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2001

Sauter C, Otalora F, Gavira J A, Vidal O, Giege R, Garcia-Ruiz J M

Structure of tetragonal hen egg-white lysozyme at 0.94 A from crystals grown by the counter-diffusion method Journal Article

In: Acta Crystallogr D Biol Crystallogr, vol. 57, no. Pt 8, pp. 1119-1126, 2001, ISBN: 11468395, (0907-4449 Journal Article).

Abstract | Links | BibTeX | Tags: Amino Acids/chemistry Animals Anions/chemistry Binding Sites Cations/chemistry Chickens Crystallization Crystallography, Molecular Muramidase/*chemistry Protein Conformation Protein Structure, Non-U.S. Gov't, SAUTER, Tertiary Support, Unité ARN, X-Ray Egg White/analysis Models

2000

Tzou P, Ohresser S, Ferrandon Dominique, Capovilla Maria, Reichhart Jean-Marc, Lemaitre Bruno, Hoffmann Jules A, Imler Jean-Luc

Tissue-specific inducible expression of antimicrobial peptide genes in Drosophila surface epithelia Journal Article

In: Immunity, vol. 13, pp. 737–48., 2000, ISSN: 1074-7613.

Abstract | BibTeX | Tags: *Genes, Animal, Anti-Infective Agents/*immunology/metabolism, Drosophila/genetics/*immunology, ferrandon, Gene Expression Regulation/*immunology, Genes, Glycoside Hydrolases/immunology, hoffmann, Human, imler, Insect, Insect Proteins/genetics/immunology, M3i, Non-U.S. Gov't, Organ Specificity, P.H.S., reichhart, Reporter, Support, Transfection, U.S. Gov't

Rihn B H, Bottin M C, Coulais C, Rouget R, Monhoven N, Baranowski W, Edorh A, Keith G

Genotoxicity of 3-methylcholanthrene in liver of transgenic big Blue mice Journal Article

In: Environ Mol Mutagen, vol. 36, no. 4, pp. 266-73, 2000, ISBN: 11152559, (0893-6692 Journal Article).

Abstract | Links | BibTeX | Tags: Animals Bacterial Proteins/genetics Base Sequence Cell Division/drug effects DNA Adducts DNA Primers *Escherichia coli Proteins Liver/cytology/*drug effects Methylcholanthrene/*toxicity Mice Mice, Inbred C57BL Mice, Non-U.S. Gov't, Transgenic Mutagens/*toxicity Mutation Organ Weight Repressor Proteins/genetics Support

Westhof E, Fritsch V

RNA folding: beyond Watson-Crick pairs Journal Article

In: Structure, vol. 8, no. 3, pp. R55-65, 2000, ISBN: 10745012, (0969-2126 Journal Article Review Review, Tutorial).

Abstract | Links | BibTeX | Tags: Base Pairing Human Hydrogen Bonding *Nucleic Acid Conformation RNA/*chemistry Support, Non-U.S. Gov't, Unité ARN

Rihn B H, Bottin M C, Coulais C, Rouget R, Monhoven N, Baranowski W, Edorh A, Keith G

Genotoxicity of 3-methylcholanthrene in liver of transgenic big Blue mice Journal Article

In: Environ Mol Mutagen, vol. 36, no. 4, pp. 266-273, 2000, ISBN: 11152559, (0893-6692 Journal Article).

Abstract | Links | BibTeX | Tags: Animals Bacterial Proteins/genetics Base Sequence Cell Division/drug effects DNA Adducts DNA Primers *Escherichia coli Proteins Liver/cytology/*drug effects Methylcholanthrene/*toxicity Mice Mice, Inbred C57BL Mice, Non-U.S. Gov't, Transgenic Mutagens/*toxicity Mutation Organ Weight Repressor Proteins/genetics Support, Unité ARN

Rihn B, Coulais C, Kauffer E, Bottin M C, Martin P, Yvon F, Vigneron J C, Binet S, Monhoven N, Steiblen G, Keith G

Inhaled crocidolite mutagenicity in lung DNA Journal Article

In: Environ Health Perspect, vol. 108, no. 4, pp. 341-346, 2000, ISBN: 10753093, (0091-6765 Journal Article).

Abstract | Links | BibTeX | Tags: Air Pollutants/*adverse effects Animals Asbestos, Alveolar/physiology Male Mice Mice, Crocidolite/administration & dosage/*adverse effects DNA Adducts/*genetics DNA Damage/*genetics Inhalation Exposure Lung/*drug effects/pathology Macrophages, Non-U.S. Gov't, Transgenic Mutagenicity Tests Support, Unité ARN

Masquida B, Westhof E

On the wobble GoU and related pairs Journal Article

In: RNA, vol. 6, no. 1, pp. 9-15, 2000, ISBN: 10668794, (1355-8382 Journal Article Review Review, Tutorial).

