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1252 entries « 1 of 26 »

2021

Vicens Q, Bochler A, Jobe A, Frank J, Hashem Y

Interaction Networks of Ribosomal Expansion Segments in Kinetoplastids Book Chapter

In: 96 , pp. 433-450, Subcellular Biochemistry, 2021.

Abstract | Links | BibTeX | Tags: Eukaryotic translation, Expansion segment, Kinetoplastid parasite, Ribosomal RNA, Ribosome structure, Unité ARN

Bec G, Ennifar E

switchSENSE Technology for Analysis of DNA Polymerase Kinetics Book Chapter

In: Rederstorff, M (Ed.): 2247 , pp. 145-153, Springer Protocols, Humana Press, New York, NY, Small Non-Coding RNAs, 2021.

Abstract | BibTeX | Tags: Biosensor, DNA polymerase, ENNIFAR, HIV reverse transcriptase, Kinetics, switchSENSE technology, Unité ARN

Libre C, Seissler T, Guerrero S, Batisse J, Verriez C, Stupfler B, Gilmer O, Weber M M, Cimarelli A, Etienne L, Marquet R, Paillart J C

A conserved uORF impacts APOBEC3G translation and is essential for translational inhibition by the HIV-1 Vif protein Journal Article

In: bioRxiv, 2021.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Lalaouna D, Fochesato S, Harir M, Ortet P, Schmitt-Kopplin P, Heulin T, Achouak W

Amplifying and Fine-Tuning Rsm sRNAs Expression and Stability to Optimize the Survival of Pseudomonas brassicacerum in Nutrient-Poor Environments Journal Article

In: Microorganisms, 9 (2), pp. 250, 2021.

Abstract | Links | BibTeX | Tags: GacA-dependent, nutritional stress, Pseudomonas brassicacearum, ROMBY, Rsm sRNAs, sRNAs stability, Unité ARN

Li G, Eriani G, Wang E D, Zhou X L

Distinct pathogenic mechanisms of various RARS1 mutations in Pelizaeus-Merzbacher-like disease Journal Article

In: Sci China Life Sci, 64 (10), pp. 1645-1660, 2021, ISBN: 33515434, (1869-1889 (Electronic) 1674-7305 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: aminoacyl-tRNA synthetase (aaRS), central nervous system (CNS), ERIANI, Protein Biosynthesis, translation initiation, tRNA, Unité ARN

Mercier N, Prévost K, Massé E, Romby P, Caldelari I, Lalaouna D

MS2-Affinity Purification Coupled with RNA Sequencing in Gram-Positive Bacteria Journal Article

In: J Vis Exp, pp. e61731, 2021.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Catalan-Moreno A, Cela M, Menendez-Gil P, Irurzun N, Caballero C J, Caldelari I, Toledo-Arana A

RNA thermoswitches modulate Staphylococcus aureus adaptation to ambient temperatures Journal Article

In: Nucleic Acids Res, pp. on press, 2021, ISBN: 33660769, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Pitchai F, Chameettachal A, Vivet-Boudou V, Ali L M, Pillai V N, Krishnan A, Bernacchi S, Mustafa F, R Marquet, Rizvi T A

Identification of Pr78Gag binding sites on the Mason-Pfizer monkey virus genomic RNA packaging determinants Journal Article

In: J Mol Biol, 433 (10), pp. 166923, 2021.

Abstract | Links | BibTeX | Tags: MARQUET, Retroviruses Gag-RNA interactions Purines Footprinting hSHAPE, Unité ARN

Busienne C, Marquet R, Paillart J C, Bernacchi S

Post-Translational Modifications of Retroviral HIV-1 Gag Precursors: An Overview of Their Biological Role Journal Article

In: Int. J. Mol. Sci., 22 (6), pp. 2871, 2021.

Abstract | Links | BibTeX | Tags: HIV-1, MARQUET, PAILLART, post-translational modifications, Pr55Gag precursor, retroviral Gag precursors, retroviral life cycle, Unité ARN

Chameettachal A, Vivet-Boudou V, Pitchai F N, N Pillai V, Ali L M, Krishnan A, Bernacchi S, Mustafa F, Marquet R, Rizvi T A

A purine loop and the primer binding site are critical for the selective encapsidation of mouse mammary tumor virus genomic RNA by Pr77Gag Journal Article

In: Nucleic Acids Res, 49 (8), pp. 4668-4688, 2021.

BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Westhof E, Leontis N B

An RNA-centric historical narrative around the Protein Data Bank Journal Article

In: J Biol Chem, 296 , pp. 100555, 2021, ISBN: 33744291, (1083-351X (Electronic) 0021-9258 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: Computational Biology, Databases, modelling, Protein Data Bank, RNA, Structural biology, Unité ARN, WESTHOF

Husser C, Dentz N, Ryckelynck M

Structure-Switching RNAs: From Gene Expression Regulation to Small Molecule Detection Journal Article

In: Small Structures, 2 (4), pp. 2000132, 2021.

Abstract | Links | BibTeX | Tags: biosensing, Gene Expression Regulation, riboswitches, RNA aptamers, RYCKELYNCK, Synthetic Biology, Unité ARN

Stupfler B, Verriez C, Gallois-Montbrun S, Marquet R, Paillart J C

Degradation-independent inhibition of APOBEC3G by HIV-1 Vif protein Journal Article

In: Viruses, 13 (4), pp. 617, 2021.

Abstract | Links | BibTeX | Tags: APOBEC3G, deamination, encapsidation, HIV, MARQUET, PAILLART, proteasome, RNP granules, Translation, ubiquitin, Unité ARN, vif

Chagot M E, Quinternet M, Manival X, Lebars I

Application of NMR Spectroscopy to Determine the 3D Structure of Small Non-Coding RNAs Journal Article

In: Methods Mol Biol, 2300 , pp. 251-266, 2021, ISBN: 33792884, (1940-6029 (Electronic) 1064-3745 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: 3D structure, dynamics, ENNIFAR, NMR, RNA, Unité ARN

Andre A C, Debande L, Marteyn B S

The selective advantage of facultative anaerobes relies on their unique ability to cope with changing oxygen levels during infection Journal Article

In: Cell Microbiol, 23 (8), pp. e13338, 2021, ISBN: 33813807, (1462-5822 (Electronic) 1462-5814 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: MARTEYN, Unité ARN

de Wijn R, Rollet K, Olieric V, Hennig O, Thome N, Nous C, Paulus C, Lorber B, Betat H, Morl M, Sauter C

Crystallization and Structural Determination of an Enzyme:Substrate Complex by Serial Crystallography in a Versatile Microfluidic Chip Journal Article

In: J Vis Exp, (169), 2021, ISBN: 33818565, (1940-087X (Electronic) 1940-087X (Linking) Journal Article Video-Audio Media).

Abstract | Links | BibTeX | Tags: FRUGIER, Unité ARN

Injarabian L, Skerniskyte J, Gianetto Q G, Witko-Sarsat V, Marteyn B S

Reducing neutrophil exposure to oxygen allows their basal state maintenance Journal Article

In: Immunol Cell Biol, 99 (7), pp. 782-789, 2021, ISBN: 33811670, (1440-1711 (Electronic) 0818-9641 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Activation, anoxia, hyperoxia, MARTEYN, neutrophils, Unité ARN, viability

Velours C, Aumont-Nicaise M, Uebel S, England P, Velazquez-Campoy A, Stroebel D, Bec G, Soule P, Quetard C, Ebel C, Roussel A, Charbonnier J B, Varela P F

Macromolecular interactions in vitro, comparing classical and novel approaches Journal Article

In: Eur Biophys J, 50 (3-4), pp. 313-330, 2021, ISBN: 33792745, (1432-1017 (Electronic) 0175-7571 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Artificial binders, Double-stranded DNA breaks repair factors, ENNIFAR, Macromolecular interactions, Molecular scale biophysics, Unité ARN

Alghoul F, Eriani G, Martin F

RNA Secondary Structure Study by Chemical Probing Methods Using DMS and CMCT Book Chapter

In: Rederstorff, M (Ed.): Methods Mol Biol, 2300 , pp. 241-250, Springer Protocols, Humana Press, New York, NY, 2021, ISBN: 978-1-0716-1385-6/ISSN, (1940-6029 (Electronic) 1064-3745 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Capillary electrophoresis, chemical probing, CMCT, DMS, ERIANI, Primer extension, QuSHAPE, RNA secondary structure, Unité ARN

Bouhedda F, Cubi R, Baudrey S, Ryckelynck M

microIVC-Seq: A Method for Ultrahigh-Throughput Development and Functional Characterization of Small RNAs Book Chapter

