckbecher E, Bec G, Sakamoto T, Meyer B, Ennifar E

Biophysical Studies of the Binding of Viral RNA with the 80S Ribosome Using switchSENSE Journal Article

In: Methods Mol Biol, 2263 , pp. 341-350, 2021, ISBN: 33877606, (1940-6029 (Electronic) 1064-3745 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Biophysics, ENNIFAR, Kinetics, Ribosome, RNA, switchSENSE, Unité ARN

Gilmer O, Quignon E, Jousset A C, Paillart J C, Marquet R, Vivet-Boudou V

Chemical and Enzymatic Probing of Viral RNAs: From Infancy to Maturity and Beyond Journal Article

In: Viruses, 13 (10), pp. 1894, 2021.

Abstract | Links | BibTeX | Tags: Capillary electrophoresis, chemical probe, enzymatic probe, high-throughput sequencing, MARQUET, mutational profiling, PAILLART, RNA, SHAPE, structure, Unité ARN

Méteignier Louis-Valentin, Ghandour Rabea, Zimmerman Aude, Kuhn Lauriane, Meurer Jörg, Zoschke Reimo, Hammani Kamel

Arabidopsis mTERF9 protein promotes chloroplast ribosomal assembly and translation by establishing ribonucleoprotein interactions in vivo Journal Article

In: Nucleic Acids Research, 49 (2), pp. 1114–1132, 2021, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: 16S, 23S, Arabidopsis, Arabidopsis Proteins, Chloroplast Proteins, Chloroplasts, Gene Expression Regulation, Organelle Biogenesis, Peptide Termination Factors, Plant, Polyribosomes, PPSE, Protein Biosynthesis, Recombinant Proteins, Ribonucleoproteins, Ribosomal, ribosomes, RNA, Substrate Specificity


Ryckelynck M

Development and Applications of Fluorogen/Light-Up RNA Aptamer Pairs for RNA Detection and More Book Chapter

In: 2166 , pp. 73-102, Methods in Molecular Biology, 2020.

Abstract | Links | BibTeX | Tags: aptamer, biosensing, Engineering, fluorogen, Functional screening, Live-cell imaging, RNA, RYCKELYNCK, SELEX, Unité ARN

Bernacchi S, Ennifar E

Analysis of the HIV-1 Genomic RNA Dimerization Initiation Site Binding to Aminoglycoside Antibiotics Using Isothermal Titration Calorimetry Book Chapter

In: Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, 2113 , pp. 237-250, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006318.

Abstract | Links | BibTeX | Tags: Aminoglycosides, dimerization, drug interaction, ENNIFAR, HIV-1, initiation site, ITC, MARQUET, PAILLART, RNA, Thermodynamics RNA, Unité ARN, Viral


Westhof E

Pseudouridines or how to draw on weak energy differences Journal Article

In: Biochem Biophys Res Commun, 520 (4), pp. 702-704, 2019, ISBN: 31761086.

Abstract | Links | BibTeX | Tags: RNA, Unité ARN, WESTHOF


Ferreira Flávia Viana, Aguiar Eric Roberto Guimarães Rocha, Olmo Roenick Proveti, de Oliveira Karla Pollyanna Vieira, Silva Emanuele Guimarães, Sant'Anna Maurício Roberto Viana, de Gontijo Nelder Figueiredo, Kroon Erna Geessien, Imler Jean-Luc, Marques João Trindade

The small non-coding RNA response to virus infection in the Leishmania vector Lutzomyia longipalpis Journal Article

In: PLoS Negl Trop Dis, 12 (6), pp. e0006569, 2018, ISSN: 1935-2735.

