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2021

Dahlet Thomas, Truss Matthias, Frede Ute, Adhami Hala Al, Bardet Anaïs F., Dumas Michael, Vallet Judith, Chicher Johana, Hammann Philippe, Kottnik Sarah, Hansen Peter, Luz Uschi, Alvarez Gonzalo, Auclair Ghislain, Hecht Jochen, Robinson Peter N., Hagemeier Christian, Weber Michael

E2F6 initiates stable epigenetic silencing of germline genes during embryonic development Journal Article

In: Nature Communications, vol. 12, no. 1, pp. 3582, 2021, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: Animals, Binding Sites, Cell Differentiation, CpG Islands, CRISPR-Cas Systems, DNA Methylation, E2F6 Transcription Factor, Embryonic Development, Epigenesis, Gene Silencing, Genetic, Germ Cells, Knockout, Mice, Mouse Embryonic Stem Cells, Polycomb Repressive Complex 1, PPSE, RNA, Small Interfering

2014

Bonnay François, Nguyen Xuan-Hung, Cohen-Berros Eva, Troxler Laurent, Batsche Eric, Camonis Jacques, Takeuchi Osamu, Reichhart Jean-Marc, Matt Nicolas

Akirin specifies NF-κB selectivity of Drosophila innate immune response via chromatin remodeling Journal Article

In: EMBO J., vol. 33, no. 20, pp. 2349–2362, 2014, ISSN: 1460-2075.

Abstract | Links | BibTeX | Tags: Animals, bioinformatic, Cell Cycle Proteins, Chromatin Assembly and Disassembly, chromatin remodeling, DNA-Binding Proteins, Female, Genetic, Immunity, Innate, Innate immune response, M3i, Male, matt, Mutation, NF-kappa B, NF‐κB, Promoter Regions, proteomics, reichhart, Trans-Activators, Transcription Factors, Transcriptional Activation, Two-Hybrid System Techniques

Tartey Sarang, Matsushita Kazufumi, Vandenbon Alexis, Ori Daisuke, Imamura Tomoko, Mino Takashi, Standley Daron M, Hoffmann Jules A, Reichhart Jean-Marc, Akira Shizuo, Takeuchi Osamu

Akirin2 is critical for inducing inflammatory genes by bridging IκB-ζ and the SWI/SNF complex Journal Article

In: EMBO J., vol. 33, no. 20, pp. 2332–2348, 2014, ISSN: 1460-2075.

Abstract | Links | BibTeX | Tags: Adaptor Proteins, Animals, Cell Nucleus, Chromatin Assembly and Disassembly, chromatin remodeling, Chromosomal Proteins, cytokine, Cytokines, Female, Gene Expression Regulation, gene regulation, Genetic, hoffmann, Humans, Immunity, Innate, innate immunity, Knockout, Listeria monocytogenes, M3i, Macrophages, Male, Mice, Multiprotein Complexes, Non-Histone, Nuclear Proteins, Promoter Regions, Protein Binding, reichhart, Repressor Proteins, Sequence Deletion, Signal Transducing, Transcriptional Activation

Goto Akira, Fukuyama Hidehiro, Imler Jean-Luc, Hoffmann Jules A

The chromatin regulator DMAP1 modulates activity of the nuclear factor B (NF-B) transcription factor Relish in the Drosophila innate immune response Journal Article

In: The Journal of Biological Chemistry, vol. 289, no. 30, pp. 20470–20476, 2014, ISSN: 1083-351X.

Abstract | Links | BibTeX | Tags: Animals, Cell Line, Chromatin Assembly and Disassembly, Epistasis, Escherichia coli, Escherichia coli Infections, Genetic, hoffmann, imler, Immunity, Innate, M3i, NF-kappa B, Repressor Proteins, Signal Transduction, Transcription Factors

2009

Berry Bassam, Deddouche Safia, Kirschner Doris, Imler Jean-Luc, Antoniewski Christophe

Viral suppressors of RNA silencing hinder exogenous and endogenous small RNA pathways in Drosophila Journal Article

In: PloS One, vol. 4, no. 6, pp. e5866, 2009, ISSN: 1932-6203.

Abstract | Links | BibTeX | Tags: Animals, Antiviral Agents, Crosses, Double-Stranded, Gene Silencing, Genetic, Genetically Modified, Heterozygote, imler, Invertebrate, M3i, Photoreceptor Cells, Reverse Transcriptase Polymerase Chain Reaction, RNA, RNA Interference, Transgenes

Messmer M, Putz J, Suzuki T, Sauter C, Sissler M, Florentz C

Tertiary network in mammalian mitochondrial tRNAAsp revealed by solution probing and phylogeny Journal Article

In: Nucleic Acids Res, vol. 37, no. 20, pp. 6881-6895, 2009, ISBN: 19767615, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article Research Support, Non-U.S. Gov't).

Abstract | Links | BibTeX | Tags: Asp/*chemistry/*metabolism Transcription, Base Sequence Databases, FLORENTZ, FRUGIER, Genetic, Nucleic Acid Humans Molecular Sequence Data Nucleic Acid Conformation Phylogeny RNA/*chemistry/*metabolism RNA, SAUTER, SISSLER, Transfer, Unité ARN

Geissmann T, Chevalier C, Cros M J, Boisset S, Fechter P, Noirot C, Schrenzel J, Francois P, Vandenesch F, Gaspin C, Romby P

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation Journal Article

In: Nucleic Acids Res, vol. 37, no. 21, pp. 7239-7257, 2009, ISBN: 19786493, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article Research Support, Non-U.S. Gov't).

