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1285 entries « 2 of 26 »

2021

Cubi R, Bouhedda F, Collot M, Klymchenko A S, Ryckelynck M

microIVC-Useq: a microfluidic-assisted high-throughput functionnal screening in tandem with next generation sequencing and artificial neural network to rapidly characterize RNA molecules Journal Article

In: Rna, vol. 27, no. 7, pp. 841-853, 2021, ISBN: 33952671, (1469-9001 (Electronic) 1355-8382 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Bioinformatics, droplet-based microfluidics, high-throughput screening, light-up RNA aptamer, RNA engineering, RYCKELYNCK, Unité ARN

Montavon T C, Baldaccini M, Lefevre M, Girardi E, Chane-Woon-Ming B, Messmer M, Hammann P, Chicher J, Pfeffer S

Human DICER helicase domain recruits PKR and modulates its antiviral activity Journal Article

In: PLoS Pathog, vol. 17, no. 5, pp. e1009549, 2021, ISBN: 33984068, (1553-7374 (Electronic) 1553-7366 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: PFEFFER, PPSE, Unité ARN

Alghoul F, Laure S, Eriani G, Martin F

Translation inhibitory elements from Hoxa3 and Hoxa11 mRNAs use uORFs for translation inhibition Journal Article

In: Elife, vol. 10, 2021, ISBN: 34076576, (2050-084X (Electronic) 2050-084X (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ERIANI, Unité ARN

Ramos-Morales E, Bayam E, Del-Pozo-Rodriguez J, Salinas-Giege T, Marek M, Tilly P, Wolff P, Troesch E, Ennifar E, Drouard L, Godin J D, Romier C

The structure of the mouse ADAT2/ADAT3 complex reveals the molecular basis for mammalian tRNA wobble adenosine-to-inosine deamination Journal Article

In: Nucleic Acids Res, vol. 49, no. 11, pp. 6529-6548, 2021, ISBN: 34057470, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ARN-MS, ENNIFAR, Unité ARN

Ortet P, Fochesato S, Bitbol A F, Whitworth D E, Lalaouna D, Santaella C, Heulin T, Achouak W, Barakat M

Evolutionary history expands the range of signaling interactions in hybrid multikinase networks Journal Article

In: Sci Rep, vol. 11, no. 1, pp. 11763, 2021, ISBN: 34083699.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Himmelstoss M, Erharter K, Renard E, Ennifar E, Kreutz C, Micura R

2'-O-Trifluoromethylated RNA - a powerful modification for RNA chemistry and NMR spectroscopy Journal Article

In: Chem Sci, vol. 11, no. 41, pp. 11322-11330, 2021, ISBN: 34094374, (2041-6520 (Print) 2041-6520 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

Moya-Alvarez V, Koyembi J J, Kaye L M, Mbecko J R, Sanke-Waigana H, Djorie S G, Nyasenu Y T, Mad-Bondo D, Kongoma J B, Nakib S, Madec Y, Ulmann G, Neveux N, Sansonetti P J, Vray M, Marteyn B

Vitamin C levels in a Central-African mother-infant cohort: Does hypovitaminosis C increase the risk of enteric infections? Journal Article

In: Matern Child Nutr, pp. e13215, 2021, ISBN: 34137176, (1740-8709 (Electronic) 1740-8695 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: MARTEYN, Unité ARN

Giuliodori A M, Marzi S

Editorial: Interview With the Translational Apparatus: Stories of Intriguing Circuits and Mechanisms to Regulate Translation in Bacteria Journal Article

In: Front Microbiol, vol. 12, pp. 707354, 2021, ISBN: 34220790, (1664-302X (Print) 1664-302X (Linking) Editorial).

Links | BibTeX | Tags: ROMBY, Unité ARN

Marszalkowski M, Werner A, Feltens R, Helmecke D, Gossringer M, Westhof E, Hartmann R K

Comparative study on tertiary contacts and folding of RNase P RNAs from a psychrophilic, a mesophilic/radiation-resistant and a thermophilic bacterium Journal Article

In: Rna, 2021, ISBN: 34266994, (1469-9001 (Electronic) 1355-8382 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Unité ARN, WESTHOF

Barrientos L, Mercier N, Lalaouna D, Caldelari I

Assembling the Current Pieces: The Puzzle of RNA-Mediated Regulation in Staphylococcus aureus Journal Article