Abstract | Links | BibTeX | Tags: *Base Pairing Models, Molecular RNA/*chemistry Support, Non-U.S. Gov't, Unité ARN

Lodmell J S, Ehresmann C, Ehresmann B, Marquet R

Convergence of natural and artificial evolution on an RNA loop-loop interaction: the HIV-1 dimerization initiation site Journal Article

In: RNA, vol. 6, no. 9, pp. 1267-1276, 2000, ISBN: 10999604, (1355-8382 Journal Article).

Abstract | Links | BibTeX | Tags: Codon, Initiator Dimerization Directed Molecular Evolution Evolution, MARQUET, Molecular HIV-1/*chemistry/genetics Nucleic Acid Conformation RNA, Non-U.S. Gov't, Unité ARN, Viral/*chemistry/metabolism Support

Kolb F A, Malmgren C, Westhof E, Ehresmann C, Ehresmann B, Wagner E G, Romby P

An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment Journal Article

In: RNA, vol. 6, no. 3, pp. 311-324, 2000, ISBN: 10744017, (1355-8382 Journal Article).

Abstract | Links | BibTeX | Tags: Antisense/*metabolism RNA, Bacterial Proteins/*metabolism Base Pairing Base Sequence Binding Sites Cations, Divalent Computer Simulation Metals, Double-Stranded/metabolism RNA, Heavy/metabolism Models, Messenger/metabolism RNA, Molecular Molecular Sequence Data *Nucleic Acid Conformation RNA Stability RNA, Non-U.S. Gov't, ROMBY, Spliced Leader/metabolism Support, Unité ARN

Kolb F A, Engdahl H M, Slagter-Jager J G, Ehresmann B, Ehresmann C, Westhof E, Wagner E G, Romby P

Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA Journal Article

In: EMBO J, vol. 19, no. 21, pp. 5905-5915, 2000, ISBN: 11060041, (0261-4189 Journal Article).

Abstract | Links | BibTeX | Tags: Antisense/*chemistry/*genetics/metabolism RNA, Bacterial Models, Bacterial Proteins/genetics Base Sequence Binding, Bacterial/chemistry/genetics/metabolism Support, Competitive DNA Primers/genetics Escherichia coli/chemistry/genetics/metabolism Genes, Molecular Molecular Sequence Data Mutation Nucleic Acid Conformation RNA, Non-U.S. Gov't, ROMBY, Unité ARN

Giege R, Felden B, Zenkova M A, Sil'nikov V N, Vlassov V V

Cleavage of RNA with synthetic ribonuclease mimics Journal Article

In: Methods Enzymol, vol. 318, pp. 147-165, 2000, ISBN: 10889986, (0076-6879 Journal Article).

Links | BibTeX | Tags: Asp/chemistry Ribonuclease, Base Sequence Electrophoresis, Chemical Molecular Sequence Data Nucleic Acid Conformation Nucleic Acid Hybridization Phosphorylation Plasmids/metabolism RNA/chemistry/*metabolism RNA, Non-U.S. Gov't, Pancreatic/chemistry/pharmacology Ribonucleases/*chemistry/pharmacology Saccharomyces cerevisiae/genetics Spectrophotometry Support, Polyacrylamide Gel Genetic Techniques Hydrolysis Imidazoles/pharmacology Models, Transfer, Unité ARN

Geslain R, Martin F, Delagoutte B, Cavarelli J, Gangloff J, Eriani G

In vivo selection of lethal mutations reveals two functional domains in arginyl-tRNA synthetase Journal Article

In: RNA, vol. 6, no. 3, pp. 434-448, 2000, ISBN: 10744027, (1355-8382 Journal Article).

Abstract | Links | BibTeX | Tags: Arginine-tRNA Ligase/chemistry/*genetics Cloning, ERIANI, Fungal Genes, Fungal/genetics Kinetics Models, Lethal/*genetics Genes, Molecular Fungal Proteins/biosynthesis/genetics Gene Expression Regulation, Molecular Mutation/*genetics Peptide Fragments/chemistry/genetics Saccharomyces cerevisiae/enzymology/genetics Support, Non-U.S. Gov't, Structural, Unité ARN

Frugier M, Moulinier L, Giege R

A domain in the N-terminal extension of class IIb eukaryotic aminoacyl-tRNA synthetases is important for tRNA binding Journal Article

In: EMBO J, vol. 19, no. 10, pp. 2371-2380, 2000, ISBN: 10811628, (0261-4189 Journal Article).

Abstract | Links | BibTeX | Tags: Amino Acid Sequence Amino Acyl-tRNA Ligases/chemistry/*metabolism Aspartate-tRNA Ligase/chemistry/metabolism Molecular Sequence Data RNA, ERIANI, FRUGIER, Fungal/metabolism RNA, Non-U.S. Gov't, Transfer/*metabolism Saccharomyces cerevisiae/*metabolism Sequence Alignment Support, Unité ARN

Fagegaltier D, Hubert N, Carbon P, Krol A

The selenocysteine insertion sequence binding protein SBP is different from the Y-box protein dbpB Journal Article

In: Biochimie, vol. 82, no. 2, pp. 117-122, 2000, ISBN: 10727766, (0300-9084 Journal Article).

