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2023

Arrivé Mathilde, Bruggeman Mathieu, Skaltsogiannis Vasileios, Coudray Léna, Quan Yi-Fat, Schelcher Cédric, Cognat Valérie, Hammann Philippe, Chicher Johana, Wolff Philippe, Gobert Anthony, Giegé Philippe

A tRNA-modifying enzyme facilitates RNase P activity in Arabidopsis nuclei Journal Article

In: Nat Plants, vol. 9, iss. 12, pp. 2031-2041, 2023, ISSN: 2055-0278.

Abstract | Links | BibTeX | Tags: ARN-MS, PPSE, Unité ARN

Silva P Malaka De, Bennett Rebecca J, Kuhn Lauriane, Ngondo Patryk, Debande Lorine, Njamkepo Elisabeth, Ho Brian, Weill François-Xavier, Marteyn Benoît S, Jenkins Claire, Baker Kate S

Escherichia coli killing by epidemiologically successful sublineages of Shigella sonnei is mediated by colicins Journal Article

In: EBioMedicine, vol. 97, pp. 104822, 2023, ISSN: 2352-3964.

Abstract | Links | BibTeX | Tags: MARTEYN, PPSE, Unité ARN

Girardi Erika, Messmer Mélanie, Lopez Paula, Fender Aurélie, Chicher Johana, Chane-Woon-Ming Béatrice, Hammann Philippe, Pfeffer Sébastien

Proteomics-based determination of double-stranded RNA interactome reveals known and new factors involved in Sindbis virus infection Journal Article

In: RNA, vol. 29, no. 3, pp. 361–375, 2023, ISSN: 1469-9001.

Abstract | Links | BibTeX | Tags: PFEFFER, PPSE, Unité ARN

Gosset-Erard Clarisse, Didierjean Mévie, Pansanel Jérome, Lechner Antony, Wolff Philippe, Kuhn Lauriane, Aubriet Frédéric, Leize-Wagner Emmanuelle, Chaimbault Patrick, François Yannis-Nicolas

Nucleos'ID: A New Search Engine Enabling the Untargeted Identification of RNA Post-transcriptional Modifications from Tandem Mass Spectrometry Analyses of Nucleosides Journal Article

In: Anal Chem, vol. 95, iss. 2, pp. 1608-1617, 2023, ISSN: 1520-6882.

Abstract | Links | BibTeX | Tags: ARN-MS, PPSE, Unité ARN

Kuhn Lauriane, Vincent Timothée, Hammann Philippe, Zuber Hélène

Exploring Protein Interactome Data with IPinquiry: Statistical Analysis and Data Visualization by Spectral Counts Journal Article

In: Methods Mol Biol, vol. 2426, pp. 243–265, 2023, ISSN: 1940-6029.

Abstract | Links | BibTeX | Tags: PPSE

2022

Girardi Erika, Messmer Melanie, Lopez Paula, Fender Aurelie, Chicher Johana, Chane-Woon-Ming Beatrice, Hammann Philippe, Pfeffer Sebastien

Proteomics-based determination of double stranded RNA interactome reveals known and new factors involved in Sindbis virus infection Journal Article

In: RNA, vol. 29, iss. 3, pp. 361-375, 2022, ISSN: 1469-9001.

Abstract | Links | BibTeX | Tags: PFEFFER, PPSE, Unité ARN

Chaignaud Pauline, Gruffaz Christelle, Borreca Adrien, Fouteau Stéphanie, Kuhn Lauriane, Masbou Jérémy, Rouy Zoé, Hammann Philippe, Imfeld Gwenaël, Roche David, Vuilleumier Stéphane

A Methylotrophic Bacterium Growing with the Antidiabetic Drug Metformin as Its Sole Carbon, Nitrogen and Energy Source Journal Article

In: Microorganisms, vol. 10, no. 11, 2022, ISSN: 2076-2607.

