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2024

Niedner-Boblenz A., Monecke T., Hennig J., Klostermann M., Hofweber M., Gerber A. P., Anosova I., Mayer W., Müller M., Heym R., Janowski R., Paillart J. -C., Dormann D., Zarnack K., Sattler M., Niessing D.

Intrinsically disordered RNA-binding motifs cooperate to catalyze RNA folding and drive phase separation Journal Article

In: bioRxiv, 2024.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

2023

Labaronne E., Decimo D., Bertrand L., Guiguettaz L., Sohier T. J. M., Cluet D., Vivet-Boudou V., Dahoui C., François P., Hatin I., Lambotte O., Samri A., Autran B., Etienne L., Goujon C., Paillart J. -C., Namy O., Ramirez B. C., Ohlmann T., Morris A., Ricci E. P.

Extensive uORF translation from HIV-1 transcripts elicits specific T cell immune responses in infected individuals and conditions DDX3 dependency for expression of main ORFs Journal Article

In: (bioRxiv), 2023.

Links | BibTeX | Tags: PAILLART, Unité ARN

Lista M. J., Jousset A. -C., Cheng M., Saint-André V., Perrot E., Rodrigues M., Primo C. Di, Gadelle D., Toccafondi E., Segeral E., Berlioz-Torrent C., Emiliani S., Mergny J. -L., Lavigne M.

DNA topoisomerase 1 represses HIV-1 promoter activity through its interaction with a guanine quadruplex present in the LTR sequence Journal Article

In: Retrovirology, vol. 20, no. 1, pp. 10, 2023, ISSN: 1742-4690.

Abstract | Links | BibTeX | Tags: MARQUET, NEGRONI, PAILLART, Unité ARN

2022

Bonaventure B., Rebendenne A., Valadão A. L Chaves, Arnaud-Arnould M., Gracias S., de Gracia F. Garcia, McKellar J., Labaronne E., Tauziet M., Vivet-Boudou V., Bernard E., Briant L., Gros N., Djilli W., Courgnaud V., Parrinello H., Rialle S., Blaise M., Lacroix L., Lavigne M., Paillart J. -C., Ricci E. P, Schulz R., Jouvenet N., Moncorgé O., Goujon C.

The DEAD box RNA helicase DDX42 is an intrinsic inhibitor of positive-strand RNA viruses Journal Article

In: EMBO Rep, pp. e54061, 2022, ISSN: 1469-3178.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Libre C, Seissler T, Guerrero S, Batisse J, Verriez C, Stupfler B, Gilmer O, Cabrera-Rodriguez R, Weber M, Valenzuela-Fernandez A, Cimarelli A, Etienne L, Marquet R, Paillart J C

A Conserved uORF Regulates APOBEC3G Translation and Is Targeted by HIV-1 Vif Protein to Repress the Antiviral Factor Journal Article

In: Biomedicines, vol. 10, no. 1, pp. 13, 2022.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Gilmer O., Mailler E., Paillart J. C., Mouhand A., Tisne C., Mak J., Smyth R. P., Marquet R., Vivet-Boudou V.

Structural maturation of the HIV-1 RNA 5' untranslated region by Pr55(Gag) and its maturation products Journal Article

In: RNA Biol, vol. 19, no. 1, pp. 191-205, 2022, ISBN: 35067194, (1555-8584 (Electronic) 1547-6286 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Bernacchi S.

Visualization of Retroviral Gag-Genomic RNA Cellular Interactions Leading to Genome Encapsidation and Viral Assembly: An Overview Journal Article

In: Viruses, vol. 14, no. 2, 2022, ISBN: 35215917, (1999-4915 (Electronic) 1999-4915 (Linking) Journal Article Review Research Support, Non-U.S. Gov't).

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

2021

Busienne C, Marquet R, Paillart J C, Bernacchi S

Post-Translational Modifications of Retroviral HIV-1 Gag Precursors: An Overview of Their Biological Role Journal Article

In: Int. J. Mol. Sci., vol. 22, no. 6, pp. 2871, 2021.

Abstract | Links | BibTeX | Tags: HIV-1, MARQUET, PAILLART, post-translational modifications, Pr55Gag precursor, retroviral Gag precursors, retroviral life cycle, Unité ARN

Chameettachal A, Vivet-Boudou V, Pitchai F N, N Pillai V, Ali L M, Krishnan A, Bernacchi S, Mustafa F, Marquet R, Rizvi T A

A purine loop and the primer binding site are critical for the selective encapsidation of mouse mammary tumor virus genomic RNA by Pr77Gag Journal Article

In: Nucleic Acids Res, vol. 49, no. 8, pp. 4668-4688, 2021.

BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Stupfler B, Verriez C, Gallois-Montbrun S, Marquet R, Paillart J C

Degradation-independent inhibition of APOBEC3G by HIV-1 Vif protein Journal Article

In: Viruses, vol. 13, no. 4, pp. 617, 2021.

Abstract | Links | BibTeX | Tags: APOBEC3G, deamination, encapsidation, HIV, MARQUET, PAILLART, proteasome, RNP granules, Translation, ubiquitin, Unité ARN, vif

Welker L, Paillart J C, Bernacchi S

Importance of Viral Late Domains in Budding and Release of Enveloped RNA Viruses Journal Article

In: Viruses, vol. 13, no. 8, pp. 1559, 2021, ISBN: 34452424, (1999-4915 (Electronic) 1999-4915 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: PAILLART, Unité ARN

Gilmer O, Quignon E, Jousset A C, Paillart J C, Marquet R, Vivet-Boudou V

Chemical and Enzymatic Probing of Viral RNAs: From Infancy to Maturity and Beyond Journal Article

In: Viruses, vol. 13, no. 10, pp. 1894, 2021.

Abstract | Links | BibTeX | Tags: Capillary electrophoresis, chemical probe, enzymatic probe, high-throughput sequencing, MARQUET, mutational profiling, PAILLART, RNA, SHAPE, structure, Unité ARN

Lyonnais S., Sadiq S. K., Lorca-Oro C., Dufau L., Nieto-Marquez S., Escriba T., Gabrielli N., Tan X., Ouizougun-Oubari M., Okoronkwo J., Reboud-Ravaux M., Gatell J. M., Marquet R., Paillart J. C., Meyerhans A., Tisne C., Gorelick R. J., Mirambeau G.

The HIV-1 Nucleocapsid Regulates Its Own Condensation by Phase-Separated Activity-Enhancing Sequestration of the Viral Protease during Maturation Journal Article

In: Viruses, vol. 13, no. 11, 2021, ISBN: 34835118, (1999-4915 (Electronic) 1999-4915 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

2020

Bernacchi S

Special Issue "Function and Structure of Viral Ribonucleoproteins Complexes" Journal Article

In: Viruses, vol. 12, no. 12, pp. E1355, 2020.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Ali L M, Pitchai F N, Vivet-Boudou V, Chameettachal A, Jabeen A, Pillai V N, Mustafa F, Marquet R, Rizvi T A

Role of Purine-Rich Regions in Mason-Pfizer Monkey Virus (MPMV) Genomic RNA Packaging and Propagation Journal Article

In: Frontiers in Microbiology, no. 11, pp. 595410, 2020.

Abstract | Links | BibTeX | Tags: base paired purines, MARQUET, Mason-Pfizer monkey virus, PAILLART, retroviruses, RNA packaging, RNA secondary structure, RNA-Gag interaction, SHAPE, single-stranded purines, Unité ARN

Quang N Nguyen, Goudey S, Ségéral E, Mohammad A, Lemoine S, Blugeon C, Versapuech M, Paillart J C, Berlioz-Torrent C, Emiliani S, Gallois-Montbrun S

Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection Journal Article

In: Retrovirology, vol. 17, no. 1, pp. 25, 2020, ISBN: 32807178.

Abstract | Links | BibTeX | Tags: HIV RNA Alternative splicing Viral transcriptome ONT long-read sequencing, MARQUET, PAILLART, Unité ARN

Boutant E, Bonzi J, Anton H, Nasim M Bin, Cathagne R, Real E, Dujardin D, Carl P, Didier P, Paillart J C, Marquet R, Mely Y, de Rocquigny H, Bernacchi S

Zinc Fingers in HIV-1 Gag Precursor Are Not Equivalent for gRNA Recruitment at the Plasma Membrane Journal Article

In: Biophys J, vol. 119, no. 2, pp. 419-433, 2020, ISBN: 32574557.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

R Marquet C Verriez J-C Paillart, Stupfler B

Les APOBEC : histoire d’une famille de protéines antivirales et mutagènes. Journal Article

In: Virologie, vol. 24, no. 6, pp. 381-418, 2020.