Abstract | Links | BibTeX | Tags: Animals Base Sequence *CCAAT-Enhancer-Binding Proteins COS Cells Cloning, Molecular DNA-Binding Proteins/genetics/*metabolism Molecular Sequence Data Nucleic Acid Conformation RNA/metabolism RNA-Binding Proteins/genetics/*metabolism Rats Support, Non-U.S. Gov't, Unité ARN

Delagoutte B, Keith G, Moras D, Cavarelli J

Crystallization and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes Journal Article

In: Acta Crystallogr D Biol Crystallogr, vol. 56, no. Pt 4, pp. 492-494, 2000, ISBN: 10739930, (0907-4449 Journal Article).

Abstract | Links | BibTeX | Tags: Arg/*chemistry/isolation & purification/*metabolism Saccharomyces cerevisiae/enzymology/genetics Support, Arginine-tRNA Ligase/*chemistry/isolation & purification/*metabolism Crystallization Crystallography, Fungal/chemistry/isolation & purification/metabolism RNA, Non-U.S. Gov't, Transfer, Unité ARN, X-Ray RNA

Benito Y, Kolb F A, Romby P, Lina G, Etienne J, Vandenesch F

Probing the structure of RNAIII, the Staphylococcus aureus agr regulatory RNA, and identification of the RNA domain involved in repression of protein A expression Journal Article

In: RNA, vol. 6, no. 5, pp. 668-679, 2000, ISBN: 10836788, (1355-8382 Journal Article).

Abstract | Links | BibTeX | Tags: Antisense/*chemistry/genetics/metabolism RNA, Bacterial Models, Bacterial/*chemistry/genetics/metabolism Ribosomes/metabolism Staphylococcal Protein A/*genetics Staphylococcus aureus/*chemistry/*genetics/metabolism Support, Base Sequence Binding Sites/genetics DNA Primers/genetics Escherichia coli/metabolism Gene Expression Genes, Molecular Molecular Sequence Data Nucleic Acid Conformation RNA, Non-U.S. Gov't, ROMBY, Unité ARN

Benas P, Bec G, Keith G, Marquet R, Ehresmann C, Ehresmann B, Dumas P

The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop Journal Article

In: RNA, vol. 6, no. 10, pp. 1347-1355, 2000, ISBN: 11073212, (1355-8382 Journal Article).

Abstract | Links | BibTeX | Tags: Animals Anticodon/*chemistry/genetics Base Sequence Cattle Chickens/*genetics Crystallography, Biomolecular *Nucleic Acid Conformation RNA/*chemistry/genetics RNA, Lys/*chemistry/genetics Rabbits Support, MARQUET, Molecular Molecular Sequence Data Nuclear Magnetic Resonance, Non-U.S. Gov't, Transfer, Unité ARN, X-Ray HIV-1/*genetics Models

1999

Yusupov M, Walter P, Marquet R, Ehresmann C, Ehresmann B, Dumas P

Crystallization of the dimerization-initiation site of genomic HIV-1 RNA: preliminary crystallographic results Journal Article

In: Acta Crystallogr D Biol Crystallogr, vol. 55, no. Pt 1, pp. 281-284, 1999, ISBN: 10089425, (0907-4449 Journal Article).

Abstract | Links | BibTeX | Tags: Base Sequence Binding Sites Crystallization Crystallography, MARQUET, Non-U.S. Gov't, Unité ARN, Viral HIV-1/*chemistry/genetics Human Molecular Sequence Data Nucleic Acid Conformation RNA, Viral/*chemistry/genetics/isolation & purification Solutions Support, X-Ray Dimerization Genome

Wolfson A D, Khvorova A M, Sauter C, Florentz C, Giege R

Mimics of yeast tRNAAsp and their recognition by aspartyl-tRNA synthetase Journal Article

In: Biochemistry, vol. 38, no. 37, pp. 11926-11932, 1999, ISBN: 10508395, (0006-2960 Journal Article).

Abstract | Links | BibTeX | Tags: Acylation Aspartate-tRNA Ligase/*chemistry/metabolism Base Sequence Catalysis Cloning, Asp/*chemistry/genetics/metabolism Saccharomyces cerevisiae Support, FLORENTZ, Molecular Enzyme Activation/genetics Genetic Engineering Molecular Mimicry Molecular Sequence Data Mutagenesis, Non-U.S. Gov't, SAUTER, Site-Directed Plasmids/chemical synthesis RNA, Transfer, Unité ARN

Wilhelm M, Heyman T, Boutabout M, Wilhelm F X

A sequence immediately upstream of the plus-strand primer is essential for plus-strand DNA synthesis of the Saccharomyces cerevisiae Ty1 retrotransposon Journal Article

In: Nucleic Acids Res, vol. 27, no. 23, pp. 4547-4552, 1999, ISBN: 10556309, (0305-1048 Journal Article).