In: Front Microbiol, vol. 12, pp. 706690, 2021, ISBN: 34367109, (1664-302X (Print) 1664-302X (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Mediati D G, Lalaouna D, Tree J J

Burning the Candle at Both Ends: Have Exoribonucleases Driven Divergence of Regulatory RNA Mechanisms in Bacteria? Journal Article

In: mBio, pp. e0104121, 2021, ISBN: 34372700, (2150-7511 (Electronic) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Thepaut M, Campos-Silva R, Renard E, Barloy-Hubler F, Ennifar E, Boujard D, Gillet R

Safe and easy in vitro evaluation of tmRNA-SmpB-mediated trans-translation from ESKAPE pathogenic bacteria Journal Article

In: Rna, 2021, ISBN: 34353925, (1469-9001 (Electronic) 1355-8382 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

Vargas-Rodriguez O, Badran A H, Hoffman K S, Chen M, Crnkovic A, Ding Y, Krieger J R, Westhof E, Soll D, Melnikov S

Bacterial translation machinery for deliberate mistranslation of the genetic code Journal Article

In: Proc Natl Acad Sci U S A, vol. 118, no. 35, 2021, ISBN: 34413202, (1091-6490 (Electronic) 0027-8424 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Unité ARN

Vilimova M, Contrant M, Randrianjafy R, Dumas P, Elbasani E, Ojala P M, Pfeffer S, Fender A

Cis regulation within a cluster of viral microRNAs Journal Article

In: Nucleic Acids Res, 2021, ISBN: 34417603, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: PFEFFER, Unité ARN

Antoine L, Bahena-Ceron R, Bunwaree H Devi, Gobry M, Loegler V, Romby P, Marzi S

RNA Modifications in Pathogenic Bacteria: Impact on Host Adaptation and Virulence Journal Article

In: Genes (Basel), vol. 12, no. 8, 2021, ISBN: 34440299, (2073-4425 (Electronic) 2073-4425 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Welker L, Paillart J C, Bernacchi S

Importance of Viral Late Domains in Budding and Release of Enveloped RNA Viruses Journal Article

In: Viruses, vol. 13, no. 8, pp. 1559, 2021, ISBN: 34452424, (1999-4915 (Electronic) 1999-4915 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: PAILLART, Unité ARN

Andre C, Veillard F, Wolff P, Lobstein A M, Compain G, Monsarrat C, Reichhart J M, Burnouf D Y, Guichard G, Wagner J E

Antibacterial activity of a dual peptide targeting the Escherichia coli sliding clamp and the ribosome Journal Article

In: RSC Chem Biol, vol. 2, no. 4, pp. 1296, 2021, ISBN: 34459830, (2633-0679 (Electronic) 2633-0679 (Linking) Published Erratum).

Abstract | Links | BibTeX | Tags: ARN-MS, ENNIFAR, reichhart, Unité ARN

Cela M, Theobald-Dietrich A, Rudinger-Thirion J, Wolff P, Geslain R, Frugier M

Identification of host tRNAs preferentially recognized by the Plasmodium surface protein tRip Journal Article

In: Nucleic Acids Res, 2021, ISBN: 34530443, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ARN-MS, FRUGIER, Unité ARN

Gilmer O, Quignon E, Jousset A C, Paillart J C, Marquet R, Vivet-Boudou V

Chemical and Enzymatic Probing of Viral RNAs: From Infancy to Maturity and Beyond Journal Article

In: Viruses, vol. 13, no. 10, pp. 1894, 2021.

Abstract | Links | BibTeX | Tags: Capillary electrophoresis, chemical probe, enzymatic probe, high-throughput sequencing, MARQUET, mutational profiling, PAILLART, RNA, SHAPE, structure, Unité ARN

Lalaouna D., Prévost K., Park S., Chénard T., Bouchard M - P., Caron M - P., Vanderpool C. K., Fei J., Massé E.

Binding of the RNA Chaperone Hfq on Target mRNAs Promotes the Small RNA RyhB-Induced Degradation in Escherichia coli Journal Article

In: Non-Coding RNA, vol. 7, no. 4, pp. 64, 2021.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Singh G., Pereira D., Baudrey S., Hoffmann E., Ryckelynck M., Asnacios A., Chaboute M. E.

