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126 entries « 1 of 3 »

2022

McKellar Stuart W, Ivanova Ivayla, Arede Pedro, Zapf Rachel L, Mercier Noémie, Chu Liang-Cui, Mediati Daniel G, Pickering Amy C, Briaud Paul, Foster Robert G, Kudla Grzegorz, Fitzgerald J Ross, Caldelari Isabelle, Carroll Ronan K, Tree Jai J, Granneman Sander

RNase III CLASH in MRSA uncovers sRNA regulatory networks coupling metabolism to toxin expression Journal Article

In: Nat Commun, vol. 13, no. 1, pp. 3560, 2022, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Desgranges E., Barrientos L., Herrgott L., Marzi S., Toledo-Arana A., Moreau K., Vandenesch F., Romby P., Caldelari I.

The 3'UTR-derived sRNA RsaG coordinates redox homeostasis and metabolism adaptation in response to glucose-6-phosphate uptake in Staphylococcus aureus Journal Article

In: Mol Microbiol, 2022, ISBN: 34783400, (1365-2958 (Electronic) 0950-382X (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Laveilhe A., Fochesato S., Lalaouna D., Heulin T., Achouak W.

Phytobeneficial traits of rhizobacteria under the control of multiple molecular dialogues Journal Article

In: Microb Biotechnol, 2022, ISBN: 35502577, (1751-7915 (Electronic) 1751-7915 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Charbonnier Mathilde, González-Espinoza Gabriela, Kehl-Fie Thomas E, Lalaouna David

Battle for Metals: Regulatory RNAs at the Front Line Journal Article

In: Front Cell Infect Microbiol, vol. 12, pp. 952948, 2022, ISSN: 2235-2988.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

2021

Lalaouna D, Fochesato S, Harir M, Ortet P, Schmitt-Kopplin P, Heulin T, Achouak W

Amplifying and Fine-Tuning Rsm sRNAs Expression and Stability to Optimize the Survival of Pseudomonas brassicacerum in Nutrient-Poor Environments Journal Article

In: Microorganisms, vol. 9, no. 2, pp. 250, 2021.

Abstract | Links | BibTeX | Tags: GacA-dependent, nutritional stress, Pseudomonas brassicacearum, ROMBY, Rsm sRNAs, sRNAs stability, Unité ARN

Mercier N, Prévost K, Massé E, Romby P, Caldelari I, Lalaouna D

MS2-Affinity Purification Coupled with RNA Sequencing in Gram-Positive Bacteria Journal Article

In: J Vis Exp, pp. e61731, 2021.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Catalan-Moreno A, Cela M, Menendez-Gil P, Irurzun N, Caballero C J, Caldelari I, Toledo-Arana A

RNA thermoswitches modulate Staphylococcus aureus adaptation to ambient temperatures Journal Article

In: Nucleic Acids Res, pp. on press, 2021, ISBN: 33660769, (1362-4962 (Electronic) 0305-1048 (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Ortet P, Fochesato S, Bitbol A F, Whitworth D E, Lalaouna D, Santaella C, Heulin T, Achouak W, Barakat M

Evolutionary history expands the range of signaling interactions in hybrid multikinase networks Journal Article

In: Sci Rep, vol. 11, no. 1, pp. 11763, 2021, ISBN: 34083699.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Giuliodori A M, Marzi S

Editorial: Interview With the Translational Apparatus: Stories of Intriguing Circuits and Mechanisms to Regulate Translation in Bacteria Journal Article

In: Front Microbiol, vol. 12, pp. 707354, 2021, ISBN: 34220790, (1664-302X (Print) 1664-302X (Linking) Editorial).

Links | BibTeX | Tags: ROMBY, Unité ARN

Barrientos L, Mercier N, Lalaouna D, Caldelari I

Assembling the Current Pieces: The Puzzle of RNA-Mediated Regulation in Staphylococcus aureus Journal Article

In: Front Microbiol, vol. 12, pp. 706690, 2021, ISBN: 34367109, (1664-302X (Print) 1664-302X (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Mediati D G, Lalaouna D, Tree J J

Burning the Candle at Both Ends: Have Exoribonucleases Driven Divergence of Regulatory RNA Mechanisms in Bacteria? Journal Article

In: mBio, pp. e0104121, 2021, ISBN: 34372700, (2150-7511 (Electronic) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Antoine L, Bahena-Ceron R, Bunwaree H Devi, Gobry M, Loegler V, Romby P, Marzi S

RNA Modifications in Pathogenic Bacteria: Impact on Host Adaptation and Virulence Journal Article

In: Genes (Basel), vol. 12, no. 8, 2021, ISBN: 34440299, (2073-4425 (Electronic) 2073-4425 (Linking) Journal Article Review).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Lalaouna D., Prévost K., Park S., Chénard T., Bouchard M - P., Caron M - P., Vanderpool C. K., Fei J., Massé E.