Abstract | Links | BibTeX | Tags: Base Sequence *DNA Primers DNA, Fungal/*biosynthesis Mutation Response Elements *Retroelements Saccharomyces cerevisiae/*genetics Support, Non-U.S. Gov't, Unité ARN

Walter F, Vicens Q, Westhof E

Aminoglycoside-RNA interactions Journal Article

In: Curr Opin Chem Biol, vol. 3, no. 6, pp. 694-704, 1999, ISBN: 10600721, (1367-5931 Journal Article Review Review, Tutorial).

Abstract | Links | BibTeX | Tags: Aminoglycosides Anti-Bacterial Agents/metabolism/*pharmacology Carbohydrate Sequence Molecular Sequence Data RNA/chemistry/*drug effects/metabolism RNA, Catalytic/antagonists & inhibitors/drug effects Support, Non-U.S. Gov't, Unité ARN

Sauter C, Lorber B, Kern D, Cavarelli J, Moras D, Giege R

Crystallogenesis studies on yeast aspartyl-tRNA synthetase: use of phase diagram to improve crystal quality Journal Article

In: Acta Crystallogr D Biol Crystallogr, vol. 55, no. Pt 1, pp. 149-156, 1999, (0907-4449 Journal Article).

Abstract | Links | BibTeX | Tags: Aspartate-tRNA Ligase/*chemistry/genetics/*isolation & purification Crystallization Crystallography, Fungal Saccharomyces cerevisiae/*enzymology/genetics Sequence Deletion Solutions Support, Non-U.S. Gov't, SAUTER, Unité ARN, X-Ray Genes

Rudinger-Thirion J, Giege R

The peculiar architectural framework of tRNASec is fully recognized by yeast AspRS Journal Article

In: RNA, vol. 5, no. 4, pp. 495-502, 1999, ISBN: 10199566, (1355-8382 Journal Article).

Abstract | Links | BibTeX | Tags: Amino Acid-Specific/*genetics RNA, Amino Acyl-tRNA Ligases/*genetics/metabolism Anticodon/genetics Aspartic Acid/genetics/metabolism Base Sequence Escherichia coli/genetics Fungi/*enzymology/genetics Molecular Sequence Data Mutation Nucleic Acid Conformation RNA, Asp/genetics Selenocysteine/genetics/metabolism Support, Bacterial/genetics RNA, Non-U.S. Gov't, Transfer, Unité ARN

Petyuk V A, Zenkova M A, Giege R, Vlassov V V

Hybridization of antisense oligonucleotides with the 3'part of tRNA(Phe) Journal Article

In: FEBS Lett, vol. 444, no. 2-3, pp. 217-221, 1999, ISBN: 10050762, (0014-5793 Journal Article).

Abstract | Links | BibTeX | Tags: Antisense/*genetics RNA, Base Sequence Electrophoresis, Calf Thymus/metabolism Support, Fungal/genetics RNA, Non-U.S. Gov't, Phe/*genetics Ribonuclease H, Polyacrylamide Gel Molecular Sequence Data Nucleic Acid Conformation Nucleic Acid Hybridization/*genetics Oligodeoxyribonucleotides/genetics Oligonucleotides, Transfer, Unité ARN

Petyuk V, Zenkova M, Giege R, Vlassov V

Interaction of complementary oligonucleotides with the 3'-end of yeast tRNA(Phe) Journal Article

In: Nucleosides Nucleotides, vol. 18, no. 6-7, pp. 1459-1461, 1999, ISBN: 10474225, (0732-8311 Journal Article).

Abstract | Links | BibTeX | Tags: Non-U.S. Gov't, Nucleic Acid Conformation RNA, Phe/*chemistry Saccharomyces cerevisiae/*genetics Support, Transfer, Unité ARN

Perrin L, Romby P, Laurenti P, Berenger H, Kallenbach S, Bourbon H M, Pradel J

The Drosophila modifier of variegation modulo gene product binds specific RNA sequences at the nucleolus and interacts with DNA and chromatin in a phosphorylation-dependent manner Journal Article

In: J Biol Chem, vol. 274, no. 10, pp. 6315-6323, 1999, ISBN: 10037720, (0021-9258 Journal Article).