Real-time tracking of root hair nucleus morphodynamics using a microfluidic approach Journal Article

In: Plant J, vol. 108, iss. 2, pp. 303-313, 2021, ISBN: 34562320, (1365-313X (Electronic) 0960-7412 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: RYCKELYNCK, Unité ARN

Wijn R. De, Rollet K., G.M.Ernst F., Wellner K., Betat H., Mörl M., Sauter M.

CCA-addition in the cold: Structural characterization of the psychrophilic CCA-adding enzyme from the permafrost bacterium Planococcus halocryophilus Journal Article

In: Computational and Structural Biotechnology Journal, vol. 19, pp. 5845-5855, 2021, ISBN: ISBN/2001-0370.

Abstract | Links | BibTeX | Tags: CCA-adding enzyme, Cold adaptation, FRUGIER, Psychrophilic protein, Psychrophilic RNA polymerase, SAXS, tRNA, Unité ARN, X-ray crystallography

Mrazikova K., Sponer J., Mlynsky V., Auffinger P., Kruse H.

Short-Range Imbalances in the AMBER Lennard-Jones Potential for (Deoxy)Ribose.Nucleobase Lone-Pair.pi Contacts in Nucleic Acids Journal Article

In: J Chem Inf Model, vol. 61, no. 11, pp. 5644-5657, 2021, ISBN: 34738826, (1549-960X (Electronic) 1549-9596 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

Chan D. L., Rudinger-Thirion J., Frugier M., Riley L. G., Ho G., Kothur K., Mohammad S. S.

A case of QARS1 associated epileptic encephalopathy and review of epilepsy in aminoacyl-tRNA synthetase disorders Journal Article

In: Brain Dev, 2021, ISBN: 34774383, (1872-7131 (Electronic) 0387-7604 (Linking) Case Reports).

Abstract | Links | BibTeX | Tags: FRUGIER, Unité ARN

Carrascoza F., Antczak M., Miao Z., Westhof E., Szachniuk M.

Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions Journal Article

In: Rna, 2021, ISBN: 34819324, (1469-9001 (Electronic) 1355-8382 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Unité ARN

Monsarrat C., Compain G., Andre C., Engilberge S., Martiel I., Olieric V., Wolff P., Brillet K., Landolfo M., da Veiga C. Silva, Wagner J., Guichard G., Burnouf D. Y.

Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp Journal Article

In: J Med Chem, 2021, ISBN: 34806883, (1520-4804 (Electronic) 0022-2623 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ARN-MS, ENNIFAR, Unité ARN

Lyonnais S., Sadiq S. K., Lorca-Oro C., Dufau L., Nieto-Marquez S., Escriba T., Gabrielli N., Tan X., Ouizougun-Oubari M., Okoronkwo J., Reboud-Ravaux M., Gatell J. M., Marquet R., Paillart J. C., Meyerhans A., Tisne C., Gorelick R. J., Mirambeau G.

The HIV-1 Nucleocapsid Regulates Its Own Condensation by Phase-Separated Activity-Enhancing Sequestration of the Viral Protease during Maturation Journal Article

In: Viruses, vol. 13, no. 11, 2021, ISBN: 34835118, (1999-4915 (Electronic) 1999-4915 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Rocchi C., Louvat C., Miele A., Batisse J., Guillon C., Ballut L., Lener D., Negroni M., Ruff M., Gouet P., Fiorini F.

The HIV-1 Integrase C-Terminal domain induces TAR RNA structural changes promoting Tat binding Journal Article

In: 2021.

Abstract | Links | BibTeX | Tags: NEGRONI, Unité ARN

Baldaccini M., Pfeffer S.

Untangling the roles of RNA helicases in antiviral innate immunity Journal Article

In: PLoS Pathog, vol. 17, no. 12, pp. e1010072, 2021, ISBN: 34882751, (1553-7374 (Electronic) 1553-7366 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: PFEFFER, Unité ARN

Belinite M., Khusainov I., Soufari H., Marzi S., Romby P., Yusupov M., Hashem Y.

Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus Journal Article

In: Front Mol Biosci, vol. 8, pp. 738752, 2021, ISBN: 34869582, (2296-889X (Print) 2296-889X (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Bouhedda F., Ryckelynck M.

Compartmentalization-based technologies for in vitro selection and evolution of ribozymes and light-up RNA aptamers Book Chapter

In: & B. Masquida S. Müller, W. Winkler (Ed.): Ribozymes, vol. 28, pp. 721-738, John Wiley & Sons, Ltd, 2021.