Binding of the RNA Chaperone Hfq on Target mRNAs Promotes the Small RNA RyhB-Induced Degradation in Escherichia coli Journal Article

In: Non-Coding RNA, vol. 7, no. 4, pp. 64, 2021.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Belinite M., Khusainov I., Soufari H., Marzi S., Romby P., Yusupov M., Hashem Y.

Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus Journal Article

In: Front Mol Biosci, vol. 8, pp. 738752, 2021, ISBN: 34869582, (2296-889X (Print) 2296-889X (Linking) Journal Article).

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

2020

Lalaouna D, Romby P

Manganese: the battle of the two armies Journal Article

In: Project Repository Journal, 2020.

Links | BibTeX | Tags: ROMBY, Unité ARN

Menendez-Gil P, Caballero C J, Catalan-Moreno A, Irurzun N, Barrio-Hernandez I, Caldelari I, Toledo-Arana A

Differential evolution in 3'UTRs leads to specific gene expression in Staphylococcus Journal Article

In: Nucleic Acids Res, vol. 48, no. 5, pp. 2544-2563, 2020, ISBN: 32016395.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Georg J, Lalaouna D, Hou S, Lott S C, Caldelari I, Marzi S, Hess W R, Romby P

The power of cooperation: Experimental and computational approaches in the functional characterization of bacterial sRNAs Journal Article

In: Mol Microbiol, vol. 113, no. 3, pp. 603-612, 2020, ISBN: 31705780.

Abstract | Links | BibTeX | Tags: ROMBY, Staphylococcus aureus CopraRNA MAPS post-transcriptional regulation sRNAs, Unité ARN

Antoine L, Wolff P

Mapping of Posttranscriptional tRNA Modifications by Two-Dimensional Gel Electrophoresis Mass Spectrometry Book Chapter

In: Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, vol. 2113, pp. 101-110, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006310.

Abstract | Links | BibTeX | Tags: 2D Gel isolation Nano-LC-MS/MS Posttranscriptional tRNA modifications, ARN-MS, ENNIFAR, ROMBY, Unité ARN

Desgranges E, Caldelari I, Marzi S, Lalaouna D

Navigation through the twists and turns of RNA sequencing technologies: Application to bacterial regulatory RNAs Journal Article

In: Biochim Biophys Acta Gene Regul Mech, vol. 1863, no. 3, pp. 194506, 2020, ISBN: 32068131.

Abstract | Links | BibTeX | Tags: Bacteria Post-transcriptional regulation RNA sequencing Regulatory network Small regulatory RNA Targetome, ROMBY, Unité ARN

Bouhedda F, Fam K T, Collot M, Autour A, Marzi S, Klymchenko A, Ryckelynck M

A dimerization-based fluorogenic dye-aptamer module for RNA imaging in live cells Journal Article

In: Nat Chem Biol, vol. 16, no. 1, pp. 69-76, 2020, ISBN: 31636432.

Abstract | Links | BibTeX | Tags: ROMBY, RYCKELYNCK, Unité ARN

Rol-Moreno J, Kuhn L, Marzi S, Simonetti A

Grad-cryo-EM: Tool to Isolate Translation Initiation Complexes From Rabbit Reticulocyte Lysate Suitable for Structural Studies Book Chapter

In: Arluison, V; Wien, F (Ed.): RNA Spectroscopy: Methods and Protocols, vol. 2113, pp. 329-339, Springer Protocols, Humana Press, New York, NY, 2020, ISBN: 32006323.