In: Rederstorff, M (Ed.): Small Non-Coding RNAs, 2300 , pp. 203-237, Springer Protocols, Humana Press, New York, NY, Small Non-Coding RNAs, 2021, ISBN: 978-1-0716-1385-6/ISSN, (1940-6029 (Electronic) 1064-3745 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Artificial RNAs, directed evolution, Droplet microfluidics, Functional screening, In vitro selection, RNA, RYCKELYNCK, RYCKELYNCK Artificial RNAs, Unité ARN

Skerniskyte J, Karazijaite E, Luciunaite A, Suziedeliene E

OmpA Protein-Deficient Acinetobacter baumannii Outer Membrane Vesicles Trigger Reduced Inflammatory Response Journal Article

In: Pathogens, 10 (4), pp. 407, 2021, ISBN: 33807410, (2076-0817 (Print) 2076-0817 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Acinetobacter baumannii, inflammasome, inflammation, Macrophages, MARTEYN, outer membrane vesicles, Unité ARN

Bereiter R, Himmelstoss M, Renard E, Mairhofer E, Egger M, Breuker K, Kreutz C, Ennifar E, Micura R

Impact of 3-deazapurine nucleobases on RNA properties Journal Article

In: Nucleic Acids Res, 49 (8), pp. 4281-4293, 2021, ISBN: 33856457, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

Omar R El, Julien E, Biasch K, Guffroy B, Lioure B, Vallat L, Gross I, Domon-Dell C, Lanza F, Gachet C, Negroni M, Freund J N, Tavian M

CDX2 regulates ACE expression in blood development and leukemia cells Journal Article

In: Blood Adv, 5 (7), pp. 2012-2016, 2021, ISBN: 33843985, (2473-9537 (Electronic) 2473-9529 (Linking) Journal Article).

Links | BibTeX | Tags: NEGRONI, Unité ARN

Schenckbecher E, Bec G, Sakamoto T, Meyer B, Ennifar E

Biophysical Studies of the Binding of Viral RNA with the 80S Ribosome Using switchSENSE Journal Article

In: Methods Mol Biol, 2263 , pp. 341-350, 2021, ISBN: 33877606, (1940-6029 (Electronic) 1064-3745 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Biophysics, ENNIFAR, Kinetics, Ribosome, RNA, switchSENSE, Unité ARN

Toccafondi E, Lener D, Negroni M

HIV-1 Capsid Core: A Bullet to the Heart of the Target Cell Journal Article

In: Front Microbiol, 12 , pp. 652486, 2021, ISBN: 33868211, (1664-302X (Print) 1664-302X (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: NEGRONI, Unité ARN

Velazquez-Campoy A, Claro B, Abian O, Horing J, Bourlon L, Claveria-Gimeno R, Ennifar E, England P, Chaires J B, Wu D, Piszczek G, Brautigam C, Tso S C, Zhao H, Schuck P, Keller S, Bastos M

A multi-laboratory benchmark study of isothermal titration calorimetry (ITC) using Ca(2+) and Mg(2+) binding to EDTA Journal Article

In: Eur Biophys J, 50 (3-4), pp. 429-451, 2021, ISBN: 33864101, (1432-1017 (Electronic) 0175-7571 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Benchmark study, Data treatment, ENNIFAR, Isothermal Titration Calorimetry (ITC), Ligand-binding, Sample preparation, Standard reaction, Unité ARN

Goettsch W, Beerenwinkel N, Deng L, Dolken L, Dutilh B E, Erhard F, Kaderali L, von Kleist M, Marquet R, Matthijnssens J, McCallin S, McMahon D, Rattei T, Rij R P Van, Robertson D L, Schwemmle M, Stern-Ginossar N, Marz M

ITN-VIROINF: Understanding (Harmful) Virus-Host Interactions by Linking Virology and Bioinformatics Journal Article

In: Viruses, 13 (5), 2021, ISBN: 33925452, (1999-4915 (Electronic) 1999-4915 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: MARQUET, Unité ARN

Cubi R, Bouhedda F, Collot M, Klymchenko A S, Ryckelynck M

microIVC-Useq: a microfluidic-assisted high-throughput functionnal screening in tandem with next generation sequencing and artificial neural network to rapidly characterize RNA molecules Journal Article

In: Rna, 27 (7), pp. 841-853, 2021, ISBN: 33952671, (1469-9001 (Electronic) 1355-8382 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Bioinformatics, droplet-based microfluidics, high-throughput screening, light-up RNA aptamer, RNA engineering, RYCKELYNCK, Unité ARN

