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1300 entries « 1 of 26 »

2023

Husser Claire, Baudrey Stéphanie, Ryckelynck Michael

High-Throughput Development and Optimization of RNA-Based Fluorogenic Biosensors of Small Molecules Using Droplet-Based Microfluidics Journal Article

In: Methods Mol Biol, vol. 2570, pp. 243–269, 2023, ISSN: 1940-6029.

Abstract | Links | BibTeX | Tags: RYCKELYNCK, Unité ARN

2022

Westhof Eric

Data, data, burning deep, in the forests of the net Journal Article

In: Biochem Biophys Res Commun, vol. 633, pp. 42-44, 2022, ISSN: 1090-2104.

Abstract | Links | BibTeX | Tags: Unité ARN, WESTHOF

Urzhumtsev Alexandre G, Urzhumtseva Ludmila M, Lunin Vladimir Y

Direct calculation of cryo-EM and crystallographic model maps for real-space refinement Journal Article

In: Acta Crystallogr D Struct Biol, vol. 78, no. Pt 12, pp. 1451–1468, 2022, ISSN: 2059-7983.

Abstract | Links | BibTeX | Tags: Unité ARN

Neyroud Anne Sophie, Rudinger-Thirion Joëlle, Frugier Magali, Riley Lisa G, Bidet Maud, Akloul Linda, Simpson Andrea, Gilot David, Christodoulou John, Ravel Célia, Sinclair Andrew H, Belaud-Rotureau Marc-Antoine, Tucker Elena J, Jaillard Sylvie

LARS2 variants can present as premature ovarian insufficiency in the absence of overt hearing loss Journal Article

In: Eur J Hum Genet, 2022, ISSN: 1476-5438.

Abstract | Links | BibTeX | Tags: FRUGIER, Unité ARN

Mráziková Klaudia, Kruse Holger, Mlýnský Vojtěch, Auffinger Pascal, Šponer Jiří

Multiscale Modeling of Phosphate···π Contacts in RNA U-Turns Exposes Differences between Quantum-Chemical and AMBER Force Field Descriptions Journal Article

In: J Chem Inf Model, 2022, ISSN: 1549-960X.

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

Xu Rui, Lou Yanyan, Tidu Antonin, Bulet Philippe, Heinekamp Thorsten, Martin Franck, Brakhage Axel, Li Zi, Liégeois Samuel, Ferrandon Dominique

The Toll pathway mediates Drosophila resilience to Aspergillus mycotoxins through specific Bomanins Journal Article

In: EMBO Rep, pp. e56036, 2022, ISSN: 1469-3178.

Abstract | Links | BibTeX | Tags: ERIANI, ferrandon, M3i, MARTIN, Unité ARN

Husser Claire, Vuilleumier Stéphane, Ryckelynck Michael

FluorMango, an RNA-Based Fluorogenic Biosensor for the Direct and Specific Detection of Fluoride Journal Article

In: Small, pp. e2205232, 2022, ISSN: 1613-6829.

Abstract | Links | BibTeX | Tags: RYCKELYNCK, Unité ARN

Belinite Margarita, Khusainov Iskander, Marzi Stefano

30S Ribosomal Subunit Purification and Its Biochemical and Cryo-EM Analysis Journal Article

In: Bio Protoc, vol. 12, no. 20, 2022, ISSN: 2331-8325.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Belinite Margarita, Khusainov Iskander, Marzi Stefano

30S Ribosomal Subunit Purification and Its Biochemical and Cryo-EM Analysis Journal Article

In: Bio Protoc, vol. 12, no. 20, 2022, ISSN: 2331-8325.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Bonaventure Boris, Rebendenne Antoine, Valadão Ana Luiza Chaves, Arnaud-Arnould Mary, Gracias Ségolène, de Gracia Francisco Garcia, McKellar Joe, Labaronne Emmanuel, Tauziet Marine, Vivet-Boudou Valérie, Bernard Eric, Briant Laurence, Gros Nathalie, Djilli Wassila, Courgnaud Valérie, Parrinello Hugues, Rialle Stéphanie, Blaise Mickaël, Lacroix Laurent, Lavigne Marc, Paillart Jean-Christophe, Ricci Emiliano P, Schulz Reiner, Jouvenet Nolwenn, Moncorgé Olivier, Goujon Caroline

The DEAD box RNA helicase DDX42 is an intrinsic inhibitor of positive-strand RNA viruses Journal Article