Abstract | Links | BibTeX | Tags: ENNIFAR, PPSE, ROMBY, Unité ARN

2019

P Brown RELISH Consortium, Zhou Y

Large expert-curated database for benchmarking document similarity detection in biomedical literature search Journal Article

In: Database, vol. 2019, no. 2019, pp. baz085, 2019.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Lalaouna D, Baude J, Wu Z, Tomasini A, Chicher J, Marzi S, Vandenesch F, Romby P, Caldelari I, Moreau K

RsaC sRNA modulates the oxidative stress response of Staphylococcus aureus during manganese starvation Journal Article

In: Nucleic Acids Res, vol. 47, no. 18, pp. 9871-9887, 2019, ISBN: 31504767.

Abstract | Links | BibTeX | Tags: PPSE, ROMBY, Unité ARN

Desgranges E, Marzi S, Moreau K, Romby P, Caldelari I

Noncoding RNA Journal Article

In: Microbiol Spectr, vol. 7, no. 2, pp. 1-2, 2019, ISBN: 31004423.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Desgranges E, Bronesky D, Corvaglia A, François P, Caballero C, Prado L, Toledo-Arana A, Lasa I, Moreau K, Vandenesch F, Marzi S, Romby P, Caldelari I

[RsaI, a multifaceted regulatory RNA, modulates the metabolism of the opportunistic pathogen Staphylococcus aureus] Journal Article

In: Med Sci (Paris), vol. 35, no. 12, pp. 1221-1223, 2019, ISBN: 31903946.

Links | BibTeX | Tags: ROMBY, Unité ARN

Bronesky D, Desgranges E, Corvaglia A, François P, Caballero C J, Prado L, Toledo-Arana A, Lasa I, Moreau K, Vandenesch F, Marzi S, Romby P, Caldelari I

A multifaceted small RNA modulates gene expression upon glucose limitation in Staphylococcus aureus Journal Article

In: EMBO J, vol. 38, no. 6, pp. e99363, 2019, ISBN: 30760492.

Abstract | Links | BibTeX | Tags: ROMBY, sRNA carbon metabolism catabolite control protein A pathogenic bacteria regulatory RNAs translational regulation, Unité ARN

Antoine L, Wolff P, Westhof E, Romby P, Marzi S

Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS Journal Article

In: Biochimie, vol. 164, pp. 60-69, 2019, ISBN: 31295507.

Abstract | Links | BibTeX | Tags: 2D gel isolation Staphylococcus aureus nanoLC/MSMS post-transcriptional tRNA modifications, ARN-MS, ENNIFAR, ROMBY, Unité ARN, WESTHOF

2018

Lalaouna D, Desgranges E, Caldelari I, Marzi S

MS2-Affinity Purification Coupled With RNA Sequencing Approach in the Human Pathogen Staphylococcus aureus Journal Article

In: Methods Enzymol, vol. 612, pp. 393-411, 2018, ISBN: 30502950.

Abstract | Links | BibTeX | Tags: Galaxy workflow Interactome MS2-affinity purification coupled with RNA sequencing RNA:RNA interaction Small regulatory RNA Staphylococcus aureus Targetome, ROMBY, Unité ARN

2017

Tomasini A, Moreau K, Chicher J, Geissmann T, Vandenesch F, Romby P, Marzi S, Caldelari I

The RNA targetome of Staphylococcus aureus non-coding RNA RsaA: impact on cell surface properties and defense mechanisms. Journal Article

In: Nucleic Acids Res, vol. 45, no. 11, pp. 6746-6760, 2017, ISBN: 28379505.

Abstract | Links | BibTeX | Tags: PPSE, ROMBY, Unité ARN

Lioliou E, Fechter P, Caldelari I, Jester B C, Dubrac S, Helfer A C, Boisset S, Vandenesch F, Romby P, Geissmann T

Erratum Journal Article

In: RNA Biol, vol. 14, no. 12, pp. 1827, 2017, ISBN: 29243975.

Links | BibTeX | Tags: ROMBY, Unité ARN

Khusainov I, Vicens Q, Bochler A, Grosse F, Myasnikov A, Ménétret J F, Chicher J, Marzi S, Romby P, Yusupova G, Yusupov M, Hashem Y

Structure of the 70S ribosome from human pathogen Staphylococcus aureus. Journal Article

In: Nucleic Acids Res, vol. 45, no. 2, pp. 1026, 2017, ISBN: 28123039.