Abstract | Links | BibTeX | Tags: Bacillus subtilis/genetics/metabolism Base Sequence Computational Biology Conserved Sequence Gene Expression Profiling *Gene Expression Regulation, Bacterial Molecular Sequence Data Proteomics RNA Stability RNA, Genetic, Messenger/metabolism RNA, ROMBY, Unité ARN, Untranslated/*chemistry/genetics/metabolism Staphylococcus aureus/*genetics Transcription

2008

Deddouche Safia, Matt Nicolas, Budd Aidan, Mueller Stefanie, Kemp Cordula, Galiana-Arnoux Delphine, Dostert Catherine, Antoniewski Christophe, Hoffmann Jules A, Imler Jean-Luc

The DExD/Ħ-box helicase Dicer-2 mediates the induction of antiviral activity in drosophila Journal Article

In: Nature Immunology, vol. 9, no. 12, pp. 1425–1432, 2008, ISSN: 1529-2916.

Abstract | Links | BibTeX | Tags: Amino Acid, Animals, Electrophoresis, Fat Body, Gene Expression Regulation, Genetic, Genetically Modified, hoffmann, Humans, imler, M3i, matt, Phylogeny, Polyacrylamide Gel, Reverse Transcriptase Polymerase Chain Reaction, Ribonuclease III, RNA Helicases, Sequence Homology, Transcription, Virus Diseases

Bringel Françoise, Hammann Philippe, Kugler Valérie, Arsène-Ploetze Florence

Lactobacillus plantarum response to inorganic carbon concentrations: PyrR2-dependent and -independent transcription regulation of genes involved in arginine and nucleotide metabolism. Journal Article

In: Microbiology (Reading, England), vol. 154, no. Pt 9, pp. 2629–2640, 2008, ISSN: 1350-0872 1350-0872, (Place: England).

Abstract | Links | BibTeX | Tags: Arginine/*biosynthesis, Argininosuccinate Lyase/genetics, Bacterial, Bacterial Proteins/*genetics, Bacterial/genetics, Carbon Compounds, Carbon Dioxide/metabolism, Electrophoresis, Gel, Gene Expression Regulation, Genetic, IMP Dehydrogenase/genetics, Inorganic/*metabolism, Lactobacillus plantarum/enzymology/genetics/*metabolism, Mass, Matrix-Assisted Laser Desorption-Ionization, Nucleotides/*biosynthesis, Pentosyltransferases/*genetics, PPSE, proteomics, Repressor Proteins/*genetics, Reverse Transcriptase Polymerase Chain Reaction, RNA, Spectrometry, Transcription, Two-Dimensional

Roetzer Andreas, Gregori Christa, Jennings Ann Marie, Quintin Jessica, Ferrandon Dominique, Butler Geraldine, Kuchler Karl, Ammerer Gustav, Schüller Christoph

Candida glabrata environmental stress response involves Saccharomyces cerevisiae Msn2/4 orthologous transcription factors Journal Article

In: Mol. Microbiol., vol. 69, no. 3, pp. 603–620, 2008, ISSN: 1365-2958.

Abstract | Links | BibTeX | Tags: Animals, Candida glabrata, Candidiasis, DNA-Binding Proteins, ferrandon, Fungal, Fungal Proteins, Gene Expression Profiling, Gene Expression Regulation, Genetic, Humans, M3i, Oligonucleotide Array Sequence Analysis, Osmotic Pressure, Regulon, Saccharomyces cerevisiae Proteins, Transcription, Transcription Factors, Virulence, Yeasts

Ramirez B C, Simon-Loriere E, Galetto R, Negroni M

Implications of recombination for HIV diversity Journal Article

In: Virus Res, vol. 134, no. 1-2, pp. 64-73, 2008, ISBN: 18308413, (0168-1702 (Print) 0168-1702 (Linking) Journal Article Research Support, Non-U.S. Gov't Review).

Abstract | Links | BibTeX | Tags: *Genetic Variation Genome, Genetic, NEGRONI, Unité ARN, Viral HIV/classification/*genetics/immunology/isolation & purification HIV Infections/drug therapy/immunology/transmission/virology Humans *Recombination

Archer J, Pinney J W, Fan J, Simon-Loriere E, Arts E J, Negroni M, Robertson D L

Identifying the important HIV-1 recombination breakpoints Journal Article

In: PLoS Comput Biol, vol. 4, no. 9, pp. e1000178, 2008, ISBN: 18787691, (1553-7358 (Electronic) Journal Article Research Support, Non-U.S. Gov't).

Abstract | Links | BibTeX | Tags: Computational Biology Evolution, env Genetic Variation Genome, Genetic, Genetic Models, Molecular Genes, NEGRONI, Statistical RNA, Unité ARN, Viral HIV Infections/virology HIV-1/*genetics Humans *Models, Viral/genetics *Recombination

2007

Croker Ben, Crozat Karine, Berger Michael, Xia Yu, Sovath Sosathya, Schaffer Lana, Eleftherianos Ioannis, Imler Jean-Luc, Beutler Bruce

ATP-sensitive potassium channels mediate survival during infection in mammals and insects Journal Article

In: Nature Genetics, vol. 39, no. 12, pp. 1453–1460, 2007, ISSN: 1546-1718.