Abstract | BibTeX | Tags: APOBEC3, cancer, Facteurs de restriction, MARQUET, PAILLART, Unité ARN, vif, VIH-1

Bernacchi S, Ennifar E

Analysis of the HIV-1 Genomic RNA Dimerization Initiation Site Binding to Aminoglycoside Antibiotics Using Isothermal Titration Calorimetry Book Chapter

In: Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, vol. 2113, pp. 237-250, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006318.

Abstract | Links | BibTeX | Tags: Aminoglycosides, dimerization, drug interaction, ENNIFAR, HIV-1, initiation site, ITC, MARQUET, PAILLART, RNA, Thermodynamics RNA, Unité ARN, Viral

Bernacchi S

Dynamic Light Scattering Analysis on RNA Associated to Proteins Book Chapter

In: Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, vol. 2113, pp. 31-39, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006306.

Abstract | Links | BibTeX | Tags: Dynamic light scattering, Hydrodynamic radius Diffusion coefficient, MARQUET, PAILLART, Pr55Gag, precursor, Protein-RNA interactions, Unité ARN, Viral assembly, Viral genomic RNA Viral spliced RNA

2019

Mailler E, Paillart J C, Marquet R, Smyth R P, Vivet-Boudou V

The evolution of RNA structural probing methods: From gels to next-generation sequencing Journal Article

In: Wiley Interdiscip Rev RNA, vol. 10, no. 2, pp. e1518, 2019, ISBN: 30485688.

Abstract | Links | BibTeX | Tags: MARQUET, NGS RNA probing structure, PAILLART, Unité ARN

Krishnan A, Pillai V, Chameettachal A, Ali L M, Pitchai F Nuzra Nagoor, Tariq S, Mustafa F, Marquet R, Rizvi T A

Purification and Functional Characterization of a Biologically Active Full-Length Feline Immunodeficiency Virus (FIV) Pr50Gag. Journal Article

In: Viruses, vol. 11, no. 8, pp. 689, 2019, ISBN: 31357656.

Abstract | Links | BibTeX | Tags: Gag protein purification His-tag fusion protein Pr50Gag protein expression feline immunodeficiency virus (FIV) retroviral RNA packaging viral assembly, MARQUET, PAILLART, Unité ARN

Kalloush R M, Vivet-Boudou V, Ali L M, Pillai V, Mustafa F, Marquet R, Rizvi T A

Stabilizing role of structural elements within the 5´ Untranslated Region (UTR) and gag sequences in Mason-Pfizer monkey virus (MPMV) genomic RNA packaging Journal Article

In: RNA Biol, vol. 16, no. 5, pp. 612-625, 2019, ISBN: 30773097.

Abstract | Links | BibTeX | Tags: MARQUET, MARQUET PAILLART Mason-Pfizer monkey virus (MPMV) RNA packaging RNA secondary structure Retroviruses U5/Gag LRIs gag, Mason-Pfizer monkey virus (MPMV) RNA packaging RNA secondary structure Retroviruses U5/Gag LRIs gag, PAILLART, Unité ARN

2018

Smyth R P, Smith M R, Jousset A C, Despons L, Laumond G, Decoville T, Cattenoz P, Moog C, Jossinet F, Mougel M, Paillart J C, von Kleist M, Marquet R

In cell mutational interference mapping experiment (in cell MIME) identifies the 5′ polyadenylation signal as a dual regulator of HIV-1 genomic RNA production and packaging Journal Article

In: Nucleic Acids Res, vol. 46, no. 9, pp. e57, 2018, ISBN: 29514260.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Ferhadian D, Contrant M, Printz-Schweigert A, Smyth R P, Paillart J C, Marquet R

Structural and functional motifs in influenza virus RNAs Journal Article

In: Front Microbiol, vol. 9, pp. 599, 2018, ISBN: 29651275.

Abstract | Links | BibTeX | Tags: CRNA RNA RNA structure influenza influenza A virus promoter vRN, MARQUET, PAILLART, Unité ARN

Dubois N, Marquet R, Paillart J C, Bernacchi S

Retroviral RNA dimerization: from structure to functions Journal Article

In: Front Microbiol, vol. 9, pp. 527, 2018, ISBN: 29623074.