Montavon T C, Baldaccini M, Lefevre M, Girardi E, Chane-Woon-Ming B, Messmer M, Hammann P, Chicher J, Pfeffer S

Human DICER helicase domain recruits PKR and modulates its antiviral activity Journal Article

In: PLoS Pathog, 17 (5), pp. e1009549, 2021, ISBN: 33984068, (1553-7374 (Electronic) 1553-7366 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: PFEFFER, PPSE, Unité ARN

Alghoul F, Laure S, Eriani G, Martin F

Translation inhibitory elements from Hoxa3 and Hoxa11 mRNAs use uORFs for translation inhibition Journal Article

In: Elife, 10 , 2021, ISBN: 34076576, (2050-084X (Electronic) 2050-084X (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ERIANI, Unité ARN

Ramos-Morales E, Bayam E, Del-Pozo-Rodriguez J, Salinas-Giege T, Marek M, Tilly P, Wolff P, Troesch E, Ennifar E, Drouard L, Godin J D, Romier C

The structure of the mouse ADAT2/ADAT3 complex reveals the molecular basis for mammalian tRNA wobble adenosine-to-inosine deamination Journal Article

In: Nucleic Acids Res, 49 (11), pp. 6529-6548, 2021, ISBN: 34057470, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

Ortet P, Fochesato S, Bitbol A F, Whitworth D E, Lalaouna D, Santaella C, Heulin T, Achouak W, Barakat M

Evolutionary history expands the range of signaling interactions in hybrid multikinase networks Journal Article

In: Sci Rep, 11 (1), pp. 11763, 2021, ISBN: 34083699.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Himmelstoss M, Erharter K, Renard E, Ennifar E, Kreutz C, Micura R

2'-O-Trifluoromethylated RNA - a powerful modification for RNA chemistry and NMR spectroscopy Journal Article

In: Chem Sci, 11 (41), pp. 11322-11330, 2021, ISBN: 34094374, (2041-6520 (Print) 2041-6520 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

Moya-Alvarez V, Koyembi J J, Kaye L M, Mbecko J R, Sanke-Waigana H, Djorie S G, Nyasenu Y T, Mad-Bondo D, Kongoma J B, Nakib S, Madec Y, Ulmann G, Neveux N, Sansonetti P J, Vray M, Marteyn B

Vitamin C levels in a Central-African mother-infant cohort: Does hypovitaminosis C increase the risk of enteric infections? Journal Article

In: Matern Child Nutr, pp. e13215, 2021, ISBN: 34137176, (1740-8709 (Electronic) 1740-8695 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: MARTEYN, Unité ARN

Giuliodori A M, Marzi S

Editorial: Interview With the Translational Apparatus: Stories of Intriguing Circuits and Mechanisms to Regulate Translation in Bacteria Journal Article

In: Front Microbiol, 12 , pp. 707354, 2021, ISBN: 34220790, (1664-302X (Print) 1664-302X (Linking) Editorial).

Links | BibTeX | Tags: ROMBY, Unité ARN

Marszalkowski M, Werner A, Feltens R, Helmecke D, Gossringer M, Westhof E, Hartmann R K

Comparative study on tertiary contacts and folding of RNase P RNAs from a psychrophilic, a mesophilic/radiation-resistant and a thermophilic bacterium Journal Article

In: Rna, 2021, ISBN: 34266994, (1469-9001 (Electronic) 1355-8382 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Unité ARN, WESTHOF

Barrientos L, Mercier N, Lalaouna D, Caldelari I

Assembling the Current Pieces: The Puzzle of RNA-Mediated Regulation in Staphylococcus aureus Journal Article

In: Front Microbiol, 12 , pp. 706690, 2021, ISBN: 34367109, (1664-302X (Print) 1664-302X (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Mediati D G, Lalaouna D, Tree J J

Burning the Candle at Both Ends: Have Exoribonucleases Driven Divergence of Regulatory RNA Mechanisms in Bacteria? Journal Article

In: mBio, pp. e0104121, 2021, ISBN: 34372700, (2150-7511 (Electronic) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Thepaut M, Campos-Silva R, Renard E, Barloy-Hubler F, Ennifar E, Boujard D, Gillet R

Safe and easy in vitro evaluation of tmRNA-SmpB-mediated trans-translation from ESKAPE pathogenic bacteria Journal Article

In: Rna, 2021, ISBN: 34353925, (1469-9001 (Electronic) 1355-8382 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ENNIFAR, Unité ARN