Abstract | Links | BibTeX | Tags: Animals, ATP-Binding Cassette Transporters, Cloning, Coronary Vessels, Crosses, Ethylnitrosourea, Genetic, Homozygote, imler, infection, Inwardly Rectifying, KATP Channels, Lipopolysaccharides, M3i, Mice, Molecular, Mutagenesis, Potassium Channels, Sulfonylurea Receptors

2006

Chen Li-Ying, Wang Juinn-Chin, Hyvert Yann, Lin Hui-Ping, Perrimon Norbert, Imler Jean-Luc, Hsu Jui-Chou

Weckle is a zinc finger adaptor of the toll pathway in dorsoventral patterning of the Drosophila embryo Journal Article

In: Current biology: CB, vol. 16, no. 12, pp. 1183–1193, 2006, ISSN: 0960-9822.

Abstract | Links | BibTeX | Tags: Adaptor Proteins, Animals, Antigens, Biological, Body Patterning, Cell Membrane, Differentiation, dimerization, DNA-Binding Proteins, Embryo, Epistasis, Genetic, imler, Immunity, Immunologic, Innate, M3i, Models, Mutation, Nonmammalian, Phenotype, Phosphoproteins, Receptors, Signal Transducing, Toll-Like Receptors, Transcription Factors, Zinc Fingers

2005

Dostert Catherine, Jouanguy Emmanuelle, Irving Phil, Troxler Laurent, Galiana-Arnoux Delphine, Hetru Charles, Hoffmann Jules A, Imler Jean-Luc

The Jak-STAT signaling pathway is required but not sufficient for the antiviral response of drosophila Journal Article

In: Nature Immunology, vol. 6, no. 9, pp. 946–953, 2005, ISSN: 1529-2908.

Abstract | Links | BibTeX | Tags: Animals, bioinformatic, DNA-Binding Proteins, Genetic, Genetically Modified, hoffmann, imler, Insect Viruses, Janus Kinase 1, M3i, Male, Oligonucleotide Array Sequence Analysis, Promoter Regions, Protein-Tyrosine Kinases, Signal Transduction, STAT1 Transcription Factor, Trans-Activators

Graindorge J S, Senger B, Tritch D, Simos G, Fasiolo F

Role of Arc1p in the modulation of yeast glutamyl-tRNA synthetase activity Journal Article

In: Biochemistry, vol. 44, no. 4, pp. 1344-1352, 2005, ISBN: 15667228, (0006-2960 Journal Article).

Abstract | Links | BibTeX | Tags: FASIOLO Adenosine Triphosphate/chemistry/metabolism Amino Acid Sequence Aminoacylation Base Sequence Diphosphates/chemistry/metabolism Enzyme Activation Gene Expression Regulation, Fungal Glutamate-tRNA Ligase/isolation & purification/*metabolism Kinetics Molecular Sequence Data Peptide Fragments/chemistry/metabolism Protein Binding Protein Structure, Fungal/genetics/metabolism RNA, Genetic, Glu/genetics/metabolism RNA-Binding Proteins/*chemistry/isolation & purification/metabolism Research Support, Non-U.S. Gov't Saccharomyces cerevisiae/enzymology/genetics/metabolism Saccharomyces cerevisiae Proteins/*chemistry/isolation & purification/metabolism Transcription, Tertiary RNA, Transfer, Unité ARN

2004

Martineau Y., Bec C. Le, Monbrun L., Allo V., Chiu I. M., Danos O., Moine H., Prats H., Prats A. C.

Internal ribosome entry site structural motifs conserved among mammalian fibroblast growth factor 1 alternatively spliced mRNAs Journal Article

In: Mol Cell Biol, vol. 24, no. 17, pp. 7622-35, 2004, (0270-7306 Journal Article).

Abstract | BibTeX | Tags: (Genetics), *5', *Alternative, *Nucleic, *Promoter, 1/*genetics, Acid, Alignment, Animals, Base, Cell, Conformation, Data, EHRESMANN, Factor, Fibroblast, Gene, Genes, Genetic, Gov't, Growth, Human, Line, Messenger/chemistry/*genetics/metabolism, Mice, Molecular, Muscle, Mutagenesis, Non-U.S., Regions, Ribosomes/*metabolism, RNA, Sequence, Site-Directed, Skeletal/cytology/physiology, Splicing, Structural/genetics, Support, Techniques, Transfer, Untranslated, Vectors

Mohr S., Bottin M. C., Lannes B., Neuville A., Bellocq J. P., Keith G., Rihn B. H.

Microdissection, mRNA amplification and microarray: a study of pleural mesothelial and malignant mesothelioma cells Journal Article

In: Biochimie, vol. 86, no. 1, pp. 13-9, 2004, (0300-9084 Journal Article).