Abstract | Links | BibTeX | Tags: Animals Base Sequence Binding Sites/genetics Chromatin/*genetics DNA/*genetics DNA-Binding Proteins/*genetics/metabolism Drosophila/*genetics *Drosophila Proteins *Genes, Insect Insect Proteins/*genetics/metabolism Molecular Sequence Data Phosphorylation RNA/*genetics RNA-Binding Proteins/*genetics/metabolism Support, Non-U.S. Gov't, ROMBY, Unité ARN

Ennifar E, Yusupov M, Walter P, Marquet R, Ehresmann B, Ehresmann C, Dumas P

The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges Journal Article

In: Structure, vol. 7, no. 11, pp. 1439-49, 1999, ISBN: 10574792, (0969-2126 Journal Article).

Abstract | Links | BibTeX | Tags: Adenine/*chemistry Base Pair Mismatch Base Sequence Crystallography, ENNIFAR, Molecular Molecular Sequence Data *Nucleic Acid Conformation RNA, Non-U.S. Gov't, Unité ARN, Viral/*chemistry/metabolism Support, X-Ray Dimerization HIV-1/*genetics Magnesium/metabolism Magnetic Resonance Spectroscopy Manganese/metabolism Models

1997

Walczak R, Hubert N, Carbon P, Krol A

Solution structure of SECIS, the mRNA element required for eukaryotic selenocysteine insertion--interaction studies with the SECIS-binding protein SBP Journal Article

In: Biomed Environ Sci, vol. 10, no. 2-3, pp. 177-181, 1997, ISBN: 9315308, (0895-3988 Journal Article Review Review, Tutorial).

Abstract | Links | BibTeX | Tags: Animals Human Magnetic Resonance Spectroscopy Models, Chemical Nucleic Acid Conformation RNA, Messenger/*chemistry Rats Selenocysteine/*chemistry Solutions Support, Non-U.S. Gov't, Unité ARN

Sissler M, Eriani G, Martin F, Giege R, Florentz C

Mirror image alternative interaction patterns of the same tRNA with either class I arginyl-tRNA synthetase or class II aspartyl-tRNA synthetase Journal Article

In: Nucleic Acids Res, vol. 25, no. 24, pp. 4899-4906, 1997, ISBN: 9396794, (0305-1048 Journal Article).

Abstract | Links | BibTeX | Tags: Anticodon/chemistry Arginine-tRNA Ligase/classification/*metabolism Aspartate-tRNA Ligase/classification/*metabolism Base Sequence DNA Footprinting Escherichia coli Fungal Proteins/classification/*metabolism Models, Arg/chemistry/*metabolism RNA, Asp/chemistry/*metabolism Recombinant Fusion Proteins/metabolism Saccharomyces cerevisiae/metabolism Stereoisomerism Substrate Specificity Support, ERIANI, FLORENTZ, Fungal/chemistry/*metabolism RNA, Molecular Molecular Sequence Data *Nucleic Acid Conformation Protein Binding RNA, Non-U.S. Gov't, SISSLER, Transfer, Unité ARN

Senger B, Auxilien S, Englisch U, Cramer F, Fasiolo F

The modified wobble base inosine in yeast tRNAIle is a positive determinant for aminoacylation by isoleucyl-tRNA synthetase Journal Article

In: Biochemistry, vol. 36, no. 27, pp. 8269-8275, 1997, ISBN: 9204872, (0006-2960 Journal Article).

Abstract | Links | BibTeX | Tags: Acylation Anticodon Base Sequence Escherichia coli/genetics Inosine/*chemistry/metabolism Isoleucine-tRNA Ligase/*metabolism Molecular Sequence Data Nucleic Acid Conformation Pseudouridine/chemistry/metabolism RNA, Bacterial/chemistry/metabolism RNA, Fungal/chemistry/metabolism RNA, Ile/*chemistry/metabolism Saccharomyces cerevisiae/*genetics Structure-Activity Relationship Substrate Specificity Support, Non-U.S. Gov't, Transfer, Unité ARN

Schlegl J, Gegout V, Schlager B, Hentze M W, Westhof E, Ehresmann C, Ehresmann B, Romby P

Probing the structure of the regulatory region of human transferrin receptor messenger RNA and its interaction with iron regulatory protein-1 Journal Article

In: RNA, vol. 3, no. 10, pp. 1159-1172, 1997, ISBN: 9326491, (1355-8382 Journal Article).

Abstract | Links | BibTeX | Tags: Base Composition Base Sequence Binding Sites Electrophoresis, Messenger/*chemistry/metabolism RNA-Binding Proteins/*metabolism Receptors, Molecular Molecular Sequence Data Mutation *Nucleic Acid Conformation RNA, Non-U.S. Gov't, Polyacrylamide Gel Ethylnitrosourea/pharmacology Human Hydrolysis Hydroxyl Radical/metabolism Iron/metabolism Iron Regulatory Protein 1 Iron-Regulatory Proteins Iron-Sulfur Proteins/*metabolism Lead/pharmacology Models, ROMBY, Transferrin/*genetics Ribonuclease T1/metabolism Support, Unité ARN

Rudinger J, Felden B, Florentz C, Giege R

Strategy for RNA recognition by yeast histidyl-tRNA synthetase Journal Article

In: Bioorg Med Chem, vol. 5, no. 6, pp. 1001-1009, 1997, ISBN: 9222493, (0968-0896 Journal Article Review Review, Tutorial).