Abstract | Links | BibTeX | Tags: Animals, Host-Pathogen Interactions, imler, Insect Vectors, Leishmania, M3i, ncRNA, Psychodidae, RNA, RNA Interference, Small Interfering, Untranslated, Vesicular stomatitis Indiana virus, Viral


Dietrich Damien, Martin Praxedis, Flacher Vincent, Sun Yu, Jarrossay David, Brembilla Nicolo, Mueller Christopher, Arnett Heather A, Palmer Gaby, Towne Jennifer, Gabay Cem

Interleukin-36 potently stimulates human M2 macrophages, Langerhans cells and keratinocytes to produce pro-inflammatory cytokines Journal Article

In: Cytokine, 84 , pp. 88–98, 2016, ISSN: 1096-0023.

Abstract | Links | BibTeX | Tags: agonists, ANTAGONIST, BLOOD, Cells, Cellular, Chemistry, Cultured, cytokine, CYTOKINE PRODUCTION, Cytokines, Dendritic Cells, DERMATOLOGY, Expression, Human, Humans, IL-1, IL-1R1, IL-1ra, IL-36, IL-36R, Immunoassay, Immunology, immunopathology, inflammation, Interleukin, Interleukin-1 Receptor Accessory Protein, Interleukin-1 Type I, KERATINOCYTES, Langerhans Cells, Macrophage, Macrophages, messenger, Molecular Biology, Monocytes, mRNA, Myeloid Cells, pathology, Phenotype, PRODUCTION, PROINFLAMMATORY CYTOKINES, Receptor, receptor antagonist, Receptors, RNA, signaling, Skin, target, Team-Mueller, TONSIL


Aguiar Eric Roberto Guimarães Rocha, Olmo Roenick Proveti, Paro Simona, Ferreira Flavia Viana, da de Faria Isaque João Silva, Todjro Yaovi Mathias Honore, Lobo Francisco Pereira, Kroon Erna Geessien, Meignin Carine, Gatherer Derek, Imler Jean-Luc, Marques João Trindade

Sequence-independent characterization of viruses based on the pattern of viral small RNAs produced by the host Journal Article

In: Nucleic Acids Research, 43 (13), pp. 6191–6206, 2015, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: Animals, Contig Mapping, Female, imler, insects, M3i, meignin, Ovary, Plants, RNA, Sequence Analysis, Small Untranslated, Vertebrates, Viral, Viral Tropism, viruses

Paro Simona, Imler Jean-Luc, Meignin Carine

Sensing viral RNAs by Dicer/RIG-I like ATPases across species Journal Article

In: Current Opinion in Immunology, 32 , pp. 106–113, 2015, ISSN: 1879-0372.

Abstract | Links | BibTeX | Tags: Adenosine Triphosphatases, Animals, DEAD-box RNA Helicases, Humans, imler, M3i, meignin, Protein Binding, Protein Interaction Domains and Motifs, Ribonuclease III, RNA, Viral, Virus Diseases, viruses

Jacquemin Clément, Schmitt Nathalie, Contin-Bordes Cécile, Liu Yang, Narayanan Priya, Seneschal Julien, Maurouard Typhanie, Dougall David, Davizon Emily Spence, Dumortier Hélène, Douchet Isabelle, Raffray Loïc, Richez Christophe, Lazaro Estibaliz, Duffau Pierre, Truchetet Marie-Elise, Khoryati Liliane, Mercié Patrick, Couzi Lionel, Merville Pierre, Schaeverbeke Thierry, Viallard Jean-François, Pellegrin Jean-Luc, Moreau Jean-François, Muller Sylviane, Zurawski Sandy, Coffman Robert L, Pascual Virginia, Ueno Hideki, Blanco Patrick

OX40 Ligand Contributes to Human Lupus Pathogenesis by Promoting Ŧ Follicular Helper Response Journal Article

In: Immunity, 42 (6), pp. 1159–1170, 2015, ISSN: 1097-4180.