Abstract | BibTeX | Tags: Analysis, Array, Chain, Epithelium/*metabolism, Expression, Female, Gene, Genetic, Human, KEITH, Lasers, Male, Markers, Mesothelioma/*genetics/metabolism, messenger, Microdissection, Neoplasms/*genetics/metabolism, Neoplastic/*genetics, Oligonucleotide, Pleura/*cytology/*metabolism, Pleural, Polymerase, Profiling, Reaction, Regulation, Reverse, RNA, Sequence, Transcriptase

Zukiel R., Nowak S., Barciszewska A. M., Gawronska I., Keith G., Barciszewska M. Z.

A simple epigenetic method for the diagnosis and classification of brain tumors Journal Article

In: Mol Cancer Res, vol. 2, no. 3, pp. 196-202, 2004, (1541-7786 Journal Article).

Abstract | BibTeX | Tags: *DNA, *Epigenesis, 5-Methylcytosine/*analysis, Adult, Aged, and, Brain, Chromatography, DNA, Female, Genetic, Gov't, Human, KEITH, Layer, Male, Methylation, Middle, Neoplasm/*chemistry/*metabolism, Neoplasms/*classification/*diagnosis/genetics/pathology, Non-U.S., Oxidative, oxygen, Reactive, Sensitivity, Species/metabolism, Specificity, Stress, Support, Thin

Blandin Stephanie A, Shiao Shin-Hong, Moita Luis F, Janse Chris J, Waters Andrew P, Kafatos Fotis C, Levashina Elena A

Complement-like protein TEP1 is a determinant of vectorial capacity in the malaria vector Anopheles gambiae Journal Article

In: Cell, vol. 116, no. 5, pp. 661–670, 2004, ISSN: 0092-8674.

Abstract | BibTeX | Tags: Animals, Anopheles, blandin, Female, Genetic, Humans, Insect Proteins, Insect Vectors, M3i, Malaria, Models, Molecular, Plasmodium berghei, Polymorphism, Protein Structure, RNA, Sequence Alignment, Tertiary

Malnou C E, Werner A, Borman A M, Westhof E, Kean K M

Effects of vaccine strain mutations in domain V of the internal ribosome entry segment compared in the wild type poliovirus type 1 context Journal Article

In: J Biol Chem, vol. 279, no. 11, pp. 10261-10269, 2004, ISBN: 14672927, (0021-9258 Journal Article).

Abstract | Links | BibTeX | Tags: Base Sequence Blotting, Genetic, Messenger/metabolism Ribosomes/*genetics Support, Non-U.S. Gov't Translation, Tertiary RNA/chemistry RNA, Unité ARN, Viral Electrophoresis, Western DNA, WESTHOF

2003

Ligoxygakis Petros, Roth Siegfried, Reichhart Jean-Marc

A serpin regulates dorsal-ventral axis formation in the Drosophila embryo Journal Article

In: Curr. Biol., vol. 13, no. 23, pp. 2097–2102, 2003, ISSN: 0960-9822.

Abstract | BibTeX | Tags: Animals, Body Patterning, Cell Surface, Crosses, Female, Genetic, Immunohistochemistry, M3i, Microinjections, Receptors, reichhart, Serine Proteinase Inhibitors, Serpins, Signal Transduction, Toll-Like Receptors

Goto Akira, Blandin Stéphanie A, Royet Julien, Reichhart Jean-Marc, Levashina Elena A

Silencing of Toll pathway components by direct injection of double-stranded RNA into Drosophila adult flies Journal Article

In: Nucleic Acids Res., vol. 31, no. 22, pp. 6619–6623, 2003, ISSN: 1362-4962.

Abstract | BibTeX | Tags: Animals, blandin, Cell Surface, Double-Stranded, Epistasis, Female, Genetic, Green Fluorescent Proteins, Homeodomain Proteins, Luminescent Proteins, M3i, Phenotype, Receptors, reichhart, RNA, RNA Interference, Serpins, Signal Transduction, Time Factors, Toll-Like Receptors, Transcription Factors

Luna C, Hoa N T, Zhang J, Kanzok S M, Brown S E, Imler Jean-Luc, Knudson D L, Zheng L

Characterization of three Toll-like genes from mosquito Aedes aegypti Journal Article

In: Insect Molecular Biology, vol. 12, no. 1, pp. 67–74, 2003, ISSN: 0962-1075.

Abstract | BibTeX | Tags: Aedes, Animals, Base Sequence, Cell Surface, Chimera, Cloning, Developmental, Female, Gene Expression Regulation, Genetic, imler, Insect Proteins, M3i, Male, messenger, Models, Molecular, Mutagenesis, Promoter Regions, Receptors, Reverse Transcriptase Polymerase Chain Reaction, RNA, Sequence Alignment, Signal Transduction, Site-Directed, Transfection

Heyman T., Wilhelm M., Wilhelm F. X.

The central PPT of the yeast retrotransposon Ty1 is not essential for transposition Journal Article

In: J Mol Biol, vol. 331, no. 2, pp. 315-20, 2003, (0022-2836 Journal Article).

Abstract | BibTeX | Tags: Base, cerevisiae/genetics, Data, DNA/*biosynthesis, Genetic, Gov't, Models, Molecular, Mutation, Non-U.S., Purines/*chemistry, Retroelements/*genetics, Saccharomyces, Sequence, Support

Wilhelm F. X., Wilhelm M., Gabriel A.

Extension and cleavage of the polypurine tract plus-strand primer by Ty1 reverse transcriptase Journal Article

In: J Biol Chem, vol. 278, no. 48, pp. 47678-84, 2003, (0021-9258 Journal Article).