In: EMBO Rep, pp. e54061, 2022, ISSN: 1469-3178.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Tong Xiaoling, Han Min-Jin, Lu Kunpeng, Tai Shuaishuai, Liang Shubo, Liu Yucheng, Hu Hai, Shen Jianghong, Long Anxing, Zhan Chengyu, Ding Xin, Liu Shuo, Gao Qiang, Zhang Bili, Zhou Linli, Tan Duan, Yuan Yajie, Guo Nangkuo, Li Yan-Hong, Wu Zhangyan, Liu Lulu, Li Chunlin, Lu Yaru, Gai Tingting, Zhang Yahui, Yang Renkui, Qian Heying, Liu Yanqun, Luo Jiangwen, Zheng Lu, Lou Jinghou, Peng Yunwu, Zuo Weidong, Song Jiangbo, He Songzhen, Wu Songyuan, Zou Yunlong, Zhou Lei, Cheng Lan, Tang Yuxia, Cheng Guotao, Yuan Lianwei, He Weiming, Xu Jiabao, Fu Tao, Xiao Yang, Lei Ting, Xu Anying, Yin Ye, Wang Jian, Monteiro Antónia, Westhof Eric, Lu Cheng, Tian Zhixi, Wang Wen, Xiang Zhonghuai, Dai Fangyin

High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecological adaptation Journal Article

In: Nat Commun, vol. 13, no. 1, pp. 5619, 2022, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: Unité ARN, WESTHOF

Hayek Hassan, Eriani Gilbert, Allmang Christine

eIF3 Interacts with Selenoprotein mRNAs Journal Article

In: Biomolecules, vol. 12, no. 9, 2022, ISSN: 2218-273X.

Abstract | Links | BibTeX | Tags: ERIANI, Unité ARN

Diallo Idrissa, Ho Jeffrey, Lambert Marine, Benmoussa Abderrahim, Husseini Zeinab, Lalaouna David, Massé Eric, Provost Patrick

A tRNA-derived fragment present in E. coli OMVs regulates host cell gene expression and proliferation Journal Article

In: PLoS Pathog, vol. 18, no. 9, pp. e1010827, 2022, ISSN: 1553-7374.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Danne Camille, Michaudel Chloé, Skerniskyte Jurate, Planchais Julien, Magniez Aurélie, Agus Allison, Michel Marie-Laure, Lamas Bruno, Costa Gregory Da, Spatz Madeleine, Oeuvray Cyriane, Galbert Chloé, Poirier Maxime, Wang Yazhou, Lapière Alexia, Rolhion Nathalie, Ledent Tatiana, Pionneau Cédric, Chardonnet Solenne, Bellvert Floriant, Cahoreau Edern, Rocher Amandine, Arguello Rafael Rose, Peyssonnaux Carole, Louis Sabine, Richard Mathias L, Langella Philippe, El-Benna Jamel, Marteyn Benoit, Sokol Harry

CARD9 in neutrophils protects from colitis and controls mitochondrial metabolism and cell survival Journal Article

In: Gut, pp. in press, 2022, ISSN: 1468-3288.

Abstract | Links | BibTeX | Tags: MARTEYN, Unité ARN

Jakob Celia, Paul-Stansilaus Rithu, Schwemmle Martin, Marquet Roland, Bolte Hardin

The influenza A virus genome packaging network - complex, flexible and yet unsolved Journal Article

In: Nucleic Acids Res, pp. In press, 2022, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: MARQUET, Unité ARN

Mair Stefan, Erharter Kevin, Renard Eva, Brillet Karl, Brunner Melanie, Lusser Alexandra, Kreutz Christoph, Ennifar Eric, Micura Ronald

Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA Journal Article

In: Nucleic Acids Res, 2022, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

Vilimova Monika, Pfeffer Sébastien

Post-transcriptional regulation of polycistronic microRNAs Journal Article

In: Wiley Interdiscip Rev RNA, pp. e1749, 2022, ISSN: 1757-7012.

Abstract | Links | BibTeX | Tags: PFEFFER, Unité ARN

McKellar Stuart W, Ivanova Ivayla, Arede Pedro, Zapf Rachel L, Mercier Noémie, Chu Liang-Cui, Mediati Daniel G, Pickering Amy C, Briaud Paul, Foster Robert G, Kudla Grzegorz, Fitzgerald J Ross, Caldelari Isabelle, Carroll Ronan K, Tree Jai J, Granneman Sander

RNase III CLASH in MRSA uncovers sRNA regulatory networks coupling metabolism to toxin expression Journal Article

In: Nat Commun, vol. 13, no. 1, pp. 3560, 2022, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Roovers Martine L, Labar Geoffray, Wolff Philippe, Feller Andre, Elder Dany Van, Soin Romuald, Gueydan Cyril, Kruys Veronique, Droogmans Louis

The Bacillus subtilis open reading frame ysgA encodes the SPOUT methyltransferase RlmP forming 2'-O-methylguanosine at position 2553 in the A-loop of 23S rRNA Journal Article

In: RNA, 2022, ISSN: 1469-9001.