Abstract | Links | BibTeX | Tags: PPSE

Hemono Mickaele, Salinas-Giegé Thalia, Roignant Jeanne, Vingadassalon Audrey, Hammann Philippe, Ubrig Elodie, Ngondo Patryk, Duchêne Anne-Marie

FRIENDLY (FMT) is an RNA binding protein associated with cytosolic ribosomes at the mitochondrial surface Journal Article

In: Plant J, vol. 112, no. 2, pp. 309–321, 2022, ISSN: 1365-313X.

Abstract | Links | BibTeX | Tags: PPSE

Fritsch Sarah, Gasser Véronique, Peukert Carsten, Pinkert Lukas, Kuhn Lauriane, Perraud Quentin, Normant Vincent, Brönstrup Mark, Schalk Isabelle J

Uptake Mechanisms and Regulatory Responses to MECAM- and DOTAM-Based Artificial Siderophores and Their Antibiotic Conjugates in Journal Article

In: ACS Infect Dis, vol. 8, no. 6, pp. 1134–1146, 2022, ISSN: 2373-8227.

Abstract | Links | BibTeX | Tags: PPSE

Hacquard Thibaut, Clavel Marion, Baldrich Patricia, Lechner Esther, Pérez-Salamó Imma, Schepetilnikov Mikhail, Derrien Benoît, Dubois Marieke, Hammann Philippe, Kuhn Lauriane, Brun Danaé, Bouteiller Nathalie, Baumberger Nicolas, Vaucheret Hervé, Meyers Blake C, Genschik Pascal

The Arabidopsis F-box protein FBW2 targets AGO1 for degradation to prevent spurious loading of illegitimate small RNA Journal Article

In: Cell Rep, vol. 39, no. 2, pp. 110671, 2022, ISSN: 2211-1247.

Abstract | Links | BibTeX | Tags: PPSE

Schiaffini Marlene, Chicois Clara, Pouclet Aude, Chartier Tiphaine, Ubrig Elodie, Gobert Anthony, Zuber Hélène, Mutterer Jérôme, Chicher Johana, Kuhn Lauriane, Hammann Philippe, Gagliardi Dominique, Garcia Damien

A NYN domain protein directly interacts with DECAPPING1 and is required for phyllotactic pattern Journal Article

In: Plant Physiol, vol. 188, no. 2, pp. 1174–1188, 2022, ISSN: 1532-2548.

Abstract | Links | BibTeX | Tags: PPSE

Roche Béatrice, Garcia-Rivera Mariel A, Normant Vincent, Kuhn Lauriane, Hammann Philippe, Brönstrup Mark, Mislin Gaëtan L A, Schalk Isabelle J

A role for PchHI as the ABC transporter in iron acquisition by the siderophore pyochelin in Pseudomonas aeruginosa Journal Article

In: Environ Microbiol, vol. 24, no. 2, pp. 866–877, 2022, ISSN: 1462-2920.

Abstract | Links | BibTeX | Tags: PPSE

Perraud Quentin, Kuhn Lauriane, Fritsch Sarah, Graulier Gwenaëlle, Gasser Véronique, Normant Vincent, Hammann Philippe, Schalk Isabelle J

Opportunistic use of catecholamine neurotransmitters as siderophores to access iron by Pseudomonas aeruginosa Journal Article

In: Environ Microbiol, vol. 24, no. 2, pp. 878–893, 2022, ISSN: 1462-2920.

Abstract | Links | BibTeX | Tags: PPSE

Normant Vincent, Kuhn Lauriane, Munier Mathilde, Hammann Philippe, Mislin Gaëtan L. A., Schalk Isabelle J.

How the Presence of Hemin Affects the Expression of the Different Iron Uptake Pathways in Pseudomonas aeruginosa Cells Journal Article

In: ACS infectious diseases, vol. 8, no. 1, pp. 183–196, 2022, ISSN: 2373-8227.

Abstract | Links | BibTeX | Tags: Hemin, hemin (heme) uptake, Iron, iron homeostasis, iron uptake, outer membrane transporters, PPSE, proteomics, Pseudomonas aeruginosa, siderophore, Siderophores

Hémono Mickaële, Haller Alexandre, Chicher Johana, Duchêne Anne-Marie, Ngondo Richard Patryk

The interactome of CLUH reveals its association to SPAG5 and its co-translational proximity to mitochondrial proteins Journal Article

In: BMC Biol, vol. 20, no. 1, pp. 13, 2022, ISSN: 1741-7007.