Abstract | Links | BibTeX | Tags: Adolescent, Adult, Aged, Antigen Presentation, B-Lymphocytes, Cell Differentiation, Cells, Cultured, Cytokines, Disease Progression, Dumortier, Female, Helper-Inducer, Humans, I2CT, Immunologic Memory, Inducible T-Cell Co-Stimulator Protein, Lupus Erythematosus, Lymphocyte Activation, Male, Middle Aged, Molecular Targeted Therapy, Myeloid Cells, OX40, OX40 Ligand, Receptors, RNA, Signal Transduction, Systemic, T-Lymphocytes, Team-Dumortier, Toll-Like Receptor 7, Young Adult


Hammann P, Parmentier D, Cerciat M, Reimegård J, Helfer A-C, Boisset S, Guillier M, Vandenesch F, Wagner G E H, Romby P, Fechter P

A method to map changes in bacterial surface composition induced by regulatory RNAs in Escherichia coli and Staphylococcus aureus. Journal Article

In: Biochimie, 106 , pp. 175–179, 2014, ISSN: 1638-6183 0300-9084, (Place: France).

Abstract | Links | BibTeX | Tags: Bacterial Outer Membrane Proteins/metabolism, Bacterial Proteins/*metabolism, Bacterial/genetics/*metabolism, Base Sequence, Carbocyanines/metabolism, Cell Membrane/*metabolism, Cell Wall/metabolism, Confocal, DIGE, Electrophoresis, Escherichia coli/genetics/*metabolism, Gel, Mass, Matrix-Assisted Laser Desorption-Ionization, Microscopy, Molecular Sequence Data, Non-coding RNAs, Post-transcriptional regulation, PPSE, Reproducibility of Results, RNA, Spectrometry, Staining and Labeling/methods, Staphylococcus aureus/genetics/*metabolism, Surface proteins, Two-Dimensional/methods


Petrillo Jessica E, Venter Arno P, Short James R, Gopal Radhika, Deddouche Safia, Lamiable Olivier, Imler Jean-Luc, Schneemann Anette

Cytoplasmic granule formation and translational inhibition of nodaviral RNAs in the absence of the double-stranded RNA binding protein B2 Journal Article

In: Journal of Virology, 87 (24), pp. 13409–13421, 2013, ISSN: 1098-5514.

Abstract | Links | BibTeX | Tags: Animals, Capsid Proteins, Cell Line, Cricetinae, Cytoplasmic Granules, Double-Stranded, imler, M3i, Nodaviridae, Protein Biosynthesis, RNA, RNA Virus Infections, RNA-Binding Proteins, Viral, Viral Proteins


Deleury Emeline, Dubreuil Géraldine, Elangovan Namasivayam, Wajnberg Eric, Reichhart Jean-Marc, Gourbal Benjamin, Duval David, Baron Olga Lucia, Gouzy Jérôme, Coustau Christine

Specific versus non-specific immune responses in an invertebrate species evidenced by a comparative de novo sequencing study Journal Article

In: PLoS ONE, 7 (3), pp. e32512, 2012, ISSN: 1932-6203.

Abstract | Links | BibTeX | Tags: Animals, Biomphalaria, Calmodulin, Cluster Analysis, Complementary, DNA, Expressed Sequence Tags, Ferritins, Gene Expression Profiling, Gene Expression Regulation, High-Throughput Nucleotide Sequencing, Immunity, Innate, M3i, messenger, Pattern Recognition, Phylogeny, Receptors, reichhart, RNA, Signal Transduction, Zinc Fingers

Peltier Claire, Klein Elodie, Hleibieh Kamal, D'Alonzo Massimiliano, Hammann Philippe, Bouzoubaa Salah, Ratti Claudio, Gilmer David

Beet necrotic yellow vein virus subgenomic RNA3 is a cleavage product leading to stable non-coding RNA required for long-distance movement. Journal Article

In: The Journal of general virology, 93 (Pt 5), pp. 1093–1102, 2012, ISSN: 1465-2099 0022-1317, (Place: England).