Abstract | Links | BibTeX | Tags: ARN-MS, ENNIFAR, Unité ARN

Libre C, Seissler T, Guerrero S, Batisse J, Verriez C, Stupfler B, Gilmer O, Cabrera-Rodriguez R, Weber M, Valenzuela-Fernandez A, Cimarelli A, Etienne L, Marquet R, Paillart J C

A Conserved uORF Regulates APOBEC3G Translation and Is Targeted by HIV-1 Vif Protein to Repress the Antiviral Factor Journal Article

In: Biomedicines, vol. 10, no. 1, pp. 13, 2022.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Desgranges E., Barrientos L., Herrgott L., Marzi S., Toledo-Arana A., Moreau K., Vandenesch F., Romby P., Caldelari I.

The 3'UTR-derived sRNA RsaG coordinates redox homeostasis and metabolism adaptation in response to glucose-6-phosphate uptake in Staphylococcus aureus Journal Article

In: Mol Microbiol, 2022, ISBN: 34783400, (1365-2958 (Electronic) 0950-382X (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Camara A., Lavanant A. C., Abe J., Desforges H. L., Alexandre Y. O., Girardi E., Igamberdieva Z., Asano K., Tanaka M., Hehlgans T., Pfeffer K., Pfeffer S., Mueller S. N., Stein J. V., Mueller C. G.

CD169(+) macrophages in lymph node and spleen critically depend on dual RANK and LTbetaR signaling Journal Article

In: Proc Natl Acad Sci U S A, vol. 119, no. 3, pp. e2108540119, 2022, ISBN: 35031565, (1091-6490 (Electronic) 0027-8424 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: PFEFFER, Team-Mueller, Unité ARN

Costa P. J. Da, Hamdane M., Buee L., Martin F.

Tau mRNA Metabolism in Neurodegenerative Diseases: A Tangle Journey Journal Article

In: Biomedicines, vol. 10, no. 2, pp. 241, 2022.

Abstract | Links | BibTeX | Tags: ERIANI, mRNA metabolism, Neurodegenerative Diseases, tau protein, Translation, Unité ARN

Gilmer O., Mailler E., Paillart J. C., Mouhand A., Tisne C., Mak J., Smyth R. P., Marquet R., Vivet-Boudou V.

Structural maturation of the HIV-1 RNA 5' untranslated region by Pr55(Gag) and its maturation products Journal Article

In: RNA Biol, vol. 19, no. 1, pp. 191-205, 2022, ISBN: 35067194, (1555-8584 (Electronic) 1547-6286 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Chan D. L., Rudinger-Thirion J., Frugier M., Riley L. G., Ho G., Kothur K., Mohammad S. S.

A case of QARS1 associated epileptic encephalopathy and review of epilepsy in aminoacyl-tRNA synthetase disorders Journal Article

In: Brain Dev, vol. 44, no. 2, pp. 142-147, 2022, ISBN: 34774383, (1872-7131 (Electronic) 0387-7604 (Linking) Case Reports).

Abstract | Links | BibTeX | Tags: FRUGIER, Unité ARN

Andre A. C., Laborde M., Marteyn B. S.

The battle for oxygen during bacterial and fungal infections Journal Article

In: Trends Microbiol, vol. S0966-842X, iss. 22, no. 00002-6, pp. in press, 2022, ISBN: 35131160, (1878-4380 (Electronic) 0966-842X (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: MARTEYN, Unité ARN

Bernacchi S.

Visualization of Retroviral Gag-Genomic RNA Cellular Interactions Leading to Genome Encapsidation and Viral Assembly: An Overview Journal Article

In: Viruses, vol. 14, no. 2, 2022, ISBN: 35215917, (1999-4915 (Electronic) 1999-4915 (Linking) Journal Article Review Research Support, Non-U.S. Gov't).

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Sosnowski P., Tidu A., Eriani G., Westhof E., Martin F.

Correlated sequence signatures are present within the genomic 5'UTR RNA and NSP1 protein in coronaviruses Journal Article

In: Rna, vol. 28, iss. 5, pp. 729-741, 2022, ISBN: 35236777, (1469-9001 (Electronic) 1355-8382 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ERIANI, MARTIN, Unité ARN, WESTHOF

Brugier A., Hafirrassou M. L., Pourcelot M., Baldaccini M., Kril V., Couture L., Kummerer B. M., Gallois-Montbrun S., Bonnet-Madin L., Vidalain P. O., Delaugerre C., Pfeffer S., Meertens L., Amara A.