Abstract | BibTeX | Tags: Base, Calf, Data, DNA, DNA/chemistry, Genetic, Gov't, H, Messenger/metabolism, Models, Molecular, Non-U.S., P.H.S., Polymerase/*chemistry, Primers, Proteins/chemistry, Purines/*chemistry, Recombinant, Replication, Retroelements/*genetics, Ribonuclease, RNA, RNA-Directed, RNA/chemistry, Sequence, Support, Templates, Thymus/chemistry, U.S., Viral

Wilhelm F X, Wilhelm M, Gabriel A

Extension and cleavage of the polypurine tract plus-strand primer by Ty1 reverse transcriptase Journal Article

In: J Biol Chem, vol. 278, no. 48, pp. 47678-47684, 2003, ISBN: 14500728, (0021-9258 Journal Article).

Abstract | Links | BibTeX | Tags: Base Sequence DNA/chemistry DNA Primers DNA Replication Models, Calf Thymus/chemistry Support, Genetic, Genetic Molecular Sequence Data Purines/*chemistry RNA/chemistry RNA, Messenger/metabolism RNA, Non-U.S. Gov't Support, P.H.S. Templates, U.S. Gov't, Unité ARN, Viral RNA-Directed DNA Polymerase/*chemistry Recombinant Proteins/chemistry Retroelements/*genetics Ribonuclease H

Serganov A, Polonskaia A, Ehresmann B, Ehresmann C, Patel D J

Ribosomal protein S15 represses its own translation via adaptation of an rRNA-like fold within its mRNA Journal Article

In: EMBO J, vol. 22, no. 8, pp. 1898-1908, 2003, ISBN: 12682022, (0261-4189 Journal Article).

Abstract | Links | BibTeX | Tags: Bacterial Proteins/genetics/metabolism Binding Sites *Nucleic Acid Conformation Protein Binding Protein Footprinting RNA, Genetic, Messenger/chemistry/*metabolism Repressor Proteins/genetics/*metabolism Ribosomal Proteins/genetics/*metabolism Ribosomes/metabolism Support, P.H.S. Thermus thermophilus/genetics/metabolism *Translation, U.S. Gov't, Unité ARN

Romby P, Springer M

Bacterial translational control at atomic resolution Journal Article

In: Trends Genet, vol. 19, no. 3, pp. 155-161, 2003, ISBN: 12615010, (0168-9525 Journal Article Review Review, Tutorial).

Abstract | Links | BibTeX | Tags: Bacterial *Gene Expression Regulation, Bacterial Models, Base Sequence Conserved Sequence Escherichia coli/*enzymology/*genetics *Gene Expression Regulation, Biological Models, Enzymologic Genes, Genetic, Messenger/genetics/*metabolism RNA, Molecular Molecular Mimicry Nucleic Acid Conformation Operator Regions (Genetics) RNA, Non-U.S. Gov't Threonine-tRNA Ligase/chemistry/*genetics/metabolism *Translation, ROMBY, Thr/*metabolism RNA-Binding Proteins/metabolism Support, Transfer, Unité ARN

Rigourd M, Goldschmidt V, Brule F, Morrow C D, Ehresmann B, Ehresmann C, Marquet R

Structure-function relationships of the initiation complex of HIV-1 reverse transcription: the case of mutant viruses using tRNA(His) as primer Journal Article

In: Nucleic Acids Res, vol. 31, no. 19, pp. 5764-5775, 2003, ISBN: 14500840, (1362-4962 Journal Article).

Abstract | Links | BibTeX | Tags: Base Sequence Comparative Study DNA, Genetic, Genetic *Transcription Initiation Site *Transcription, His/*metabolism RNA, MARQUET, Non-U.S. Gov't Templates, Post-Transcriptional RNA, Transfer, Unité ARN, Viral HIV-1/*genetics/metabolism HIV-1 Reverse Transcriptase/metabolism Kinetics Macromolecular Systems Molecular Sequence Data Mutation RNA Probes RNA Processing, Viral/*biosynthesis/genetics Sequence Alignment Structure-Activity Relationship Support, Viral/biosynthesis *Gene Expression Regulation

Goldschmidt V, Ehresmann C, Ehresmann B, Marquet R

Does the HIV-1 primer activation signal interact with tRNA3(Lys) during the initiation of reverse transcription? Journal Article

In: Nucleic Acids Res, vol. 31, no. 3, pp. 850-859, 2003, ISBN: 12560480, (1362-4962 Journal Article).

Abstract | Links | BibTeX | Tags: Amino Acyl/chemistry/*metabolism RNA, Base Sequence Binding Sites DNA Primers DNA, Genetic, MARQUET, Non-U.S. Gov't *Transcription, Transfer, Unité ARN, Viral HIV-1/*genetics HIV-1 Reverse Transcriptase/*metabolism Kinetics Molecular Sequence Data Mutation Nucleic Acid Conformation Oligoribonucleotides RNA, Viral/biosynthesis *Gene Expression Regulation, Viral/chemistry/genetics/metabolism Support

Florentz C, Sohm B, Tryoen-Toth P, Putz J, Sissler M

Human mitochondrial tRNAs in health and disease Journal Article

In: Cell Mol Life Sci, vol. 60, no. 7, pp. 1356-1375, 2003, ISBN: 12943225, (1420-682x Journal Article Review Review, Academic).