Abstract | Links | BibTeX | Tags: *Genome, Arabidopsis/virology, Beta vulgaris/virology, Plant Viruses/genetics/*pathogenicity, PPSE, RNA, RNA Stability, Tobacco/virology, Untranslated/*metabolism, Viral, Viral/genetics/*metabolism


Al-Jamal Khuloud T, Gherardini Lisa, Bardi Giuseppe, Nunes Antonio, Guo Chang, Bussy Cyrill, Herrero Antonia M, Bianco Alberto, Prato Maurizio, Kostarelos Kostas, Pizzorusso Tommaso

Functional motor recovery from brain ischemic insult by carbon nanotube-mediated siRNA silencing Journal Article

In: Proceedings of the National Academy of Sciences of the United States of America, 108 (27), pp. 10952–10957, 2011, ISSN: 1091-6490.

Abstract | Links | BibTeX | Tags: Animals, Apoptosis, Base Sequence, Brain Ischemia, carbon, Caspase 3, Caspase Inhibitors, Cell Line, Cells, Cultured, Electron, Endothelin-1, Female, Genetic Therapy, I2CT, Inbred C57BL, Mice, Microscopy, Nanomedicine, Nanotubes, Neurons, Psychomotor Performance, Rats, RNA, RNA Interference, Small Interfering, Sprague-Dawley, Team-Bianco, Transmission


Al-Jamal Khuloud T, Toma Francesca M, Yilmazer Açelya, Ali-Boucetta Hanene, Nunes Antonio, Herrero Maria-Antonia, Tian Bowen, Eddaoudi Ayad, Eddaoui Ayad, Al-Jamal Wafa' T, Bianco Alberto, Prato Maurizio, Kostarelo Kostas

Enhanced cellular internalization and gene silencing with a series of cationic dendron-multiwalled carbon nanotube:siRNA complexes Journal Article

In: FASEB journal: official publication of the Federation of American Societies for Experimental Biology, 24 (11), pp. 4354–4365, 2010, ISSN: 1530-6860.

Abstract | Links | BibTeX | Tags: Biological Transport, carbon, Cations, Cell Line, Cell Survival, Gene Silencing, HeLa Cells, Humans, I2CT, Models, Molecular, Nanotubes, RNA, Small Interfering, Team-Bianco, Transfection, tumor

Ménard-Moyon Cécilia, Kostarelos Kostas, Prato Maurizio, Bianco Alberto

Functionalized carbon nanotubes for probing and modulating molecular functions Journal Article

In: Chemistry & Biology, 17 (2), pp. 107–115, 2010, ISSN: 1879-1301.

Abstract | Links | BibTeX | Tags: Antibodies, Antigens, Atomic Force, Biosensing Techniques, carbon, Drug Delivery Systems, enzymes, Glycoproteins, I2CT, Ion Channels, Microscopy, Nanotubes, RNA, Small Interfering, Team-Bianco

Garcia Alvaro Baeza, Pierce Raymond J, Gourbal Benjamin, Werkmeister Elisabeth, Colinet Dominique, Reichhart Jean-Marc, Dissous Colette, Coustau Christine

Involvement of the cytokine MIF in the snail host immune response to the parasite Schistosoma mansoni Journal Article

In: PLoS Pathog., 6 (9), pp. e1001115, 2010, ISSN: 1553-7374.

Abstract | Links | BibTeX | Tags: Amino Acid, Animals, Apoptosis, Biomphalaria, Blotting, Cell Proliferation, Cells, Cricetinae, Cultured, Hemocytes, Host-Parasite Interactions, Humans, Liver, M3i, Macrophage Migration-Inhibitory Factors, messenger, Oocysts, Recombinant Proteins, reichhart, Reverse Transcriptase Polymerase Chain Reaction, RNA, Schistosoma mansoni, Schistosomiasis mansoni, Sequence Homology, Small Interfering, Western


Herrero Antonia M, Toma Francesca M, Al-Jamal Khuloud T, Kostarelos Kostas, Bianco Alberto, Ros Tatiana Da, Bano Fouzia, Casalis Loredana, Scoles Giacinto, Prato Maurizio

Synthesis and characterization of a carbon nanotube-dendron series for efficient siRNA delivery Journal Article

In: Journal of the American Chemical Society, 131 (28), pp. 9843–9848, 2009, ISSN: 1520-5126.

