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121 entries « 1 of 3 »

2021

Lalaouna D, Fochesato S, Harir M, Ortet P, Schmitt-Kopplin P, Heulin T, Achouak W

Amplifying and Fine-Tuning Rsm sRNAs Expression and Stability to Optimize the Survival of Pseudomonas brassicacerum in Nutrient-Poor Environments Journal Article

In: Microorganisms, 9 (2), pp. 250, 2021.

Abstract | Links | BibTeX | Tags: GacA-dependent, nutritional stress, Pseudomonas brassicacearum, ROMBY, Rsm sRNAs, sRNAs stability, Unité ARN

Mercier N, Prévost K, Massé E, Romby P, Caldelari I, Lalaouna D

MS2-Affinity Purification Coupled with RNA Sequencing in Gram-Positive Bacteria Journal Article

In: J Vis Exp, pp. e61731, 2021.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Catalan-Moreno A, Cela M, Menendez-Gil P, Irurzun N, Caballero C J, Caldelari I, Toledo-Arana A

RNA thermoswitches modulate Staphylococcus aureus adaptation to ambient temperatures Journal Article

In: Nucleic Acids Res, pp. on press, 2021, ISBN: 33660769, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Ortet P, Fochesato S, Bitbol A F, Whitworth D E, Lalaouna D, Santaella C, Heulin T, Achouak W, Barakat M

Evolutionary history expands the range of signaling interactions in hybrid multikinase networks Journal Article

In: Sci Rep, 11 (1), pp. 11763, 2021, ISBN: 34083699.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Giuliodori A M, Marzi S

Editorial: Interview With the Translational Apparatus: Stories of Intriguing Circuits and Mechanisms to Regulate Translation in Bacteria Journal Article

In: Front Microbiol, 12 , pp. 707354, 2021, ISBN: 34220790, (1664-302X (Print) 1664-302X (Linking) Editorial).

Links | BibTeX | Tags: ROMBY, Unité ARN

Barrientos L, Mercier N, Lalaouna D, Caldelari I

Assembling the Current Pieces: The Puzzle of RNA-Mediated Regulation in Staphylococcus aureus Journal Article

In: Front Microbiol, 12 , pp. 706690, 2021, ISBN: 34367109, (1664-302X (Print) 1664-302X (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Mediati D G, Lalaouna D, Tree J J

Burning the Candle at Both Ends: Have Exoribonucleases Driven Divergence of Regulatory RNA Mechanisms in Bacteria? Journal Article

In: mBio, pp. e0104121, 2021, ISBN: 34372700, (2150-7511 (Electronic) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Antoine L, Bahena-Ceron R, Bunwaree H Devi, Gobry M, Loegler V, Romby P, Marzi S

RNA Modifications in Pathogenic Bacteria: Impact on Host Adaptation and Virulence Journal Article

In: Genes (Basel), 12 (8), 2021, ISBN: 34440299, (2073-4425 (Electronic) 2073-4425 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Lalaouna D., Prévost K., Park S., Chénard T., Bouchard M - P., Caron M - P., Vanderpool C. K., Fei J., Massé E.

Binding of the RNA Chaperone Hfq on Target mRNAs Promotes the Small RNA RyhB-Induced Degradation in Escherichia coli Journal Article

In: Non-Coding RNA, 7 (4), pp. 64, 2021.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

2020

Lalaouna D, Romby P

Manganese: the battle of the two armies Journal Article

In: Project Repository Journal, 2020.

Links | BibTeX | Tags: ROMBY, Unité ARN

Menendez-Gil P, Caballero C J, Catalan-Moreno A, Irurzun N, Barrio-Hernandez I, Caldelari I, Toledo-Arana A

Differential evolution in 3'UTRs leads to specific gene expression in Staphylococcus Journal Article

In: Nucleic Acids Res, 48 (5), pp. 2544-2563, 2020, ISBN: 32016395.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Georg J, Lalaouna D, Hou S, Lott S C, Caldelari I, Marzi S, Hess W R, Romby P

The power of cooperation: Experimental and computational approaches in the functional characterization of bacterial sRNAs Journal Article

In: Mol Microbiol, 113 (3), pp. 603-612, 2020, ISBN: 31705780.