Abstract | Links | BibTeX | Tags: catalytic RNAs, Droplet microfluidics, fluorescence, in vitro evolution, In vitro selection, light-up RNA aptamers, ribozymes, RYCKELYNCK, screening, Unité ARN

2020

Thomès L, Lescure A

Mosaic evolution of the phosphopantothenate biosynthesis pathway in bacteria and archaea Journal Article

In: Genome Biology and Evolution, vol. 13, no. 2, pp. evaa262, 2020.

Abstract | Links | BibTeX | Tags: Candidatus poribacteria, Coenzyme A, LESCURE, phosphopantothenate pathway, Unité ARN

Abaeva I S, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova T V, Hashem Y, Hellen C U T

The Halastavi árva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism Journal Article

In: Cell Reports, vol. 33, no. 10, pp. 108476, 2020.

Abstract | Links | BibTeX | Tags: Cricket paralysis virus, Dicistrovirus, ENNIFAR, Halastavi árva virus; IRES, intergenic region, internal ribosomal entry site, pseudoknot, Ribosome, SERBP1, SERPINE1 mRNA binding protein 1, Unité ARN

Tidu A, Janvier A, Schaeffer L, Sosnowski P, Kuhn L, Hammann P, Westhof E, Eriani G, Martin F

The viral protein NSP1 acts as a ribosome gatekeeper for shutting down host translation and fostering SARS-CoV-2 translation Journal Article

In: RNA, vol. 27, no. 3, pp. 253-264, 2020.

Abstract | Links | BibTeX | Tags: ERIANI, PPSE, Unité ARN

Auffinger P, Ennifar E, D'Ascenzo L

Deflating the RNA Mg 2+ bubble. Stereochemistry to the rescue! Journal Article

In: RNA, vol. 27, no. 3, pp. 243-252, 2020.

Abstract | Links | BibTeX | Tags: cryo-EM, ENNIFAR, ionic atmosphere, solvent, Unité ARN, validation, X-Ray

Hennig O, Philipp S, Bonin S, Rollet K, Kolberg T, Jühling T, Betat H, Sauter C, Mörl M

Adaptation of the Romanomermis culicivorax CCA-Adding Enzyme to Miniaturized Armless tRNA Substrates Journal Article

In: International Journal of Molecular Sciences, vol. 21, no. 23, pp. E9047, 2020.

Abstract | Links | BibTeX | Tags: CCA-adding enzyme, co-evolution, evolutionary plasticity, FRUGIER, minimalized armless tRNAs, tRNA nucleotidyltransferase, Unité ARN

Hayoun K, Geersens E, Laczny C C, Halder R, Sánchez C Lázaro, Manna A, Bringel F, Ryckelynck M, Muller P Wilmesand E E L, Alpha-Bazin B, Armengaud J, Vuilleumier S

Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics Journal Article

In: Microorganisms, vol. 8, no. 12, pp. E1876, 2020.

Abstract | Links | BibTeX | Tags: dcm genes, dehalogenation, dichloromethane, differential proteomics, genome sequencing, Hyphomicrobium, Nanopore, pan-proteomics, RYCKELYNCK, Unité ARN

Bernacchi S

Special Issue "Function and Structure of Viral Ribonucleoproteins Complexes" Journal Article

In: Viruses, vol. 12, no. 12, pp. E1355, 2020.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Li B, Cao Y, Westhof E, Miao Z

Advances in RNA 3D Structure Modeling Using Experimental Data Journal Article

In: Front Genet ., vol. 11, no. 574485, 2020.

Abstract | Links | BibTeX | Tags: 3D shape, chemical probing, RNA structure, RNA-puzzles, structure prediction, Unité ARN, WESTHOF

Duvergé A, Negroni M

Pseudotyping Lentiviral Vectors: When the Clothes Make the Virus Journal Article

In: Viruses, vol. 12, no. 11, pp. 1311, 2020.

Abstract | Links | BibTeX | Tags: envelope proteins, gene therapy, lentiviral vectors, NEGRONI, pseudotyping, Unité ARN

Ali L M, Pitchai F N, Vivet-Boudou V, Chameettachal A, Jabeen A, Pillai V N, Mustafa F, Marquet R, Rizvi T A

Role of Purine-Rich Regions in Mason-Pfizer Monkey Virus (MPMV) Genomic RNA Packaging and Propagation Journal Article

In: Frontiers in Microbiology, no. 11, pp. 595410, 2020.