Abstract | Links | BibTeX | Tags: Acrylates, Animals, Azo Compounds, Biological Transport, carbon, Cytoplasm, Dendrimers, Drug Carriers, Ethylenediamines, Gene Silencing, HeLa Cells, Humans, I2CT, Nanotubes, Polyamines, RNA, Small Interfering, Solubility, Team-Bianco, Thiosemicarbazones, Transfection, water

Podesta Jennifer E, Al-Jamal Khuloud T, Herrero Antonia M, Tian Bowen, Ali-Boucetta Hanene, Hegde Vikas, Bianco Alberto, Prato Maurizio, Kostarelos Kostas

Antitumor activity and prolonged survival by carbon-nanotube-mediated therapeutic siRNA silencing in a human lung xenograft model Journal Article

In: Small (Weinheim an Der Bergstrasse, Germany), 5 (10), pp. 1176–1185, 2009, ISSN: 1613-6829.

Abstract | Links | BibTeX | Tags: Animals, Antineoplastic Agents, Apoptosis, carbon, Cell Line, Cell Proliferation, Electrophoresis, Gene Silencing, Humans, I2CT, Liposomes, Lung Neoplasms, Mice, Nanomedicine, Nanotubes, RNA, Small Interfering, Survival Analysis, Team-Bianco, tumor, Xenograft Model Antitumor Assays

Kemp Cordula, Imler Jean-Luc

Antiviral immunity in drosophila Journal Article

In: Current Opinion in Immunology, 21 (1), pp. 3–9, 2009, ISSN: 1879-0372.

Abstract | Links | BibTeX | Tags: Animals, Argonaute Proteins, Caspases, DEAD-box RNA Helicases, Evolution, Gene Expression Regulation, Host-Pathogen Interactions, imler, M3i, Membrane Proteins, Molecular, Nuclear Proteins, Ribonuclease III, RNA, RNA Helicases, RNA Interference, RNA Virus Infections, RNA Viruses, RNA-Induced Silencing Complex, Viral, Virulence

Kondo J.

[Exploring the "motion" = "function" of the ribosomal A-site molecular switch] Journal Article

In: Tanpakushitsu Kakusan Koso, 54 (11), pp. 1356-62, 2009, (0039-9450 (Print) 0039-9450 (Linking) Journal Article Review).

BibTeX | Tags: *Binding, *RNA/genetics, Agents/adverse, Anti-Bacterial, Bacteria/drug, Biosynthesis/genetics, Crystallography, Disorders/genetics, effects, effects/pharmacology, Hearing, Humans, Mutation, Protein, Ribosomes/chemistry/*genetics/*physiology, RNA, Sites, Transfer, Untranslated, WESTHOF, X-Ray

Berry Bassam, Deddouche Safia, Kirschner Doris, Imler Jean-Luc, Antoniewski Christophe

Viral suppressors of RNA silencing hinder exogenous and endogenous small RNA pathways in Drosophila Journal Article

In: PloS One, 4 (6), pp. e5866, 2009, ISSN: 1932-6203.

Abstract | Links | BibTeX | Tags: Animals, Antiviral Agents, Crosses, Double-Stranded, Gene Silencing, Genetic, Genetically Modified, Heterozygote, imler, Invertebrate, M3i, Photoreceptor Cells, Reverse Transcriptase Polymerase Chain Reaction, RNA, RNA Interference, Transgenes

Stombaugh J, Zirbel C L, Westhof E, Leontis N B

Frequency and isostericity of RNA base pairs Journal Article

In: Nucleic Acids Res, 37 (7), pp. 2294-2312, 2009, ISBN: 19240142, (1362-4962 (Electronic) Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.).