Abstract | Links | BibTeX | Tags: Amino Acyl/metabolism RNA, Base Sequence Histidine-tRNA Ligase/*metabolism Molecular Sequence Data RNA, FLORENTZ, Fungal/*metabolism RNA, Non-U.S. Gov't, Transfer, Unité ARN, Viral/metabolism Saccharomyces cerevisiae/*enzymology Substrate Specificity Support

Putz J, Wientges J, Sissler M, Giege R, Florentz C, Schwienhorst A

Rapid selection of aminoacyl-tRNAs based on biotinylation of alpha-NH2 group of charged amino acids Journal Article

In: Nucleic Acids Res, vol. 25, no. 9, pp. 1862-1863, 1997, ISBN: 9162902, (0305-1048 Journal Article).

Abstract | Links | BibTeX | Tags: Amino Acids/*chemistry Biotin/*chemistry Polymerase Chain Reaction RNA, Amino Acyl/chemistry/*isolation & purification Support, FLORENTZ, Non-U.S. Gov't, SISSLER, Transfer, Unité ARN

Paillart J C, Westhof E, Ehresmann C, Ehresmann B, Marquet R

Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA Journal Article

In: J Mol Biol, vol. 270, no. 1, pp. 36-49, 1997, ISBN: 9231899, (0022-2836 Journal Article).

Abstract | Links | BibTeX | Tags: Dimerization HIV-1/*genetics Kinetics Models, MARQUET, Molecular Mutagenesis, Non-U.S. Gov't, PAILLART, Site-Directed Nucleic Acid Conformation Purines/chemistry RNA, Unité ARN, Viral/*chemistry/genetics/*metabolism Support

Moine H, Nurse K, Ehresmann B, Ehresmann C, Ofengand J

Conformational analysis of Escherichia coli 30S ribosomes containing the single-base mutations G530U, U1498G, G1401C, and C1501G and the double-base mutation G1401C/C1501G Journal Article

In: Biochemistry, vol. 36, no. 44, pp. 13700-13709, 1997, ISBN: 9354641, (0006-2960 Journal Article).

Abstract | Links | BibTeX | Tags: 16S/chemical synthesis/*chemistry/genetics Ribosomes/chemistry/genetics Structure-Activity Relationship Support, Bacterial/*chemistry/genetics RNA, Base Sequence Cytosine Nucleotides/genetics Deoxyuridine Escherichia coli/genetics Guanine Nucleotides/genetics Molecular Sequence Data *Mutagenesis, Non-U.S. Gov't, Ribosomal, Site-Directed *Nucleic Acid Conformation RNA, Unité ARN

Moine H, Cachia C, Westhof E, Ehresmann B, Ehresmann C

The RNA binding site of S8 ribosomal protein of Escherichia coli: Selex and hydroxyl radical probing studies Journal Article

In: RNA, vol. 3, no. 3, pp. 255-268, 1997, ISBN: 9056763, (1355-8382 Journal Article).

Abstract | Links | BibTeX | Tags: 16S/chemistry/metabolism Ribosomal Proteins/chemistry/*metabolism Support, Autoradiography Base Sequence Binding Sites Consensus Sequence Escherichia coli Genetic Techniques Hydroxyl Radical/chemistry Models, Bacterial/*metabolism RNA, Molecular Molecular Sequence Data Nucleic Acid Conformation Phylogeny Polymerase Chain Reaction RNA, Non-U.S. Gov't, Ribosomal, Unité ARN

Masquida B, Felden B, Westhof E

Context dependent RNA-RNA recognition in a three-dimensional model of the 16S rRNA core Journal Article

In: Bioorg Med Chem, vol. 5, no. 6, pp. 1021-1035, 1997, ISBN: 9222495, (0968-0896 Journal Article).

Abstract | Links | BibTeX | Tags: 16S/*chemistry/*metabolism Ribosomal Proteins/chemistry Substrate Specificity Support, Base Sequence Escherichia coli/metabolism *Models, Molecular Molecular Sequence Data *Nucleic Acid Conformation Peptide Mapping RNA/*chemistry/*metabolism RNA, Non-U.S. Gov't, Ribosomal, Unité ARN

Malmgren C, Wagner E G, Ehresmann C, Ehresmann B, Romby P

Antisense RNA control of plasmid R1 replication. The dominant product of the antisense rna-mrna binding is not a full RNA duplex Journal Article

In: J Biol Chem, vol. 272, no. 19, pp. 12508-12512, 1997, ISBN: 9139701, (0021-9258 Journal Article).