Abstract | Links | BibTeX | Tags: Base Sequence Genetic Diseases, FLORENTZ, Genetic, Inborn/*genetics Genome Human Mitochondria/*genetics Molecular Sequence Data Nucleic Acid Conformation RNA/chemistry/*genetics RNA, Messenger/genetics/metabolism RNA, Non-U.S. Gov't Translation, SISSLER, Transfer/chemistry/*genetics Reference Values Support, Unité ARN

2002

Christophides George K, Zdobnov Evgeny, Barillas-Mury Carolina, Birney Ewan, Blandin Stephanie A, Blass Claudia, Brey Paul T, Collins Frank H, Danielli Alberto, Dimopoulos George, Hetru Charles, Hoa Ngo T, Hoffmann Jules A, Kanzok Stefan M, Letunic Ivica, Levashina Elena A, Loukeris Thanasis G, Lycett Gareth, Meister Stephan, Michel Kristin, Moita Luis F, Müller Hans-Michael, Osta Mike A, Paskewitz Susan M, Reichhart Jean-Marc, Rzhetsky Andrey, Troxler Laurent, Vernick Kenneth D, Vlachou Dina, Volz Jennifer, von Mering Christian, Xu Jiannong, Zheng Liangbiao, Bork Peer, Kafatos Fotis C

Immunity-related genes and gene families in Anopheles gambiae Journal Article

In: Science, vol. 298, no. 5591, pp. 159–165, 2002, ISSN: 1095-9203.

Abstract | Links | BibTeX | Tags: Alternative Splicing, Animals, Anopheles, Apoptosis, bacteria, bioinformatic, blandin, Catechol Oxidase, Computational Biology, Enzyme Precursors, Gene Expression Regulation, Genes, Genetic, Genome, hoffmann, Immunity, Innate, Insect, Insect Proteins, M3i, Multigene Family, Peptides, Phylogeny, Plasmodium, Protein Structure, reichhart, Selection, Serine Endopeptidases, Serpins, Signal Transduction, Tertiary

Bates Elizabeth E M, Fridman Wolf H, Mueller Chris G F

The ADAMDEC1 (decysin) gene structure: evolution by duplication in a metalloprotease gene cluster on chromosome 8p12 Journal Article

In: Immunogenetics, vol. 54, no. 2, pp. 96–105, 2002, ISSN: 0093-7711.

Abstract | Links | BibTeX | Tags: ADAM Proteins, Amino Acid Sequence, Animals, Base Sequence, Chromosomes, Evolution, Gene Dosage, Gene Duplication, Genetic, Human, Humans, Inbred BALB C, Macaca mulatta, Membrane Glycoproteins, Metalloendopeptidases, Mice, Molecular, Molecular Sequence Data, Multigene Family, Pair 8, Promoter Regions, Sequence Alignment, Team-Mueller

Gottar Marie, Gobert Vanessa, Michel Tatiana, Belvin Marcia, Duyk Geoffrey, Hoffmann Jules A, Ferrandon Dominique, Royet Julien

The Drosophila immune response against Gram-negative bacteria is mediated by a peptidoglycan recognition protein Journal Article

In: Nature, vol. 416, pp. 640–644, 2002, ISBN: 0028-0836.

Abstract | Links | BibTeX | Tags: Animal, Anti-Infective Agents/metabolism, Carrier Proteins/biosynthesis/genetics/*immunology, Drosophila melanogaster/genetics/*immunology/*microbiology, Drosophila Proteins/genetics/metabolism, Epistasis, Female, ferrandon, Genes, Genetic, Genetic Predisposition to Disease, Gram-Negative Bacteria/*immunology/physiology, hoffmann, Human, Insect/genetics, M3i, Messenger/genetics/metabolism, Mutation, Non-U.S. Gov't, P.H.S., Phenotype, RNA, Signal Transduction, Support, Survival Rate, Transgenes/genetics, U.S. Gov't

Cristofari G., Bampi C., Wilhelm M., Wilhelm F. X., Darlix J. L.

A 5'-3' long-range interaction in Ty1 RNA controls its reverse transcription and retrotransposition Journal Article

In: EMBO J, vol. 21, no. 16, pp. 4368-79, 2002, (0261-4189 Journal Article).

Abstract | BibTeX | Tags: *Gene, *Transcription, Acid, cerevisiae/*genetics, Complementary/biosynthesis, Conformation, DNA, Expression, Fungal, Fungal/chemistry/*metabolism, Genetic, Gov't, in, Messenger/chemistry/*metabolism, Non-U.S., Nucleic, Phylogeny, Regulation, Retroelements/*genetics, RNA, Saccharomyces, Support, vitro

Francklyn C., Perona J. J., Putz J., Hou Y. M.

Aminoacyl-tRNA synthetases: versatile players in the changing theater of translation Journal Article

In: RNA, vol. 8, no. 11, pp. 1363-1372, 2002.