Abstract | Links | BibTeX | Tags: PPSE

Ponce J. R. Jaramillo, Kapps D., Paulus C., Chicher J., Frugier M.

Discovery of two distinct aminoacyl-tRNA synthetase complexes anchored to the Plasmodium surface tRNA import protein Journal Article

In: J Biol Chem, vol. 298, iss. 6, pp. 101987, 2022, ISBN: 35487244, (1083-351X (Electronic) 0021-9258 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: FRUGIER, Labex, PPSE, Unité ARN

Normant Vincent, Kuhn Lauriane, Munier Mathilde, Hammann Philippe, Mislin Gaëtan L A, Schalk Isabelle J

How the Presence of Hemin Affects the Expression of the Different Iron Uptake Pathways in Cells Journal Article

In: ACS Infect Dis, vol. 8, no. 1, pp. 183–196, 2022, ISSN: 2373-8227.

Abstract | Links | BibTeX | Tags: PPSE

2021

Waltz Florent, Salinas-Giegé Thalia, Englmeier Robert, Meichel Herrade, Soufari Heddy, Kuhn Lauriane, Pfeffer Stefan, Förster Friedrich, Engel Benjamin D., Giegé Philippe, Drouard Laurence, Hashem Yaser

How to build a ribosome from RNA fragments in Chlamydomonas mitochondria Journal Article

In: Nature Communications, vol. 12, no. 1, pp. 7176, 2021, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: Chlamydomonas reinhardtii, Cryoelectron Microscopy, mitochondria, Mitochondrial Proteins, Mitochondrial Ribosomes, PPSE, Ribosomal Proteins, ribosomes, RNA

Schiaffini Marlene, Chicois Clara, Pouclet Aude, Chartier Tiphaine, Ubrig Elodie, Gobert Anthony, Zuber Hélène, Mutterer Jérôme, Chicher Johana, Kuhn Lauriane, Hammann Philippe, Gagliardi Dominique, Garcia Damien

A NYN domain protein directly interacts with DECAPPING1 and is required for phyllotactic pattern Journal Article

In: Plant Physiology, pp. kiab529, 2021, ISSN: 1532-2548.

Abstract | Links | BibTeX | Tags: PPSE

Incarbone Marco, Clavel Marion, Monsion Baptiste, Kuhn Lauriane, Scheer Hélène, Vantard Émilie, Poignavent Vianney, Dunoyer Patrice, Genschik Pascal, Ritzenthaler Christophe

Immunocapture of dsRNA-bound proteins provides insight into Tobacco rattle virus replication complexes and reveals Arabidopsis DRB2 to be a wide-spectrum antiviral effector Journal Article

In: The Plant Cell, vol. 33, no. 11, pp. 3402–3420, 2021, ISSN: 1532-298X.

Abstract | Links | BibTeX | Tags: PPSE

Roche Béatrice, Garcia-Rivera Mariel A., Normant Vincent, Kuhn Lauriane, Hammann Philippe, Brönstrup Mark, Mislin Gaëtan L. A., Schalk Isabelle J.

A role for PchHI as the ABC transporter in iron acquisition by the siderophore pyochelin in Pseudomonas aeruginosa Journal Article

In: Environmental Microbiology, 2021, ISSN: 1462-2920.

Abstract | Links | BibTeX | Tags: PPSE

Arquier Nathalie, Bjordal Marianne, Hammann Philippe, Kuhn Lauriane, Léopold Pierre

Brain adiponectin signaling controls peripheral insulin response in Drosophila Journal Article

In: Nature Communications, vol. 12, no. 1, pp. 5633, 2021, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: Adiponectin, Animals, Brain, Cell Line, Drosophila melanogaster, Drosophila Proteins, Energy Metabolism, Genetically Modified, Hemolymph, Homeostasis, Insulin, Juvenile Hormones, Larva, Neurons, PPSE, Receptors, Signal Transduction

Khong Minh-Thuong, Berl Valérie, Kuhn Lauriane, Hammann Philippe, Lepoittevin Jean-Pierre

Chemical Modifications Induced by Phthalic Anhydride, a Respiratory Sensitizer, in Reconstructed Human Epidermis: A Combined HRMAS NMR and LC-MS/MS Proteomic Approach Journal Article

In: Chemical Research in Toxicology, vol. 34, no. 9, pp. 2087–2099, 2021, ISSN: 1520-5010.