Abstract | Links | BibTeX | Tags: Antisense/*metabolism RNA, Bacterial Proteins/genetics/metabolism Base Sequence Copper/metabolism Electrophoresis, Messenger/*metabolism Ribonuclease III Support, Non-U.S. Gov't, Polyacrylamide Gel Endoribonucleases/metabolism Escherichia coli Lead Molecular Sequence Data Nucleic Acid Conformation Plasmids/*metabolism Pseudomonas RNA, ROMBY, Unité ARN

Isel C, Ehresmann C, Keith G, Ehresmann B, Marquet R

Two step synthesis of (-) strong-stop DNA by avian and murine reverse transcriptases in vitro Journal Article

In: Nucleic Acids Res, vol. 25, no. 3, pp. 545-552, 1997, ISBN: 9016594, (0305-1048 Journal Article).

Abstract | Links | BibTeX | Tags: Animals Cattle DNA Primers DNA, Avian/*enzymology Rna RNA, MARQUET, Murine/*enzymology Mice Myeloblastosis Virus, Non-U.S. Gov't, Pro RNA, Transfer, Trp RNA-Directed DNA Polymerase/*metabolism Support, Unité ARN, Viral/*biosynthesis Leukemia Virus

Hermann T, Auffinger P, Scott W G, Westhof E

Evidence for a hydroxide ion bridging two magnesium ions at the active site of the hammerhead ribozyme Journal Article

In: Nucleic Acids Res, vol. 25, no. 17, pp. 3421-3427, 1997, ISBN: 9254698, (0305-1048 Journal Article).

Abstract | Links | BibTeX | Tags: Binding Sites Crystallization Electrochemistry Freezing Hydroxides/*chemistry Magnesium/*chemistry Models, Catalytic/*chemistry/metabolism Support, Molecular Molecular Structure Nucleic Acid Conformation RNA, Non-U.S. Gov't, Unité ARN

Earnshaw D J, Masquida B, Muller S, Sigurdsson S T, Eckstein F, Westhof E, Gait M J

Inter-domain cross-linking and molecular modelling of the hairpin ribozyme Journal Article

In: J Mol Biol, vol. 274, no. 2, pp. 197-212, 1997, ISBN: 9398527, (0022-2836 Journal Article).

Abstract | Links | BibTeX | Tags: Catalytic/*chemistry/metabolism Structure-Activity Relationship Support, Computer Simulation Cross-Linking Reagents/chemistry/metabolism Disulfides/chemistry/metabolism Kinetics Magnetic Resonance Spectroscopy Models, Molecular *Nucleic Acid Conformation Oligoribonucleotides/chemistry/isolation & purification RNA/chemistry RNA, Non-U.S. Gov't, Unité ARN

Baranovsky A G, Matushin V G, Vlassov A V, Zabara V G, Naumov V A, Giege R, Buneva V N, Nevinsky G A

DNA- and RNA-hydrolyzing antibodies from the blood of patients with various forms of viral hepatitis Journal Article

In: Biochemistry (Mosc), vol. 62, no. 12, pp. 1358-1366, 1997, ISBN: 9481869, (0006-2979 Journal Article).

Abstract | Links | BibTeX | Tags: Antibodies, Antinuclear/*blood/immunology Antibodies, Catalytic/*blood/isolation & purification Base Sequence Chromatography, Gel DNA/*metabolism Deoxyribonucleases/metabolism Electrophoresis, Human/blood/*immunology Human Hydrolysis Molecular Sequence Data Nucleic Acid Conformation RNA/chemistry/*metabolism Ribonucleases/metabolism Support, Non-U.S. Gov't, Polyacrylamide Gel Hepatitis, Unité ARN, Viral

1996

Friant S, Heyman T, Wilhelm F X, Wilhelm M

Role of RNA primers in initiation of minus-strand and plus-strand DNA synthesis of the yeast retrotransposon Ty1 Journal Article

In: Biochimie, vol. 78, no. 7, pp. 674-80, 1996, ISBN: 8955910, (0300-9084 Journal Article).

Abstract | Links | BibTeX | Tags: *DNA Replication *DNA Transposable Elements DNA, Bacterial/*metabolism Support, Complementary/metabolism Molecular Sequence Data Mutagenesis Nucleic Acid Conformation RNA/*metabolism RNA, Non-U.S. Gov't

Friant S, Heyman T, Wilhelm F X, Wilhelm M

Role of RNA primers in initiation of minus-strand and plus-strand DNA synthesis of the yeast retrotransposon Ty1 Journal Article

In: Biochimie, vol. 78, no. 7, pp. 674-80, 1996, ISBN: 8955910, (0300-9084 Journal Article).