Abstract | BibTeX | Tags: Aminoacyl-tRNA, Code, Genetic, GIEGE, synthetases

Reichhart Jean-Marc, Ligoxygakis Petros, Naitza Silvia, Woerfel Gertrud, Imler Jean-Luc, Gubb David

Splice-activated UAS hairpin vector gives complete RNAi knockout of single or double target transcripts in Drosophila melanogaster Journal Article

In: Genesis (New York, N.Y.: 2000), vol. 34, no. 1-2, pp. 160–164, 2002, ISSN: 1526-954X.

Links | BibTeX | Tags: Animals, DNA Transposable Elements, DNA-Binding Proteins, Enhancer Elements, Genetic, Genetic Vectors, Genetically Modified, imler, M3i, reichhart, Saccharomyces cerevisiae Proteins, Transcription Factors

Tauszig-Delamasure Servane, Bilak Hana, Capovilla Maria, Hoffmann Jules A, Imler Jean-Luc

Drosophila MyD88 is required for the response to fungal and Gram-positive bacterial infections Journal Article

In: Nature Immunology, vol. 3, no. 1, pp. 91–97, 2002, ISSN: 1529-2908.

Abstract | Links | BibTeX | Tags: Adaptor Proteins, Amino Acid, Animals, Antigens, Antimicrobial Cationic Peptides, Cell Surface, Chromosome Mapping, Differentiation, Disease Susceptibility, Enterococcus faecalis, Epistasis, Escherichia coli, Female, Gene Expression Regulation, Genes, Genetic, Genetically Modified, Gram-Negative Bacteria, hoffmann, Hypocreales, imler, Immunologic, Insect, Insect Proteins, M3i, Membrane Glycoproteins, Micrococcus luteus, Myeloid Differentiation Factor 88, Protein Structure, Protein-Serine-Threonine Kinases, Receptors, Recombinant Fusion Proteins, Sequence Alignment, Sequence Homology, Signal Transducing, Tertiary, Toll-Like Receptors, Transfection

Imler Jean-Luc, Hoffmann Jules A

Toll receptors in Drosophila: a family of molecules regulating development and immunity Journal Article

In: Current Topics in Microbiology and Immunology, vol. 270, pp. 63–79, 2002, ISSN: 0070-217X.

Abstract | BibTeX | Tags: Animals, Cell Surface, Genetic, Gram-Negative Bacteria, hoffmann, imler, M3i, Receptors, Signal Transduction, Toll-Like Receptors, Transcription

Torres-Larios A, Dock-Bregeon A C, Romby P, Rees B, Sankaranarayanan R, Caillet J, Springer M, Ehresmann C, Ehresmann B, Moras D

Structural basis of translational control by Escherichia coli threonyl tRNA synthetase Journal Article

In: Nat Struct Biol, vol. 9, no. 5, pp. 343-347, 2002, ISBN: 11953757, (1072-8368 Journal Article).

Abstract | Links | BibTeX | Tags: Anticodon/genetics Base Sequence Crystallography, Bacterial/chemistry/genetics/metabolism RNA, Genetic, Messenger/chemistry/genetics/*metabolism RNA, Molecular Molecular Sequence Data Nucleic Acid Conformation Protein Conformation RNA, Non-U.S. Gov't Threonine-tRNA Ligase/*chemistry/*metabolism *Translation, ROMBY, Transfer/chemistry/genetics/metabolism Sequence Alignment Structure-Activity Relationship Support, Unité ARN, X-Ray Escherichia coli/*enzymology/genetics Models

Goldschmidt V, Rigourd M, Ehresmann C, Grice S F Le, Ehresmann B, Marquet R

Direct and indirect contributions of RNA secondary structure elements to the initiation of HIV-1 reverse transcription Journal Article

In: J Biol Chem, vol. 277, no. 45, pp. 43233-43242, 2002, ISBN: 12194974, (0021-9258 Journal Article).

Abstract | Links | BibTeX | Tags: Base Sequence DNA Primers DNA Replication HIV-1/*genetics HIV-1 Reverse Transcriptase/*metabolism Human Kinetics Polymerase Chain Reaction RNA, Genetic, Lys/genetics RNA, MARQUET, Non-U.S. Gov't Transcription, Transfer, Unité ARN, Viral/*chemistry/*genetics/metabolism Support

Cristofari G, Bampi C, Wilhelm M, Wilhelm F X, Darlix J L

A 5'-3' long-range interaction in Ty1 RNA controls its reverse transcription and retrotransposition Journal Article

In: EMBO J, vol. 21, no. 16, pp. 4368-4379, 2002, ISBN: 12169639, (0261-4189 Journal Article).

Abstract | Links | BibTeX | Tags: Complementary/biosynthesis *Gene Expression Regulation, DNA, Fungal In Vitro Nucleic Acid Conformation Phylogeny RNA, Fungal/chemistry/*metabolism RNA, Genetic, Messenger/chemistry/*metabolism Retroelements/*genetics Saccharomyces cerevisiae/*genetics Support, Non-U.S. Gov't *Transcription, Unité ARN

Brule F, Marquet R, Rong L, Wainberg M A, Roques B P, Grice S F Le, Ehresmann B, Ehresmann C

Structural and functional properties of the HIV-1 RNA-tRNA(Lys)3 primer complex annealed by the nucleocapsid protein: comparison with the heat-annealed complex Journal Article

In: RNA, vol. 8, no. 1, pp. 8-15, 2002, ISBN: 11873759, (1355-8382 Journal Article).