Abstract | Links | BibTeX | Tags: ROMBY, Staphylococcus aureus CopraRNA MAPS post-transcriptional regulation sRNAs, Unité ARN

Antoine L, Wolff P

Mapping of Posttranscriptional tRNA Modifications by Two-Dimensional Gel Electrophoresis Mass Spectrometry Book Chapter

In: Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, 2113 , pp. 101-110, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006310.

Abstract | Links | BibTeX | Tags: 2D Gel isolation Nano-LC-MS/MS Posttranscriptional tRNA modifications, ARN-MS, ENNIFAR, ROMBY, Unité ARN

Desgranges E, Caldelari I, Marzi S, Lalaouna D

Navigation through the twists and turns of RNA sequencing technologies: Application to bacterial regulatory RNAs Journal Article

In: Biochim Biophys Acta Gene Regul Mech, 1863 (3), pp. 194506, 2020, ISBN: 32068131.

Abstract | Links | BibTeX | Tags: Bacteria Post-transcriptional regulation RNA sequencing Regulatory network Small regulatory RNA Targetome, ROMBY, Unité ARN

Bouhedda F, Fam K T, Collot M, Autour A, Marzi S, Klymchenko A, Ryckelynck M

A dimerization-based fluorogenic dye-aptamer module for RNA imaging in live cells Journal Article

In: Nat Chem Biol, 16 (1), pp. 69-76, 2020, ISBN: 31636432.

Abstract | Links | BibTeX | Tags: ROMBY, RYCKELYNCK, Unité ARN

Rol-Moreno J, Kuhn L, Marzi S, Simonetti A

Grad-cryo-EM: Tool to Isolate Translation Initiation Complexes From Rabbit Reticulocyte Lysate Suitable for Structural Studies Incollection

In: Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, 2113 , pp. 329-339, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 978-1-0716-0277-5/ISSN.

Abstract | Links | BibTeX | Tags: Cryo-electron microscopy Mass spectrometry Native ribosome complexes Translation initiation, ENNIFER, ROMBY, Unité ARN

2019

P Brown RELISH Consortium, Zhou Y

Large expert-curated database for benchmarking document similarity detection in biomedical literature search Journal Article

In: Database, 2019 (2019), pp. baz085, 2019.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Lalaouna D, Baude J, Wu Z, Tomasini A, Chicher J, Marzi S, Vandenesch F, Romby P, Caldelari I, Moreau K

RsaC sRNA modulates the oxidative stress response of Staphylococcus aureus during manganese starvation Journal Article

In: Nucleic Acids Res, 47 (18), pp. 9871-9887, 2019, ISBN: 31504767.

Abstract | Links | BibTeX | Tags: PPSE, ROMBY, Unité ARN

Desgranges E, Marzi S, Moreau K, Romby P, Caldelari I

Noncoding RNA Journal Article

In: Microbiol Spectr, 7 (2), pp. 1-2, 2019, ISBN: 31004423.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Desgranges E, Bronesky D, Corvaglia A, François P, Caballero C, Prado L, Toledo-Arana A, Lasa I, Moreau K, Vandenesch F, Marzi S, Romby P, Caldelari I

[RsaI, a multifaceted regulatory RNA, modulates the metabolism of the opportunistic pathogen Staphylococcus aureus] Journal Article

In: Med Sci (Paris), 35 (12), pp. 1221-1223, 2019, ISBN: 31903946.

Links | BibTeX | Tags: ROMBY, Unité ARN

Bronesky D, Desgranges E, Corvaglia A, François P, Caballero C J, Prado L, Toledo-Arana A, Lasa I, Moreau K, Vandenesch F, Marzi S, Romby P, Caldelari I

A multifaceted small RNA modulates gene expression upon glucose limitation in Staphylococcus aureus Journal Article

In: EMBO J, 38 (6), pp. e99363, 2019, ISBN: 30760492.

Abstract | Links | BibTeX | Tags: ROMBY, sRNA carbon metabolism catabolite control protein A pathogenic bacteria regulatory RNAs translational regulation, Unité ARN

Antoine L, Wolff P, Westhof E, Romby P, Marzi S

Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS Journal Article

In: Biochimie, 164 , pp. 60-69, 2019, ISBN: 31295507.