Abstract | Links | BibTeX | Tags: HIV MuLV RNA dimerization function retrovirus structure, MARQUET, PAILLART, Unité ARN

Dubois N, Khoo K K, Ghossein S, Seissler T, Wolff P, McKinstry W J, Mak J, Paillart J C, Marquet R, Bernacchi S

The C-terminal p6 domain of the HIV-1 Pr55Gag precursor is required for specific binding to the genomic RNA. Journal Article

In: RNA Biol, vol. 15, no. 7, pp. 923-936, 2018, ISBN: 29954247.

Abstract | Links | BibTeX | Tags: ENNIFAR, HIV-1 Pr55Gag RNA-protein binding specificity fluorescence spectroscopy genomic RNA p6 domain, MARQUET, PAILLART, Unité ARN

Chameettachal A, Pillai V N, Ali L M, Pitchai F N N, Ardah M T, Mustafa F, Marquet R, Rizvi T A

Biochemical and Functional Characterization of Mouse Mammary Tumor Virus Full-Length Pr77Gag Expressed in Prokaryotic and Eukaryotic Cells Journal Article

In: Viruses, vol. 10, no. 6, pp. 334, 2018, ISBN: 29912170.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Pr77Gag RNA packaging RNA–Gag interactions RNA–protein interaction mouse mammary tumor virus (MMTV) protein assembly protein expression protein purification retrovirus, Unité ARN

Pitchai F N N, Ali L, Pillai V N, Chameettachal A, Ashraf S S, Mustafa F, Marquet R, Rizvi T A

Expression, purification, and characterization of biologically active full-length Mason-Pfizer monkey virus (MPMV) Pr78Gag Journal Article

In: Sci Rep, vol. 8, no. 1, pp. 11793, 2018, ISBN: 30087395.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Mustafa F, Vivet-Boudou V, Jabeen A, Ali L M, Kalloush R M, Marquet R, Rizvi T A

The bifurcated stem loop 4 (SL4) is crucial for efficient packaging of mouse mammary tumor virus (MMTV) genomic RNA Journal Article

In: RNA Biol, vol. 15, no. 8, pp. 1047-1059, 2018, ISBN: 29929424.

Abstract | Links | BibTeX | Tags: MARQUET, Mouse mammary tumor virus RNA packaging and dimerization RNA secondary structure Retroviruses palindrome, PAILLART, Unité ARN

Meshri S E El, Boutant E, Mouhand A, Thomas A, Larue V, Richert L, Vivet-Boudou V, Mély Y, Tisné C, Muriaux D, de Rocquigny H

The NC domain of HIV-1 Gag contributes to the interaction of Gag with TSG101 Journal Article

In: Biochim Biophys Acta-Gen Subj, vol. 1862, no. 6, pp. 1421-1431, 2018, ISBN: 29571744.

Abstract | Links | BibTeX | Tags: FRET Gag HIV NMR Nucleocapsid TSG101, MARQUET, PAILLART, Unité ARN

2017

Seissler T, Marquet R, Paillart J C

Hijacking of the Ubiquitin/Proteasome Pathway by the HIV Auxiliary Proteins Journal Article

In: Viruses, vol. 9, no. 11, pp. 322, 2017, ISBN: 29088112.

Abstract | Links | BibTeX | Tags: APOBEC BST2/Tetherin HIV March8 SAMHD1 TRIM5α proteasome restriction factors ubiquitin, MARQUET, PAILLART, Unité ARN

Edelmann F T, Schlundt A, Heym R G, Jenner A, Niedner-Boblenz A, Syed M I, Paillart J C, Stehle R, Janowski R, Sattler M, Jansen R P, Niessing D

Molecular architecture and dynamics of ASH1-mRNA recognition by its mRNA-transport complex Journal Article

In: Nat Struct Mol Biol, vol. 24, no. 2, pp. 152-161, 2017, ISBN: 28092367.

Abstract | Links | BibTeX | Tags: Cell polarity RNA transport X-ray crystallography, MARQUET, MARQUET PAILLART Cell polarity RNA transport X-ray crystallography, PAILLART, Unité ARN

Eckenfelder A, Ségéral E, Pinzon N, Ulveling D, Amadori C, Charpentier M, Nidelet S, Concordet J P, Zagury J F, Paillart J C, Berlioz-Torrent C, Seitz H, Emiliani S, Gallois-Montbrun S

Argonaute proteins regulate HIV-1 multiply spliced RNA and viral production in a Dicer independent manner. Journal Article

In: Nucleic Acids Res, vol. 45, no. 7, pp. 4158-4173, 2017, ISBN: 28003477.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Bernacchi S, El-Wahab E W Abd, Dubois N, Hijnen M, Smyth R P, Mak J, Marquet R, Paillart J C

HIV-1 Pr55Gag binds genomic and spliced RNAs with different affinity and stoechiometry. Journal Article

In: RNA Biol, vol. 14, no. 90, pp. 103, 2017, ISBN: 27841704.