Abstract | Links | BibTeX | Tags: *DNA Replication *DNA Transposable Elements DNA, Bacterial/*metabolism Support, Complementary/metabolism Molecular Sequence Data Mutagenesis Nucleic Acid Conformation RNA/*metabolism RNA, Non-U.S. Gov't

Yusupova G, Reinbolt J, Wakao H, Laalami S, Grunberg-Manago M, Romby P, Ehresmann B, Ehresmann C

Topography of the Escherichia coli initiation factor 2/fMet-tRNA(f)(Met) complex as studied by cross-linking Journal Article

In: Biochemistry, vol. 35, no. 9, pp. 2978-2984, 1996, ISBN: 8608135, (0006-2960 Journal Article).

Abstract | Links | BibTeX | Tags: Amino Acid Sequence Base Sequence Cisplatin/*pharmacology Cross-Linking Reagents Electrophoresis, Met/chemistry/isolation & purification/*metabolism Substrate Specificity Support, Non-U.S. Gov't, Polyacrylamide Gel Escherichia coli/drug effects/*metabolism Eukaryotic Initiation Factor-2/chemistry/isolation & purification/*metabolism Kinetics Molecular Sequence Data Nucleic Acid Conformation Peptide Fragments/chemistry/isolation & purification Protein Conformation RNA, ROMBY, Transfer, Unité ARN

Walczak R, Westhof E, Carbon P, Krol A

A novel RNA structural motif in the selenocysteine insertion element of eukaryotic selenoprotein mRNAs Journal Article

In: RNA, vol. 2, no. 4, pp. 367-379, 1996, ISBN: 8634917, (1355-8382 Journal Article).

Abstract | Links | BibTeX | Tags: Animals Base Sequence DNA Primers Glutathione Peroxidase/chemistry Human Hydroxyl Radical Models, Messenger/*chemistry Rats Selenocysteine/chemistry/*genetics Support, Molecular Molecular Probes Molecular Sequence Data Protein Conformation Protein Structure, Non-U.S. Gov't, Secondary Proteins/chemistry/*genetics RNA, Unité ARN

Skripkin E, Paillart J C, Marquet R, Blumenfeld M, Ehresmann B, Ehresmann C

Mechanisms of inhibition of in vitro dimerization of HIV type I RNA by sense and antisense oligonucleotides Journal Article

In: J Biol Chem, vol. 271, no. 46, pp. 28812-28817, 1996, ISBN: 8910525, (0021-9258 Journal Article).

Abstract | Links | BibTeX | Tags: Antisense/*pharmacology RNA, Biopolymers HIV-1/*genetics Nucleic Acid Conformation Oligonucleotides/*pharmacology Oligonucleotides, MARQUET, Non-U.S. Gov't, PAILLART, Unité ARN, Viral/*antagonists & inhibitors/chemistry Support

Skripkin E, Isel C, Marquet R, Ehresmann B, Ehresmann C

Psoralen crosslinking between human immunodeficiency virus type 1 RNA and primer tRNA3(Lys) Journal Article

In: Nucleic Acids Res, vol. 24, no. 3, pp. 509-514, 1996, ISBN: 8602365, (0305-1048 Journal Article).

Abstract | Links | BibTeX | Tags: Base Sequence Cross-Linking Reagents/*metabolism Ficusin/*metabolism HIV-1/*genetics Human Molecular Sequence Data Molecular Structure RNA, Lys/*genetics/metabolism RNA, MARQUET, Non-U.S. Gov't, Transfer, Unité ARN, Viral/*genetics/metabolism Support

Sissler M, Giege R, Florentz C

Arginine aminoacylation identity is context-dependent and ensured by alternate recognition sets in the anticodon loop of accepting tRNA transcripts Journal Article

In: EMBO J, vol. 15, no. 18, pp. 5069-5076, 1996, ISBN: 8890180, (0261-4189 Journal Article).

Abstract | Links | BibTeX | Tags: *Anticodon Arginine/*metabolism Base Sequence Kinetics Molecular Sequence Data Nucleic Acid Conformation RNA, Arg/*chemistry/metabolism RNA, Asp/chemistry/metabolism Saccharomyces cerevisiae Support, FLORENTZ, Fungal/*chemistry/metabolism RNA, Non-U.S. Gov't, SISSLER, Transfer, Unité ARN

Senger B, Fasiolo F

Yeast tRNA(Met) recognition by methionyl-tRNA synthetase requires determinants from the primary, secondary and tertiary structure: a review Journal Article

In: Biochimie, vol. 78, no. 7, pp. 597-604, 1996, ISBN: 8955903, (0300-9084 Journal Article Review Review, Tutorial).

Abstract | Links | BibTeX | Tags: Amino Acid Sequence Anticodon Methionine-tRNA Ligase/*metabolism Molecular Sequence Data Nucleic Acid Conformation Protein Structure, Met/*metabolism Structure-Activity Relationship Support, Non-U.S. Gov't, Secondary Protein Structure, Tertiary RNA, Transfer, Unité ARN

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