Abstract | Links | BibTeX | Tags: 2D gel isolation Staphylococcus aureus nanoLC/MSMS post-transcriptional tRNA modifications, ARN-MS, ENNIFAR, ROMBY, Unité ARN, WESTHOF

2018

Lalaouna D, Desgranges E, Caldelari I, Marzi S

MS2-Affinity Purification Coupled With RNA Sequencing Approach in the Human Pathogen Staphylococcus aureus Journal Article

In: Methods Enzymol, 612 , pp. 393-411, 2018, ISBN: 30502950.

Abstract | Links | BibTeX | Tags: Galaxy workflow Interactome MS2-affinity purification coupled with RNA sequencing RNA:RNA interaction Small regulatory RNA Staphylococcus aureus Targetome, ROMBY, Unité ARN

2017

Tomasini A, Moreau K, Chicher J, Geissmann T, Vandenesch F, Romby P, Marzi S, Caldelari I

The RNA targetome of Staphylococcus aureus non-coding RNA RsaA: impact on cell surface properties and defense mechanisms. Journal Article

In: Nucleic Acids Res, 45 (11), pp. 6746-6760, 2017, ISBN: 28379505.

Abstract | Links | BibTeX | Tags: PPSE, ROMBY, Unité ARN

Lioliou E, Fechter P, Caldelari I, Jester B C, Dubrac S, Helfer A C, Boisset S, Vandenesch F, Romby P, Geissmann T

Erratum Journal Article

In: RNA Biol, 14 (12), pp. 1827, 2017, ISBN: 29243975.

Links | BibTeX | Tags: ROMBY, Unité ARN

Khusainov I, Vicens Q, Bochler A, Grosse F, Myasnikov A, Ménétret J F, Chicher J, Marzi S, Romby P, Yusupova G, Yusupov M, Hashem Y

Structure of the 70S ribosome from human pathogen Staphylococcus aureus. Journal Article

In: Nucleic Acids Res, 45 (2), pp. 1026, 2017, ISBN: 28123039.

Abstract | Links | BibTeX | Tags: PPSE, ROMBY, Unité ARN

Durand S, Braun F, Helfer A C, Romby P, Condon C

sRNA-mediated activation of gene expression by inhibition of 5'-3' exonucleolytic mRNA degradation. Journal Article

In: Elife, 6 , pp. e23602, 2017, ISBN: 28436820.

Abstract | Links | BibTeX | Tags: b. subtilis chromosomes genes infectious disease microbiology, ROMBY, Unité ARN

Caldelari I, Chane-Woon-Ming B, Noirot C, Moreau K, Romby P, Gaspin C, Marzi S

Complete genome sequence and annotation of the Staphylococcus aureus strain HG001 Journal Article

In: Genome Announc, 5 (32), pp. e00783-00717, 2017, ISBN: 28798184.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Duval M, Marenna A, Chevalier C, Marzi S

Site-Directed Chemical Probing to map transient RNA/protein interactions. Journal Article

In: Methods, 117 , pp. 48-58, 2017, ISBN: 28027957.

Abstract | Links | BibTeX | Tags: BABE RNA chaperone proteins RNA/protein interaction hydroxyl radicals ribosomal protein S1 rpsO mRNA site directed chemical probing transient ribonucleoprotein complexes, ROMBY, Unité ARN

2016

Morfoisse F, Tatin F, Hantelys F, Adoue A, Helfer A C, Cassant-Sourdy S, Pujol F, Gomez-Brouchet A, Ligat L, Lopez F, Pyronnet S, Courty J, Guillermet-Guibert J, Marzi S, Schneider R J, Prats A C, Garmy-Susini B H

Nucleolin promotes heat shock-associated translation of VEGF-D to promote tumor lymphangiogenesis. Journal Article

In: Cancer Res, 76 (15), pp. 4394-4405, 2016, ISBN: 27280395.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Mollerup M Storm, Ross J A, Helfer A C, Meistrup K, Romby P, Kallipolitis B H

Two novel members of the LhrC family of small RNAs in Listeria monocytogenes with overlapping regulatory functions but distinctive expression profiles. Journal Article

In: RNA Biol, 13 (9), pp. 895-915, 2016, ISBN: 27400116.