RACK1 Associates with RNA-Binding Proteins Vigilin and SERBP1 to Facilitate Dengue Virus Replication Journal Article

In: J Virol, pp. e0196221, 2022, ISBN: 35266803, (1098-5514 (Electronic) 0022-538X (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: PFEFFER, Unité ARN

Westhof E., Thornlow B., Chan P. P., Lowe T. M.

Eukaryotic tRNA sequences present conserved and amino acid-specific structural signatures Journal Article

In: Nucleic Acids Res, vol. 50, iss. 5, pp. 4100-4112, 2022, ISBN: 35380696, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Unité ARN, WESTHOF

Eriani G., Martin F.

Viral and cellular translation during SARS-CoV-2 infection Journal Article

In: FEBS Open Bio, 2022, ISBN: 35429230, (2211-5463 (Electronic) 2211-5463 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: ERIANI, Unité ARN

Geraci I., Autour A., Pietruschka G., Shiian A., Borisova M., Mayer C., Ryckelynck M., Mayer G.

Fluorogenic RNA-Based Biosensor to Sense the Glycolytic Flux in Mammalian Cells Journal Article

In: ACS Chem Biol, 2022, ISBN: 35427113, (1554-8937 (Electronic) 1554-8929 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Labex, RYCKELYNCK, Unité ARN

Fam K. T., Pelletier R., Bouhedda F., Ryckelynck M., Collot M., Klymchenko A. S.

Rational Design of Self-Quenched Rhodamine Dimers as Fluorogenic Aptamer Probes for Live-Cell RNA Imaging Journal Article

In: Anal Chem, pp. in press, 2022, ISBN: 35486532, (1520-6882 (Electronic) 0003-2700 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Labex, RYCKELYNCK, Unité ARN

Geersens E., Vuilleumier S., Ryckelynck M.

Growth-Associated Droplet Shrinkage for Bacterial Quantification, Growth Monitoring, and Separation by Ultrahigh-Throughput Microfluidics Journal Article

In: ACS Omega, vol. 7, no. 14, pp. 12039-12047, 2022, ISBN: 35449964, (2470-1343 (Electronic) 2470-1343 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Labex, RYCKELYNCK, Unité ARN

Ponce J. R. Jaramillo, Kapps D., Paulus C., Chicher J., Frugier M.

Discovery of two distinct aminoacyl-tRNA synthetase complexes anchored to the Plasmodium surface tRNA import protein Journal Article

In: J Biol Chem, pp. 101987, 2022, ISBN: 35487244, (1083-351X (Electronic) 0021-9258 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: FRUGIER, Labex, PPSE, Unité ARN

Laveilhe A., Fochesato S., Lalaouna D., Heulin T., Achouak W.

Phytobeneficial traits of rhizobacteria under the control of multiple molecular dialogues Journal Article

In: Microb Biotechnol, 2022, ISBN: 35502577, (1751-7915 (Electronic) 1751-7915 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Bereiter R., Renard E., Breuker K., Kreutz C., Ennifar E., Micura R.

1-Deazaguanosine-Modified RNA: The Missing Piece for Functional RNA Atomic Mutagenesis Journal Article

In: J Am Chem Soc, pp. In press, 2022, ISBN: 35666572, (1520-5126 (Electronic) 0002-7863 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

Baudrey Stéphanie, Cubi Roger, Ryckelynck Michael

Droplet-Based Microfluidic Chip Design, Fabrication, and Use for Ultrahigh-Throughput DNA Analysis and Quantification Journal Article

In: Adv Exp Med Biol, vol. 1379, pp. 445–460, 2022, ISSN: 0065-2598.

Abstract | Links | BibTeX | Tags: RYCKELYNCK, Unité ARN

Charbonnier Mathilde, González-Espinoza Gabriela, Kehl-Fie Thomas E, Lalaouna David

Battle for Metals: Regulatory RNAs at the Front Line Journal Article

In: Front Cell Infect Microbiol, vol. 12, pp. 952948, 2022, ISSN: 2235-2988.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

2021

Vicens Q, Bochler A, Jobe A, Frank J, Hashem Y

Interaction Networks of Ribosomal Expansion Segments in Kinetoplastids Book Chapter

In: vol. 96, pp. 433-450, Subcellular Biochemistry, 2021.