Abstract | Links | BibTeX | Tags: PPSE

Nettersheim Jo-Ann, Janel-Bintz Régine, Kuhn Lauriane, Cordonnier Agnès M.

DNA polymerase η is a substrate for calpain: a possible mechanism for pol η retention in UV-induced replication foci Journal Article

In: Journal of Cell Science, vol. 134, no. 13, pp. jcs258637, 2021, ISSN: 1477-9137.

Abstract | Links | BibTeX | Tags: calpain, Calpain protease, CAPNS1, DNA Damage, DNA damage response, DNA polymerase η, DNA Repair, DNA Replication, DNA-Directed DNA Polymerase, PPSE, Replication foci, Translesion DNA synthesis

Mancera-Martínez Eder, Dong Yihan, Makarian Joelle, Srour Ola, Thiébeauld Odon, Jamsheer Muhammed, Chicher Johana, Hammann Philippe, Schepetilnikov Mikhail, Ryabova Lyubov A.

Phosphorylation of a reinitiation supporting protein, RISP, determines its function in translation reinitiation Journal Article

In: Nucleic Acids Research, vol. 49, no. 12, pp. 6908–6924, 2021, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: Arabidopsis, Arabidopsis Proteins, Caulimovirus, Eukaryotic, Eukaryotic Initiation Factor-2B, Eukaryotic Initiation Factor-3, Large, Peptide Chain Initiation, Phosphorylation, PPSE, Ribosomal Protein S6, Ribosome Subunits, translational

Dahlet Thomas, Truss Matthias, Frede Ute, Adhami Hala Al, Bardet Anaïs F., Dumas Michael, Vallet Judith, Chicher Johana, Hammann Philippe, Kottnik Sarah, Hansen Peter, Luz Uschi, Alvarez Gonzalo, Auclair Ghislain, Hecht Jochen, Robinson Peter N., Hagemeier Christian, Weber Michael

E2F6 initiates stable epigenetic silencing of germline genes during embryonic development Journal Article

In: Nature Communications, vol. 12, no. 1, pp. 3582, 2021, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: Animals, Binding Sites, Cell Differentiation, CpG Islands, CRISPR-Cas Systems, DNA Methylation, E2F6 Transcription Factor, Embryonic Development, Epigenesis, Gene Silencing, Genetic, Germ Cells, Knockout, Mice, Mouse Embryonic Stem Cells, Polycomb Repressive Complex 1, PPSE, RNA, Small Interfering

Gasser Véronique, Kuhn Lauriane, Hubert Thibaut, Aussel Laurent, Hammann Philippe, Schalk Isabelle J.

The Esterase PfeE, the Achilles' Heel in the Battle for Iron between Pseudomonas aeruginosa and Escherichia coli Journal Article

In: International Journal of Molecular Sciences, vol. 22, no. 6, pp. 2814, 2021, ISSN: 1422-0067.

Abstract | Links | BibTeX | Tags: Carrier Proteins, co-cultures, enterobactin, Escherichia coli, Escherichia coli Proteins, Esterases, Iron, iron homeostasis, iron uptake, outer membrane transporters, PPSE, Pseudomonas aeruginosa, siderophore, TonB

Enkler Ludovic, Rinaldi Bruno, Craene Johan Owen, Hammann Philippe, Nureki Osamu, Senger Bruno, Friant Sylvie, Becker Hubert D.

Cex1 is a component of the COPI intracellular trafficking machinery Journal Article

In: Biology Open, vol. 10, no. 3, pp. bio058528, 2021, ISSN: 2046-6390.