Abstract | Links | BibTeX | Tags: Listeria monocytogenes antisense multiplicity post-transcriptional regulation sRNAs, ROMBY, Unité ARN

Lioliou E, Fechter P, Caldelari I, Jester B C, Dubrac S, Helfer A C, Boisset S, Vandenesch F, Romby P, Geissmann T

Various checkpoints prevent the synthesis of Staphylococcus aureus peptidoglycan hydrolase LytM in the stationary growth phase. Journal Article

In: RNA Biol, 13 (4), pp. 427-440, 2016, ISBN: 26901414.

Abstract | Links | BibTeX | Tags: LytM RNAIII Staphylococcus aureus autolysin cell wall peptidoglycan peptidoglycan hydrolase post-transcriptional regulation, ROMBY, Unité ARN

Khusainov I, Marenna A, Cerciat M, Fechter P, Hashem Y, Marzi S, Romby P, Yusupova G, Yusupov M

[A glimpse on Staphylococcus aureus translation machinery and its control]. Journal Article

In: Mol Biol (Mosk), 50 (4), pp. 549-557. Russian, 2016, ISBN: 27668596.

Abstract | Links | BibTeX | Tags: ROMBY, Staphylococcus aureus post-transcriptional regulation quorum sensing regulatory RNAs, Unité ARN

Fechter P, Parmentier D, Wu Z, Fuchsbauer O, Romby P, Marzi S

Traditional Chemical Mapping of RNA Structure In Vitro and In Vivo. Book Chapter

In: Turner, D; Mathews, D (Ed.): RNA Structure Determination: Methods and Protocols, 1490 , pp. 83-103, Springer Protocols, Humana Press, 2016, ISBN: 27665595.

Abstract | Links | BibTeX | Tags: Chemical mapping Lead(II) induced cleavages RNA structure probing, ROMBY, Unité ARN

Bronesky D, Wu Z, Marzi S, Walter P, Geissmann T, Moreau K, Vandenesch F, Caldelari I, Romby P

Staphylococcus aureus RNAIII and Its Regulon Link Quorum Sensing, Stress Responses, Metabolic Adaptation, and Regulation of Virulence Gene Expression. Journal Article

In: Annu Rev Microbiol, 70 , pp. 299-316, 2016, ISBN: 27482744.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

2015

Wagner E G, Romby P

Small RNAs in Bacteria and Archaea: Who They Are, What They Do, and How They Do It. Journal Article

In: Adv Genet, 90 , pp. 133-208, 2015, ISBN: 26296935.

Abstract | Links | BibTeX | Tags: Antisense RNA Hfq Interconnected networks Posttranscriptional regulation RNA sponges Regulatory RNA, ROMBY, Unité ARN

Romby P, Dontsova O

A glimpse at long regulatory RNAs in various organisms. Journal Article

In: Biochimie, 117 , pp. 1-2, 2015, ISBN: 26365222.

Links | BibTeX | Tags: ROMBY, Unité ARN

Nitzan M, Fechter P, Peer A, Altuvia Y, Bronesky D, Vandenesch F, Romby P, Biham O, Margalit H

A defense-offense multi-layered regulatory switch in a pathogenic bacterium. Journal Article

In: Nucleic Acids Res, 43 (3), pp. 1357-1369, 2015, ISBN: 25628364.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Durand S, Tomasini A, Braun F, Condon C, Romby P

sRNA and mRNA turnover in Gram-positive bacteria. Journal Article

In: FEMS Microbiol Rev, 39 (3), pp. 316-330, 2015, ISBN: 25934118.

Abstract | Links | BibTeX | Tags: Gram-positive bacteria mRNA stability ribonucleases sRNA, ROMBY, Unité ARN

Durand S, Braun F, Lioliou E, Romilly C, Helfer A C, Kuhn L, Quittot N, Nicolas P, Romby P, Condon C

A Nitric Oxide Regulated Small RNA Controls Expression of Genes Involved in Redox Homeostasis in Bacillus subtilis. Journal Article

In: PLoS Genet, 11 (2), pp. e1004957, 2015, ISBN: 25643072.