Abstract | Links | BibTeX | Tags: PPSE, ROMBY, Unité ARN

Durand S, Braun F, Helfer A C, Romby P, Condon C

sRNA-mediated activation of gene expression by inhibition of 5'-3' exonucleolytic mRNA degradation. Journal Article

In: Elife, vol. 6, pp. e23602, 2017, ISBN: 28436820.

Abstract | Links | BibTeX | Tags: b. subtilis chromosomes genes infectious disease microbiology, ROMBY, Unité ARN

Caldelari I, Chane-Woon-Ming B, Noirot C, Moreau K, Romby P, Gaspin C, Marzi S

Complete genome sequence and annotation of the Staphylococcus aureus strain HG001 Journal Article

In: Genome Announc, vol. 5, no. 32, pp. e00783-00717, 2017, ISBN: 28798184.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Duval M, Marenna A, Chevalier C, Marzi S

Site-Directed Chemical Probing to map transient RNA/protein interactions. Journal Article

In: Methods, vol. 117, pp. 48-58, 2017, ISBN: 28027957.

Abstract | Links | BibTeX | Tags: BABE RNA chaperone proteins RNA/protein interaction hydroxyl radicals ribosomal protein S1 rpsO mRNA site directed chemical probing transient ribonucleoprotein complexes, ROMBY, Unité ARN

2016

Morfoisse F, Tatin F, Hantelys F, Adoue A, Helfer A C, Cassant-Sourdy S, Pujol F, Gomez-Brouchet A, Ligat L, Lopez F, Pyronnet S, Courty J, Guillermet-Guibert J, Marzi S, Schneider R J, Prats A C, Garmy-Susini B H

Nucleolin promotes heat shock-associated translation of VEGF-D to promote tumor lymphangiogenesis. Journal Article

In: Cancer Res, vol. 76, no. 15, pp. 4394-4405, 2016, ISBN: 27280395.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Mollerup M Storm, Ross J A, Helfer A C, Meistrup K, Romby P, Kallipolitis B H

Two novel members of the LhrC family of small RNAs in Listeria monocytogenes with overlapping regulatory functions but distinctive expression profiles. Journal Article

In: RNA Biol, vol. 13, no. 9, pp. 895-915, 2016, ISBN: 27400116.

Abstract | Links | BibTeX | Tags: Listeria monocytogenes antisense multiplicity post-transcriptional regulation sRNAs, ROMBY, Unité ARN

Lioliou E, Fechter P, Caldelari I, Jester B C, Dubrac S, Helfer A C, Boisset S, Vandenesch F, Romby P, Geissmann T

Various checkpoints prevent the synthesis of Staphylococcus aureus peptidoglycan hydrolase LytM in the stationary growth phase. Journal Article

In: RNA Biol, vol. 13, no. 4, pp. 427-440, 2016, ISBN: 26901414.

Abstract | Links | BibTeX | Tags: LytM RNAIII Staphylococcus aureus autolysin cell wall peptidoglycan peptidoglycan hydrolase post-transcriptional regulation, ROMBY, Unité ARN

Khusainov I, Marenna A, Cerciat M, Fechter P, Hashem Y, Marzi S, Romby P, Yusupova G, Yusupov M

[A glimpse on Staphylococcus aureus translation machinery and its control]. Journal Article

In: Mol Biol (Mosk), vol. 50, no. 4, pp. 549-557. Russian, 2016, ISBN: 27668596.

Abstract | Links | BibTeX | Tags: ROMBY, Staphylococcus aureus post-transcriptional regulation quorum sensing regulatory RNAs, Unité ARN

Fechter P, Parmentier D, Wu Z, Fuchsbauer O, Romby P, Marzi S

Traditional Chemical Mapping of RNA Structure In Vitro and In Vivo. Book Chapter

In: Turner, D; Mathews, D (Ed.): RNA Structure Determination: Methods and Protocols, vol. 1490, pp. 83-103, Springer Protocols, Humana Press, 2016, ISBN: 27665595.

Abstract | Links | BibTeX | Tags: Chemical mapping Lead(II) induced cleavages RNA structure probing, ROMBY, Unité ARN

Bronesky D, Wu Z, Marzi S, Walter P, Geissmann T, Moreau K, Vandenesch F, Caldelari I, Romby P

Staphylococcus aureus RNAIII and Its Regulon Link Quorum Sensing, Stress Responses, Metabolic Adaptation, and Regulation of Virulence Gene Expression. Journal Article

In: Annu Rev Microbiol, vol. 70, pp. 299-316, 2016, ISBN: 27482744.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

2015

Wagner E G, Romby P

Small RNAs in Bacteria and Archaea: Who They Are, What They Do, and How They Do It. Journal Article

In: Adv Genet, vol. 90, pp. 133-208, 2015, ISBN: 26296935.