Abstract | Links | BibTeX | Tags: ase Pairing Base Sequence Models, Bacterial/chemistry RNA, Molecular Nucleic Acid Conformation RNA/*chemistry RNA, Ribosomal/chemistry Sequence Alignment Sequence Analysis, RNA, Unité ARN, WESTHOF


Bringel Françoise, Hammann Philippe, Kugler Valérie, Arsène-Ploetze Florence

Lactobacillus plantarum response to inorganic carbon concentrations: PyrR2-dependent and -independent transcription regulation of genes involved in arginine and nucleotide metabolism. Journal Article

In: Microbiology (Reading, England), 154 (Pt 9), pp. 2629–2640, 2008, ISSN: 1350-0872 1350-0872, (Place: England).

Abstract | Links | BibTeX | Tags: Arginine/*biosynthesis, Argininosuccinate Lyase/genetics, Bacterial, Bacterial Proteins/*genetics, Bacterial/genetics, Carbon Compounds, Carbon Dioxide/metabolism, Electrophoresis, Gel, Gene Expression Regulation, Genetic, IMP Dehydrogenase/genetics, Inorganic/*metabolism, Lactobacillus plantarum/enzymology/genetics/*metabolism, Mass, Matrix-Assisted Laser Desorption-Ionization, Nucleotides/*biosynthesis, Pentosyltransferases/*genetics, PPSE, proteomics, Repressor Proteins/*genetics, Reverse Transcriptase Polymerase Chain Reaction, RNA, Spectrometry, Transcription, Two-Dimensional

Geary C., Baudrey S., Jaeger L.

Comprehensive features of natural and in vitro selected GNRA tetraloop-binding receptors Journal Article

In: Nucleic Acids Res, 36 (4), pp. 1138-52, 2008, (1362-4962 (Electronic) Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.).

Abstract | BibTeX | Tags: Acid, Adenine/chemistry, Analysis, Base, Conformation, Data, dimerization, directed, Evolution, KROL, Models, Molecular, Nucleic, RNA, RNA/*chemistry/classification, Sequence, Thermodynamics


Mandin P., Repoila F., Vergassola M., Geissmann T., Cossart P.

Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets Journal Article

In: Nucleic Acids Res, 35 (3), pp. 962-74, 2007, (1362-4962 (Electronic) Journal Article Research Support, Non-U.S. Gov't).

Abstract | BibTeX | Tags: 5', Assay, Bacterial, Base, Biology, Computational, Data, DNA, Electrophoretic, Flanking, Genes, Genomics, Intergenic/chemistry, Listeria, Messenger/chemistry/*metabolism, Mobility, Molecular, monocytogenes/*genetics/metabolism, Region, RNA, ROMBY, Sequence, Shift, Untranslated/analysis/*genetics/metabolism


Shiao Shin-Hong, Whitten Miranda M A, Zachary Daniel, Hoffmann Jules A, Levashina Elena A

Fz2 and cdc42 mediate melanization and actin polymerization but are dispensable for Plasmodium killing in the mosquito midgut Journal Article

In: PLoS Pathog., 2 (12), pp. e133, 2006, ISSN: 1553-7374.