Abstract | Links | BibTeX | Tags: PPSE, ROMBY, Unité ARN

Duval M, Simonetti A, Caldelari I, Marzi S

Multiple ways to regulate translation initiation in bacteria: mechanisms, regulatory circuits, dynamics. Journal Article

In: Biochimie, 114 , pp. 18-29, 2015, ISBN: 25792421.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

2014

Morfoisse F, Kuchnio A, Frainay C, Gomez-Brouchet A, Delisle M B, Marzi S, Helfer A C, Hantelys F, Pujol F, Guillermet-Guibert J, Bousquet C, Dewerchin M, Pyronnet S, Prats A C, Carmeliet P, Garmy-Susini B

Hypoxia Induces VEGF-C Expression in Metastatic Tumor Cells via a HIF-1α-Independent Translation-Mediated Mechanism. Journal Article

In: Cell Rep, 6 (1), pp. 155-167, 2014, ISBN: 24388748.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Tomasini A, François P, Howden B P, Fechter P, Romby P, Caldelari I

The importance of regulatory RNAs in Staphylococcus aureus. Journal Article

In: Infect Genet Evol, 21 (C), pp. 616-626, 2014, ISBN: 24291227.

Abstract | Links | BibTeX | Tags: Regulatory RNA Staphylococcus Virulence, ROMBY, Unité ARN

Sesto N, Touchon M, Andrade J M, Kondo J, Rocha E P, Arraiano C M, Archambaud C, Westhof E, Romby P, Cossart P

A PNPase Dependent CRISPR System in Listeria. Journal Article

In: PLoS Genet, 10 (1), pp. e1004065, 2014, ISBN: 24415952.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN, WESTHOF

Romilly C, Lays C, Tomasini A, Caldelari I, Benito Y, Hammann P, Geissmann T, Boisset S, Romby P, Vandenesch F

A Non-Coding RNA Promotes Bacterial Persistence and Decreases Virulence by Regulating a Regulator in Staphylococcus aureus. Journal Article

In: PLoS Pathog, 10 (3), pp. e1003979, 2014, ISBN: 24651379.

Abstract | Links | BibTeX | Tags: PPSE, ROMBY, Unité ARN

Majzoub K, Hafirassou M L, Meignin C, Goto A, Marzi S, Fedorova A, Verdier Y, Vinh J, Hoffmann J A, Martin F, Baumert T F, Schuster C, Imler JL

RACK1 Controls IRES-Mediated Translation of Viruses. Journal Article

In: Cell, 159 (5), pp. 1086-1095, 2014, ISBN: 25416947.

Abstract | Links | BibTeX | Tags: ERIANI, hoffmann, imler, M3i, meignin, ROMBY, Unité ARN

2013

Duval M, Korepanov A, Fuchsbauer O, Fechter P, Haller A, Fabbretti A, Choulier L, Micura R, Klaholz B P, Romby P, Springer M, Marzi S

Escherichia coli Ribosomal Protein S1 Unfolds Structured mRNAs Onto the Ribosome for Active Translation Initiation. Journal Article

In: PLoS Biol, 11 (12), pp. e1001731, 2013, ISBN: 24339747.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Duval M, Romilly C, Helfer A C, Fuchsbauer O, Romby P, Marzi S

Footprinting methods for mapping RNA-protein and RNA-RNA interactions. Incollection

In: Klostermeier, D; Hammann, C (Ed.): RNA Structure and Folding, pp. 29-50, Verlag Walter de Gruyter, Berlin, 2013, ISBN: 9783110284959/ISSN.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Simonetti A, Marzi S, Billas I M, Tsai A, Fabbretti A, Myasnikov A G, Roblin P, Vaiana A C, Hazemann I, Eiler D, Steitz T A, Puglisi J D, Gualerzi C O, Klaholz B P

Involvement of protein IF2 N domain in ribosomal subunit joining revealed from architecture and function of the full-length initiation factor. Journal Article

In: Proc Natl Acad Sci U S A, 110 (39), pp. 15656-61, 2013, ISBN: 24029017.

Abstract | Links | BibTeX | Tags: ERIANI, integrated structural biology protein synthesis, ROMBY, Unité ARN

Simonetti A, Marzi S, Fabbretti A, Hazemann I, Jenner L, Urzhumtsev A, Gualerzi C O, Klaholz B P

Structure of the protein core of translation initiation factor 2 in apo, GTP-bound and GDP-bound forms. Journal Article

In: Acta Crystallogr D Biol Crystallogr, 69 (Pt 6), pp. 925-33, 2013, ISBN: 23695237.

Abstract | Links | BibTeX | Tags: ERIANI, ROMBY, Unité ARN

121 entries « 1 of 3 »