Vargas-Rodriguez O, Badran A H, Hoffman K S, Chen M, Crnkovic A, Ding Y, Krieger J R, Westhof E, Soll D, Melnikov S

Bacterial translation machinery for deliberate mistranslation of the genetic code Journal Article

In: Proc Natl Acad Sci U S A, 118 (35), 2021, ISBN: 34413202, (1091-6490 (Electronic) 0027-8424 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: Unité ARN

Vilimova M, Contrant M, Randrianjafy R, Dumas P, Elbasani E, Ojala P M, Pfeffer S, Fender A

Cis regulation within a cluster of viral microRNAs Journal Article

In: Nucleic Acids Res, 2021, ISBN: 34417603, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: PFEFFER, Unité ARN

Antoine L, Bahena-Ceron R, Bunwaree H Devi, Gobry M, Loegler V, Romby P, Marzi S

RNA Modifications in Pathogenic Bacteria: Impact on Host Adaptation and Virulence Journal Article

In: Genes (Basel), 12 (8), 2021, ISBN: 34440299, (2073-4425 (Electronic) 2073-4425 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Welker L, Paillart J C, Bernacchi S

Importance of Viral Late Domains in Budding and Release of Enveloped RNA Viruses Journal Article

In: Viruses, 13 (8), 2021, ISBN: 34452424, (1999-4915 (Electronic) 1999-4915 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: PAILLART, Unité ARN

Andre C, Veillard F, Wolff P, Lobstein A M, Compain G, Monsarrat C, Reichhart J M, Burnouf D Y, Guichard G, Wagner J E

Antibacterial activity of a dual peptide targeting the Escherichia coli sliding clamp and the ribosome Journal Article

In: RSC Chem Biol, 2 (4), pp. 1296, 2021, ISBN: 34459830, (2633-0679 (Electronic) 2633-0679 (Linking) Published Erratum).

Abstract | Links | BibTeX | Tags: ARN-MS, ENNIFAR, reichhart, Unité ARN

Cela M, Theobald-Dietrich A, Rudinger-Thirion J, Wolff P, Geslain R, Frugier M

Identification of host tRNAs preferentially recognized by the Plasmodium surface protein tRip Journal Article

In: Nucleic Acids Res, 2021, ISBN: 34530443, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ARN-MS, FRUGIER, Unité ARN

Gilmer O, Quignon E, Jousset A C, Paillart J C, Marquet R, Vivet-Boudou V

Chemical and Enzymatic Probing of Viral RNAs: From Infancy to Maturity and Beyond Journal Article

In: Viruses, 13 (10), pp. 1894, 2021.

Abstract | Links | BibTeX | Tags: Capillary electrophoresis, chemical probe, enzymatic probe, high-throughput sequencing, MARQUET, mutational profiling, PAILLART, RNA, SHAPE, structure, Unité ARN

Lalaouna D., Prévost K., Park S., Chénard T., Bouchard M - P., Caron M - P., Vanderpool C. K., Fei J., Massé E.

Binding of the RNA Chaperone Hfq on Target mRNAs Promotes the Small RNA RyhB-Induced Degradation in Escherichia coli Journal Article

In: Non-Coding RNA, 7 (4), pp. 64, 2021.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Singh G., Pereira D., Baudrey S., Hoffmann E., Ryckelynck M., Asnacios A., Chaboute M. E.

Real-time tracking of root hair nucleus morphodynamics using a microfluidic approach Journal Article

In: Plant J, pp. in press, 2021, ISBN: 34562320, (1365-313X (Electronic) 0960-7412 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: RYCKELYNCK, Unité ARN

2020

Thomès L, Lescure A

Mosaic evolution of the phosphopantothenate biosynthesis pathway in bacteria and archaea Journal Article

In: Genome Biology and Evolution, 13 (2), pp. evaa262, 2020.

Abstract | Links | BibTeX | Tags: Candidatus poribacteria, Coenzyme A, LESCURE, phosphopantothenate pathway, Unité ARN

Abaeva I S, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova T V, Hashem Y, Hellen C U T

The Halastavi árva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism Journal Article

In: Cell Reports, 33 (10), pp. 108476, 2020.

Abstract | Links | BibTeX | Tags: Cricket paralysis virus, Dicistrovirus, ENNIFAR, Halastavi árva virus; IRES, intergenic region, internal ribosomal entry site, pseudoknot, Ribosome, SERBP1, SERPINE1 mRNA binding protein 1, Unité ARN

1252 entries « 1 of 26 »