Abstract | Links | BibTeX | Tags: Arc1, Cex1, COPI coat, PPSE, SCYL1, trafficking

Scheer Hélène, Almeida Caroline, Ferrier Emilie, Simonnot Quentin, Poirier Laure, Pflieger David, Sement François M., Koechler Sandrine, Piermaria Christina, Krawczyk Paweł, Mroczek Seweryn, Chicher Johana, Kuhn Lauriane, Dziembowski Andrzej, Hammann Philippe, Zuber Hélène, Gagliardi Dominique

The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis Journal Article

In: Nature Communications, vol. 12, no. 1, pp. 1298, 2021, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: Arabidopsis, Arabidopsis Proteins, Co-Repressor Proteins, DEAD-box RNA Helicases, Gene Expression Regulation, Humans, messenger, Plant, PPSE, Proto-Oncogene Proteins, Ribonucleoproteins, RNA, RNA Nucleotidyltransferases, RNA Stability, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins, Small Interfering, Tobacco, transcriptome, Uridine

Montavon T C, Baldaccini M, Lefevre M, Girardi E, Chane-Woon-Ming B, Messmer M, Hammann P, Chicher J, Pfeffer S

Human DICER helicase domain recruits PKR and modulates its antiviral activity Journal Article

In: PLoS Pathog, vol. 17, no. 5, pp. e1009549, 2021, ISBN: 33984068, (1553-7374 (Electronic) 1553-7366 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: PFEFFER, PPSE, Unité ARN

Méteignier Louis-Valentin, Ghandour Rabea, Zimmerman Aude, Kuhn Lauriane, Meurer Jörg, Zoschke Reimo, Hammani Kamel

Arabidopsis mTERF9 protein promotes chloroplast ribosomal assembly and translation by establishing ribonucleoprotein interactions in vivo Journal Article

In: Nucleic Acids Research, vol. 49, no. 2, pp. 1114–1132, 2021, ISSN: 1362-4962.

Abstract | Links | BibTeX | Tags: 16S, 23S, Arabidopsis, Arabidopsis Proteins, Chloroplast Proteins, Chloroplasts, Gene Expression Regulation, Organelle Biogenesis, Peptide Termination Factors, Plant, Polyribosomes, PPSE, Protein Biosynthesis, Recombinant Proteins, Ribonucleoproteins, Ribosomal, ribosomes, RNA, Substrate Specificity

2020

Tidu A, Janvier A, Schaeffer L, Sosnowski P, Kuhn L, Hammann P, Westhof E, Eriani G, Martin F

The viral protein NSP1 acts as a ribosome gatekeeper for shutting down host translation and fostering SARS-CoV-2 translation Journal Article

In: RNA, vol. 27, no. 3, pp. 253-264, 2020.

Abstract | Links | BibTeX | Tags: ERIANI, PPSE, Unité ARN

Perraud Quentin, Kuhn Lauriane, Fritsch Sarah, Graulier Gwenaëlle, Gasser Véronique, Normant Vincent, Hammann Philippe, Schalk Isabelle J.

Opportunistic use of catecholamine neurotransmitters as siderophores to access iron by Pseudomonas aeruginosa Journal Article

In: Environmental Microbiology, 2020, ISSN: 1462-2920.

Abstract | Links | BibTeX | Tags: PPSE

Soufari Heddy, Waltz Florent, Parrot Camila, Durrieu-Gaillard Stéphanie, Bochler Anthony, Kuhn Lauriane, Sissler Marie, Hashem Yaser

Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis. Journal Article

In: Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 47, pp. 29851–29861, 2020, ISSN: 1091-6490 0027-8424.

Abstract | Links | BibTeX | Tags: PPSE

Soufari Heddy, Parrot Camila, Kuhn Lauriane, Waltz Florent, Hashem Yaser

Specific features and assembly of the plant mitochondrial complex I revealed by cryo-EM. Journal Article

In: Nature communications, vol. 11, no. 1, pp. 5195, 2020, ISSN: 2041-1723 2041-1723.