Abstract | Links | BibTeX | Tags: HIV-1 Pr55Gag fluorescence spectroscopy genomic RNA selection high affinity binding site protein-RNA interaction stoichiometry, MARQUET, PAILLART, Unité ARN

2016

Racine P J, Chamontin C, de Rocquigny H, Bernacchi S, Paillart J C, Mougel M

Requirements for nucleocapsid-mediated regulation of reverse transcription during the late steps of HIV-1 assembly. Journal Article

In: Sci Rep, vol. 6, pp. 27536, 2016, ISBN: 27273064.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Mekdad H E, Boutant E, Karnib H, Biedma M E, Sharma K K, Malytska I, Laumond G, Roy M, Réal E, Paillart J C, Moog C, Darlix J L, Mély Y, de Rocquigny H

Characterization of the interaction between the HIV-1 Gag structural polyprotein and the cellular ribosomal protein L7 and its implication in viral nucleic acid remodeling. Journal Article

In: Retrovirology, vol. 13, no. 1, pp. 54, 2016, ISBN: 27515235.

Abstract | Links | BibTeX | Tags: HIV Gag RPL7 Interaction Chaperone activity Nucleocapsid, MARQUET, PAILLART, Unité ARN

Mailler E, Bernacchi S, Marquet R, Paillart J C, Vivet-Boudou V, Smyth R P

The life-cycle of the HIV-1 Gag-RNA complex. Journal Article

In: Viruses, vol. 8, no. 9, pp. 248, 2016, ISBN: 27626439.

Abstract | Links | BibTeX | Tags: HIV-1 packaging Gag genomic RNA assembly, MARQUET, PAILLART, Unité ARN

Guerrero S X, Libre C, Batisse J, Mercenne G, Richer D, Laumond G, Decoville T, Moog C, Marquet R, Paillart J C

Translational regulation of APOBEC3G mRNA by Vif requires its 5′UTR and contributes to restoring HIV-1 infectivity Journal Article

In: Sci Rep, vol. 6, pp. 39507, 2016.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, Unité ARN

Cromer D, Schlub T E, Smyth R P, Grimm A J, Chopra A, Mallal S, Davenport M P, Mak J

HIV-1 mutation and recombination rates are different in macrophages and T-cells Journal Article

In: Viruses, vol. 8, no. 4, pp. 118, 2016.

Abstract | Links | BibTeX | Tags: HIV mutation recombination evolution, MARQUET, PAILLART, Unité ARN

Smyth R P, Negroni M

A step forward understanding HIV-1 diversity Journal Article

In: Retrovirology, vol. 13, no. 1, pp. 27, 2016, ISBN: 27093884.

Abstract | Links | BibTeX | Tags: alternative splicing aminoacyl-tRNA synthetase enzyme kinetics mitochondria mitochondrial disease threonyl-tRNA synthetase, MARQUET, NEGRONI, PAILLART, Unité ARN

Isel C, Munier S, Naffakh N

Experimental Approaches to Study Genome Packaging of Influenza A Viruses. Journal Article

In: Viruses, vol. 8, no. 8, pp. 218, 2016, ISBN: 27517951.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, RNA-RNA interaction competitive reverse genetics influenza virus packaging assay packaging signal single-molecule FISH, Unité ARN

Gilbertson B, Zheng T, Gerber M, Printz-Schweigert A, Ong C, Marquet R, Isel C, Rockman S, Bown L

Influenza NA and PB1 Gene Segments Interact during the Formation of Viral Progeny: Localization of the Binding Region within the PB1 Gene. Journal Article

In: Viruses, vol. 8, no. 8, pp. 238, 2016, ISBN: 27556479.

Abstract | Links | BibTeX | Tags: MARQUET, PAILLART, RNA-RNA interaction competitive transfection gene segments influenza virus packaging reassortment viral polymerase, Unité ARN