Abstract | Links | BibTeX | Tags: Antisense RNA Hfq Interconnected networks Posttranscriptional regulation RNA sponges Regulatory RNA, ROMBY, Unité ARN

Romby P, Dontsova O

A glimpse at long regulatory RNAs in various organisms. Journal Article

In: Biochimie, vol. 117, pp. 1-2, 2015, ISBN: 26365222.

Links | BibTeX | Tags: ROMBY, Unité ARN

Nitzan M, Fechter P, Peer A, Altuvia Y, Bronesky D, Vandenesch F, Romby P, Biham O, Margalit H

A defense-offense multi-layered regulatory switch in a pathogenic bacterium. Journal Article

In: Nucleic Acids Res, vol. 43, no. 3, pp. 1357-1369, 2015, ISBN: 25628364.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Durand S, Tomasini A, Braun F, Condon C, Romby P

sRNA and mRNA turnover in Gram-positive bacteria. Journal Article

In: FEMS Microbiol Rev, vol. 39, no. 3, pp. 316-330, 2015, ISBN: 25934118.

Abstract | Links | BibTeX | Tags: Gram-positive bacteria mRNA stability ribonucleases sRNA, ROMBY, Unité ARN

Durand S, Braun F, Lioliou E, Romilly C, Helfer A C, Kuhn L, Quittot N, Nicolas P, Romby P, Condon C

A Nitric Oxide Regulated Small RNA Controls Expression of Genes Involved in Redox Homeostasis in Bacillus subtilis. Journal Article

In: PLoS Genet, vol. 11, no. 2, pp. e1004957, 2015, ISBN: 25643072.

Abstract | Links | BibTeX | Tags: PPSE, ROMBY, Unité ARN

Duval M, Simonetti A, Caldelari I, Marzi S

Multiple ways to regulate translation initiation in bacteria: mechanisms, regulatory circuits, dynamics. Journal Article

In: Biochimie, vol. 114, pp. 18-29, 2015, ISBN: 25792421.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

2014

Morfoisse F, Kuchnio A, Frainay C, Gomez-Brouchet A, Delisle M B, Marzi S, Helfer A C, Hantelys F, Pujol F, Guillermet-Guibert J, Bousquet C, Dewerchin M, Pyronnet S, Prats A C, Carmeliet P, Garmy-Susini B

Hypoxia Induces VEGF-C Expression in Metastatic Tumor Cells via a HIF-1α-Independent Translation-Mediated Mechanism. Journal Article

In: Cell Rep, vol. 6, no. 1, pp. 155-167, 2014, ISBN: 24388748.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN

Tomasini A, François P, Howden B P, Fechter P, Romby P, Caldelari I

The importance of regulatory RNAs in Staphylococcus aureus. Journal Article

In: Infect Genet Evol, vol. 21, no. C, pp. 616-626, 2014, ISBN: 24291227.

Abstract | Links | BibTeX | Tags: Regulatory RNA Staphylococcus Virulence, ROMBY, Unité ARN

Sesto N, Touchon M, Andrade J M, Kondo J, Rocha E P, Arraiano C M, Archambaud C, Westhof E, Romby P, Cossart P

A PNPase Dependent CRISPR System in Listeria. Journal Article

In: PLoS Genet, vol. 10, no. 1, pp. e1004065, 2014, ISBN: 24415952.

Abstract | Links | BibTeX | Tags: ROMBY, Unité ARN, WESTHOF

Romilly C, Lays C, Tomasini A, Caldelari I, Benito Y, Hammann P, Geissmann T, Boisset S, Romby P, Vandenesch F

A Non-Coding RNA Promotes Bacterial Persistence and Decreases Virulence by Regulating a Regulator in Staphylococcus aureus. Journal Article

In: PLoS Pathog, vol. 10, no. 3, pp. e1003979, 2014, ISBN: 24651379.

Abstract | Links | BibTeX | Tags: PPSE, ROMBY, Unité ARN

126 entries « 1 of 3 »