Abstract | Links | BibTeX | Tags: Genetic, Genetic Transcription, Lys/*chemistry/genetics/metabolism RNA, MARQUET, Non-U.S. Gov't Templates, Transfer, Unité ARN, Viral/*chemistry/genetics/metabolism Support

2001

Boutabout M., Wilhelm M., Wilhelm F. X.

DNA synthesis fidelity by the reverse transcriptase of the yeast retrotransposon Ty1 Journal Article

In: Nucleic Acids Res, vol. 29, no. 11, pp. 2217-22, 2001, (1362-4962 Journal Article).

Abstract | BibTeX | Tags: cerevisiae/*genetics/metabolism, DNA, Fungal/genetics, Fungal/genetics/*metabolism, Genetic, Gov't, Kinetics, Non-U.S., Nucleotides/genetics/metabolism, Polymerase/*metabolism, Retroelements/*genetics, RNA, RNA-Directed, Saccharomyces, Support, Templates

Moine H., Mandel J. L.

Biomedicine. Do G quartets orchestrate fragile X pathology? Journal Article

In: Science, vol. 294, no. 5551, pp. 2487-8, 2001, (0036-8075 Journal Article).

BibTeX | Tags: Acid, Analysis, Animals, Array, Binding, Brain/metabolism, Conformation, Crystallography, Expression, Fragile, Gene, Genetic, Human, Messenger/*chemistry/genetics/*metabolism, Mice, Nerve, Nucleic, Oligonucleotide, Protein, Proteins/chemistry/genetics/*metabolism, Regions, Regulation, RNA, Sequence, Sites, structure, Synapses/physiology, Syndrome/genetics/*metabolism, Tertiary, Tissue, Translation, Untranslated, X, X-Ray

Levashina Elena A, Moita L F, Blandin Stéphanie A, Vriend G, Lagueux Marie, Kafatos F C

Conserved role of a complement-like protein in phagocytosis revealed by dsRNA knockout in cultured cells of the mosquito, Anopheles gambiae Journal Article

In: Cell, vol. 104, no. 5, pp. 709–718, 2001, ISSN: 0092-8674.

Abstract | BibTeX | Tags: alpha-Macroglobulins, Animals, Anopheles, blandin, Cells, Cloning, Complement C3, Cultured, DNA Fragmentation, Double-Stranded, Female, Genetic, Gram-Negative Bacteria, Hemocytes, Insect Proteins, M3i, Molecular, Nucleic Acid Denaturation, Phagocytosis, Protein Structure, RNA, Tertiary, Transcription

Monneaux F, Dumortier H, Steiner G, Briand J P, Muller S

Murine models of systemic lupus erythematosus: B and Ŧ cell responses to spliceosomal ribonucleoproteins in MRL/Fas(lpr) and (NZB x NZW)F(1) lupus mice Journal Article

In: International Immunology, vol. 13, no. 9, pp. 1155–1163, 2001, ISSN: 0953-8178.

Abstract | Links | BibTeX | Tags: Animals, Antibody Specificity, B-Lymphocytes, Crosses, Dumortier, fas Receptor, Female, Genetic, Heterogeneous-Nuclear Ribonucleoprotein Group A-B, Heterogeneous-Nuclear Ribonucleoproteins, Histocompatibility Antigens Class II, I2CT, Immunoglobulin G, Inbred MRL lpr, Inbred NZB, Lupus Erythematosus, Mice, Monneaux, Peptide Fragments, Ribonucleoprotein, Ribonucleoproteins, Small Nuclear, Species Specificity, Spliceosomes, Systemic, T-Lymphocytes, Team-Dumortier, U1 Small Nuclear

2000

Lagueux Marie, Perrodou E, Levashina Elena A, Capovilla Maria, Hoffmann Jules A

Constitutive expression of a complement-like protein in toll and JAK gain-of-function mutants of Drosophila Journal Article

In: Proc. Natl. Acad. Sci. U.S.A., vol. 97, no. 21, pp. 11427–11432, 2000, ISSN: 0027-8424.

Abstract | Links | BibTeX | Tags: alpha-Macroglobulins, Amino Acid, Animals, Cell Surface, Complement C3, Esters, Genetic, hoffmann, Insect Proteins, Janus Kinases, M3i, Membrane Glycoproteins, Mutation, Protein-Tyrosine Kinases, Proteins, Receptors, Sequence Homology, Sulfhydryl Compounds, Toll-Like Receptors, Transcription, Transcription Factors

Adamkewicz J I, Mueller C G, Hansen K E, Prud'homme W A, Thorner J

Purification and enzymic properties of Mot1 ATPase, a regulator of basal transcription in the yeast Saccharomyces cerevisiae Journal Article

In: The Journal of Biological Chemistry, vol. 275, no. 28, pp. 21158–21168, 2000, ISSN: 0021-9258.

Abstract | Links | BibTeX | Tags: Adenosine Triphosphatases, Base Sequence, Chromatography, DNA Helicases, DNA-Binding Proteins, Fungal, Gel, Gene Expression Regulation, Genetic, Kinetics, Molecular Sequence Data, Molecular Weight, Osmolar Concentration, Recombinant Proteins, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins, TATA Box, TATA-Binding Protein Associated Factors, TATA-Box Binding Protein, Team-Mueller, Transcription, Transcription Factors

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