Abstract | Links | BibTeX | Tags: Actins, Animals, Anopheles, Carrier Proteins, cdc42 GTP-Binding Protein, Double-Stranded, Electron, Frizzled Receptors, Gastrointestinal Tract, hoffmann, Host-Parasite Interactions, Immunity, Innate, Insect Vectors, Intestinal Mucosa, M3i, Melanins, Microarray Analysis, Microscopy, Plasmodium berghei, Polymers, Protozoan, RNA, scanning, telomerase

Flacher Vincent, Bouschbacher Marielle, Verronèse Estelle, Massacrier Catherine, Sisirak Vanja, Berthier-Vergnes Odile, de Saint-Vis Blandine, Caux Christophe, Dezutter-Dambuyant Colette, Lebecque Serge, Valladeau Jenny

Human Langerhans cells express a specific TLR profile and differentially respond to viruses and Gram-positive bacteria Journal Article

In: Journal of Immunology (Baltimore, Md.: 1950), 177 (11), pp. 7959–7967, 2006, ISSN: 0022-1767.

Abstract | Links | BibTeX | Tags: bacteria, Double-Stranded, Gram-Positive Bacteria, Human, Humans, Interleukin-6, Interleukin-8, Langerhans Cells, Reverse Transcriptase Polymerase Chain Reaction, RNA, Skin, Team-Mueller, TLR4, TLR7, Toll-Like Receptors, Tumor Necrosis Factor-alpha, viruses

Galiana-Arnoux Delphine, Dostert Catherine, Schneemann Anette, Hoffmann Jules A, Imler Jean-Luc

Essential function in vivo for Dicer-2 in host defense against RNA viruses in drosophila Journal Article

In: Nature Immunology, 7 (6), pp. 590–597, 2006, ISSN: 1529-2908.

Abstract | Links | BibTeX | Tags: Animals, Genetically Modified, hoffmann, imler, M3i, Mutation, Nodaviridae, Ribonuclease III, RNA, RNA Helicases, RNA Interference, RNA Viruses, Viral, Viral Proteins, Virus Replication

Klumpp Cédric, Kostarelos Kostas, Prato Maurizio, Bianco Alberto

Functionalized carbon nanotubes as emerging nanovectors for the delivery of therapeutics Journal Article

In: Biochimica Et Biophysica Acta, 1758 (3), pp. 404–412, 2006, ISSN: 0006-3002.

Abstract | Links | BibTeX | Tags: carbon, DNA, Drug Carriers, Drug Delivery Systems, Humans, I2CT, Nanotubes, RNA, Team-Bianco


Kocks Christine, Cho Ju Hyun, Nehme Nadine, Ulvila Johanna, Pearson Alan M, Meister Marie, Strom Charles, Conto Stephanie L, Hetru Charles, Stuart Lynda M, Stehle Thilo, Hoffmann Jules A, Reichhart Jean-Marc, Ferrandon Dominique, Rämet Mika, Ezekowitz Alan R B

Eater, a transmembrane protein mediating phagocytosis of bacterial pathogens in Drosophila Journal Article

In: Cell, 123 (2), pp. 335–346, 2005, ISSN: 0092-8674.

Abstract | Links | BibTeX | Tags: Amino Acid, Amino Acid Motifs, Animals, Bacterial Infections, Cell Surface, Embryo, Escherichia coli, ferrandon, Flow Cytometry, Frameshift Mutation, Genes, Histidine, hoffmann, In Situ Hybridization, Insect, Insect Proteins, M3i, Macrophages, Membrane Proteins, messenger, Nonmammalian, Open Reading Frames, Phagocytosis, Receptors, reichhart, RNA, RNA Interference, Sequence Homology, Serratia marcescens


Costa A., de Barros J. P. Pais, Keith G., Baranowski W., Desgres J.

Determination of queuosine derivatives by reverse-phase liquid chromatography for the hypomodification study of Q-bearing tRNAs from various mammal liver cells Journal Article

In: J Chromatogr B Analyt Technol Biomed Life Sci, 801 (2), pp. 237-47, 2004, (1570-0232 Journal Article).

Abstract | BibTeX | Tags: *Chromatography, &, Acyl/chemistry, Amino, Animals, Asn/chemistry, Cells, Chickens, Cultured, derivatives/*analysis, Experimental, Gov't, Hepatocytes/chemistry, high, KEITH,