Abstract | Links | BibTeX | Tags: base paired purines, MARQUET, Mason-Pfizer monkey virus, PAILLART, retroviruses, RNA packaging, RNA secondary structure, RNA-Gag interaction, SHAPE, single-stranded purines, Unité ARN

Abel S, Marchi M, Solier J, Finet S, Brillet K, Bonneté F

Structural insights into the membrane receptor ShuA in DDM micelles and in a model of gram-negative bacteria outer membrane as seen by SAXS and MD simulations Journal Article

In: Biochim Biophys Acta Biomembr, vol. in press, 2020.

Abstract | Links | BibTeX | Tags: DDM, ENNIFAR, Membrane transporter ShuA, Molecular dynamics simulations, Outer membrane model, SEC-MALLS, SEC-SAXS, Unité ARN

Petitjean O, Girardi E, Ngondon RP, Lupashin V, Pfeffer S

Genome-Wide CRISPR-Cas9 Screen Reveals the Importance of the Heparan Sulfate Pathway and the Conserved Oligomeric Golgi Complex for Synthetic Double-Stranded RNA Uptake and Sindbis Virus Infection Journal Article

In: mSphere, vol. 5, no. 6, pp. e00914-20, 2020.

Abstract | Links | BibTeX | Tags: complex oligomeric Golgi complex, CRISPR-Cas9 screen, double-stranded RNA, heparan-sulfate, PFEFFER, Transfection, Unité ARN, virus

Despons L, Martin F

How Many Messenger RNAs Can Be Translated by the START Mechanism? Journal Article

In: International Journal of Molecular Sciences, vol. 21, no. 21, pp. 8373, 2020.

Abstract | Links | BibTeX | Tags: ERIANI, LESCURE, mRNA, Ribosome, secondary structures, START, translation initiation, Unité ARN

Wolff P, Villette C, Zumsteg J, Heintz D, Antoine L, Chane-Woon-Ming B, Droogmans L, Grosjean H, Westhof E

Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea Journal Article

In: RNA, vol. 26, no. 12, pp. 1957-1975, 2020.

Abstract | Links | BibTeX | Tags: (hyper)thermophiles Archaea mass spectrometry modifications tRNA, ARN-MS, ENNIFAR, Unité ARN, WESTHOF

Westhof E, Liang S, Tong X, Ding X, Zheng L, Dai F

Unusual tertiary pairs in eukaryotic tRNA-Ala Journal Article

In: RNA, vol. 26, no. 11, pp. 1519-1529, 2020.

Abstract | Links | BibTeX | Tags: Ala Gly insects mammals tRNA, Unité ARN, WESTHOF

Ryckelynck M

Development and Applications of Fluorogen/Light-Up RNA Aptamer Pairs for RNA Detection and More Book Chapter

In: vol. 2166, pp. 73-102, Methods in Molecular Biology, 2020.

Abstract | Links | BibTeX | Tags: aptamer, biosensing, Engineering, fluorogen, Functional screening, Live-cell imaging, RNA, RYCKELYNCK, SELEX, Unité ARN

Lalaouna D, Romby P

Manganese: the battle of the two armies Journal Article

In: Project Repository Journal, 2020.

Links | BibTeX | Tags: ROMBY, Unité ARN

Wolff P, Ennifar E

Native Electrospray Ionization Mass Spectrometry of RNA-Ligand Complexes Book Chapter

In: Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, vol. 2113, pp. 111-118, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006311.

Abstract | Links | BibTeX | Tags: ARN-MS, ENNIFAR, Native mass spectrometry RNA, Unité ARN

Werner S, Schmidt L, Marchand V, Kemmer T, Falschlunger C, Sednev M V, Bec G, Ennifar E, Höbartner C, Micura R, Motorin Y, Hildebrandt A, Helm M

Machine Learning of Reverse Transcription Signatures of Variegated Polymerases Allows Mapping and Discrimination of Methylated Purines in Limited Transcriptomes Journal Article

In: Nucleic Acids Res, vol. 48, no. 7, pp. 3734-3746, 2020, ISBN: 32095818.

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

1285 entries « 2 of 26 »