Abstract | Links | BibTeX | Tags: PPSE

Incarbone Marco, Scheer Hélene, Hily Jean-Michel, Kuhn Lauriane, Erhardt Mathieu, Dunoyer Patrice, Altenbach Denise, Ritzenthaler Christophe

Characterization of a DCL2-Insensitive Tomato Bushy Stunt Virus Isolate Infecting Arabidopsis thaliana. Journal Article

In: Viruses, vol. 12, no. 10, 2020, ISSN: 1999-4915 1999-4915.

Abstract | Links | BibTeX | Tags: PPSE

Normant Vincent, Josts Inokentijs, Kuhn Lauriane, Perraud Quentin, Fritsch Sarah, Hammann Philippe, Mislin Gaëtan L A, Tidow Henning, Schalk Isabelle J

Nocardamine-Dependent Iron Uptake in Pseudomonas aeruginosa: Exclusive Involvement of the FoxA Outer Membrane Transporter. Journal Article

In: ACS chemical biology, vol. 15, no. 10, pp. 2741–2751, 2020, ISSN: 1554-8937 1554-8929.

Abstract | Links | BibTeX | Tags: PPSE

Kröll-Hermi Ariane, Ebstein Frédéric, Stoetzel Corinne, Geoffroy Véronique, Schaefer Elise, Scheidecker Sophie, Bär Séverine, Takamiya Masanari, Kawakami Koichi, Zieba Barbara A, Studer Fouzia, Pelletier Valerie, Eyermann Carine, Speeg-Schatz Claude, Laugel Vincent, Lipsker Dan, Sandron Florian, McGinn Steven, Boland Anne, Deleuze Jean-François, Kuhn Lauriane, Chicher Johana, Hammann Philippe, Friant Sylvie, Etard Christelle, Krüger Elke, Muller Jean, Strähle Uwe, Dollfus Hélène

Proteasome subunit PSMC3 variants cause neurosensory syndrome combining deafness and cataract due to proteotoxic stress. Journal Article

In: EMBO molecular medicine, vol. 12, no. 7, pp. e11861, 2020, ISSN: 1757-4684 1757-4676 1757-4676.

Abstract | Links | BibTeX | Tags: PPSE

Perraud Quentin, Cantero Paola, Roche Béatrice, Gasser Véronique, Normant Vincent P, Kuhn Lauriane, Hammann Philippe, Mislin Gaëtan L A, Ehret-Sabatier Laurence, Schalk Isabelle J

Phenotypic Adaption of Pseudomonas aeruginosa by Hacking Siderophores Produced by Other Microorganisms. Journal Article

In: Molecular & cellular proteomics : MCP, vol. 19, no. 4, pp. 589–607, 2020, ISSN: 1535-9484 1535-9476 1535-9476.

Abstract | Links | BibTeX | Tags: PPSE

Janel-Bintz Régine, Kuhn Lauriane, Frit Philippe, Chicher Johana, Wagner Jérôme, Haracska Lajos, Hammann Philippe, Cordonnier Agnès M

Proteomic Analysis of DNA Synthesis on a Structured DNA Template in Human Cellular Extracts: Interplay Between NHEJ and Replication-Associated Proteins. Journal Article

In: Proteomics, vol. 20, no. 3-4, pp. e1900184, 2020, ISSN: 1615-9861 1615-9853.

Abstract | Links | BibTeX | Tags: PPSE

Simonetti A, Guca E, Bochler A, Kuhn L, Hashem Y

Structural Insights Into the Mammalian Late-Stage Initiation Complexes Journal Article

In: Cell Rep, vol. 31, no. 1, pp. 107497, 2020, ISBN: 32268096.

Abstract | Links | BibTeX | Tags: ENNIFAR, PPSE, Unité ARN

Rol-Moreno J, Kuhn L, Marzi S, Simonetti A

Grad-cryo-EM: Tool to Isolate Translation Initiation Complexes From Rabbit Reticulocyte Lysate Suitable for Structural Studies Book Chapter

In: Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, vol. 2113, pp. 329-339, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006323.

Abstract | Links | BibTeX | Tags: ENNIFAR, PPSE, ROMBY, Unité ARN