Abstract | Links | BibTeX | Tags: Eukaryotic translation, Expansion segment, Kinetoplastid parasite, Ribosomal RNA, Ribosome structure, Unité ARN

Bec G, Ennifar E

switchSENSE Technology for Analysis of DNA Polymerase Kinetics Book Chapter

In: Rederstorff, M (Ed.): vol. 2247, pp. 145-153, Springer Protocols, Humana Press, New York, NY, Small Non-Coding RNAs, 2021.

Abstract | BibTeX | Tags: Biosensor, DNA polymerase, ENNIFAR, HIV reverse transcriptase, Kinetics, switchSENSE technology, Unité ARN

Lalaouna D, Fochesato S, Harir M, Ortet P, Schmitt-Kopplin P, Heulin T, Achouak W

Amplifying and Fine-Tuning Rsm sRNAs Expression and Stability to Optimize the Survival of Pseudomonas brassicacerum in Nutrient-Poor Environments Journal Article

In: Microorganisms, vol. 9, no. 2, pp. 250, 2021.

Abstract | Links | BibTeX | Tags: GacA-dependent, nutritional stress, Pseudomonas brassicacearum, ROMBY, Rsm sRNAs, sRNAs stability, Unité ARN

Li G, Eriani G, Wang E D, Zhou X L

Distinct pathogenic mechanisms of various RARS1 mutations in Pelizaeus-Merzbacher-like disease Journal Article

In: Sci China Life Sci, vol. 64, no. 10, pp. 1645-1660, 2021, ISBN: 33515434, (1869-1889 (Electronic) 1674-7305 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: aminoacyl-tRNA synthetase (aaRS), central nervous system (CNS), ERIANI, Protein Biosynthesis, translation initiation, tRNA, Unité ARN

Mercier N, Prévost K, Massé E, Romby P, Caldelari I, Lalaouna D

MS2-Affinity Purification Coupled with RNA Sequencing in Gram-Positive Bacteria Journal Article

In: J Vis Exp, pp. e61731, 2021.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Catalan-Moreno A, Cela M, Menendez-Gil P, Irurzun N, Caballero C J, Caldelari I, Toledo-Arana A

RNA thermoswitches modulate Staphylococcus aureus adaptation to ambient temperatures Journal Article

In: Nucleic Acids Res, pp. on press, 2021, ISBN: 33660769, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Pitchai F, Chameettachal A, Vivet-Boudou V, Ali L M, Pillai V N, Krishnan A, Bernacchi S, Mustafa F, R Marquet, Rizvi T A

Identification of Pr78Gag binding sites on the Mason-Pfizer monkey virus genomic RNA packaging determinants Journal Article

In: J Mol Biol, vol. 433, no. 10, pp. 166923, 2021.

Abstract | Links | BibTeX | Tags: MARQUET, Retroviruses Gag-RNA interactions Purines Footprinting hSHAPE, Unité ARN

Busienne C, Marquet R, Paillart J C, Bernacchi S

Post-Translational Modifications of Retroviral HIV-1 Gag Precursors: An Overview of Their Biological Role Journal Article

In: Int. J. Mol. Sci., vol. 22, no. 6, pp. 2871, 2021.

Abstract | Links | BibTeX | Tags: HIV-1, MARQUET, PAILLART, post-translational modifications, Pr55Gag precursor, retroviral Gag precursors, retroviral life cycle, Unité ARN

Chameettachal A, Vivet-Boudou V, Pitchai F N, N Pillai V, Ali L M, Krishnan A, Bernacchi S, Mustafa F, Marquet R, Rizvi T A

A purine loop and the primer binding site are critical for the selective encapsidation of mouse mammary tumor virus genomic RNA by Pr77Gag Journal Article

In: Nucleic Acids Res, vol. 49, no. 8, pp. 4668-4688, 2021.

BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Westhof E, Leontis N B

An RNA-centric historical narrative around the Protein Data Bank Journal Article

In: J Biol Chem, vol. 296, pp. 100555, 2021, ISBN: 33744291, (1083-351X (Electronic) 0021-9258 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: Computational Biology, Databases, modelling, Protein Data Bank, RNA, Structural biology, Unité ARN, WESTHOF

Husser C, Dentz N, Ryckelynck M

Structure-Switching RNAs: From Gene Expression Regulation to Small Molecule Detection Journal Article

In: Small Structures, vol. 2, no. 4, pp. 2000132, 2021.

Abstract | Links | BibTeX | Tags: biosensing, Gene Expression Regulation, riboswitches, RNA aptamers, RYCKELYNCK, Synthetic Biology, Unité ARN

1300 entries « 1 of 26 »